TCONS_00020714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020714
Unique NameTCONS_00020714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020714 ID=TCONS_00020714|Name=TCONS_00020714|organism=Clytia hemisphaerica|type=transcript|length=384bp
CTTTCTTCGAGTCGAAGGTACTAAGATTGCGAGATATAGGGGACATCCGA
ATACAAAGCTCGAAATTCAACCCTTAGAGActgaattttgaatattttga
tgttattaCGACCCATATAGAGACtatttttccaacttttagtAGAAAAT
TTCTTCATACTTTCTGTCCAGGTGGGTACCGTAAAAGATTCCTATGAGAG
TCAATAAAGTTTCTTAAAAACaggcaaaaattcaaaactggtCTCGTAAA
ATTGGACAAAACCAGGGTTTAGGACCTTCCAGAAAATGACCTCGACCAAC
ATAGGATATTTCTTCATGGAAAACTTGATTGTCTTAATTGGCCATTCTAA
AGAGTGAGTTATCGAGTACTTAATTAATTAGCCC
Run BLAST on NCBI

transcript from alignment at sc0000363:20389..20772

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020714 ID=TCONS_00020714|Name=TCONS_00020714|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0000363:20389..20772 (Clytia hemisphaerica)
GGGCTAATTAATTAAGTACTCGATAACTCACTCTTTAGAATGGCCAATTA
AGACAATCAAGTTTTCCATGAAGAAATATCCTATGTTGGTCGAGGTCATT
TTCTGGAAGGTCCTAAACCCTGGTTTTGTCCAATTTTACGAGaccagttt
tgaatttttgcctGTTTTTAAGAAACTTTATTGACTCTCATAGGAATCTT
TTACGGTACCCACCTGGACAGAAAGTATGAAGAAATTTTCTactaaaagt
tggaaaaataGTCTCTATATGGGTCGtaataacatcaaaatattcaaaat
tcagTCTCTAAGGGTTGAATTTCGAGCTTTGTATTCGGATGTCCCCTATA
TCTCGCAATCTTAGTACCTTCGACTCGAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011616XLOC_011616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020714-exon-sc0000363-1491911889:20389..20772TCONS_00020714-exon-sc0000363-1491911889:20389..20772Clytia hemisphaericaexon
TCONS_00020714-exon-sc0000363-1510915933:20389..20772TCONS_00020714-exon-sc0000363-1510915933:20389..20772Clytia hemisphaericaexon
TCONS_00020714-exon-sc0000363-1575043694:20389..20772TCONS_00020714-exon-sc0000363-1575043694:20389..20772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:20389..20772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.432077	0.260641	0.732028	0.51251	0	0	0	0.269659	0	0.115117	0	0	0	0.431013	0.225512	0.784043	0	0	0	0	0.582775	0.277983	0.296671	0.900058	0.917016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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