TCONS_00020710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020710
Unique NameTCONS_00020710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020710 ID=TCONS_00020710|Name=TCONS_00020710|organism=Clytia hemisphaerica|type=transcript|length=549bp
ttcagattccATATCCTAGTAAATTCTAGTAAAAGGAATATTATTGAATA
ATAaagttatatatattttacaaaataatttgCTACAAGAATGTATTCAT
GTTAAACAAGATTACAGTGTAATTGAAGCGGAATTTCTGTCAGGTGGCAA
AGTTATACTTGATCAATGGGGCATAGTCACAGCACATTTCATCAAACCAG
CAATGAAGCTCTGAATCTAAACAGACCTATGTCAACAACCTCGGGAAAAA
GTAAAGATTTGCCACCAAACCTGGATAGATTTAATGATTTGACACAACTA
CCTCCTGAAGTTGCTGtacaaattctttcaaatttgaATGCCACTGATTT
GTGTTTGGCTTCTTGTGTTTGGAAGGATTTGGCAGAAAATGAATTGCTTT
GGAAAAAGCTTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCAAT
TTGAAGTATTCTCATATTTCAATCAAGCTTAagaaaccaaTTTTCAAGAA
CCTATACTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCT
Run BLAST on NCBI

transcript from alignment at sc0000363:282194..284918-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020710 ID=TCONS_00020710|Name=TCONS_00020710|organism=Clytia hemisphaerica|type=transcript|length=2725bp|location=Sequence derived from alignment at sc0000363:282194..284918- (Clytia hemisphaerica)
TTCAGATTCCATATCCTAGTAAATTCTAGTAAAAGGAATATTATTGAATA
ATAAAGTTATATATATTTTACAAAATAATTTGCTACAAGAATGTATTCAT
GTTAAACAAGATTACAGTGTAATTGAAGCGGAATTTCTGTCAGGTGGCAA
AGTTATACTTGATCAATGGGGCATAGTCACAGCACATTTCATCAAACCAG
CAATGAAGCTCTGAATCTAAACAGACCTATGTCAACAACCTCGGGAAAAA
GTAAAGATTTGCCACCAAACCTGGATAGATTTAATGATTTGACACAACTA
CCTCCTGAAGTTGCTGTACAAATTCTTTCAAATTTGAATGCCACTGATTT
GTGTTTGGCTTCTTGTGTTTGGAAGGATTTGGCAGAAAATGAATTGCTTT
GGAAAAAGTAAGTTTTAATATTAGAATCTTTTTATTTTTTATTTTTTAAA
TGAAAAGATTGAAAATGGTTTCTTTGAAAATTTGTTTAGAAAATGTTTTA
CGCAACTGATATTTATGGAAAAACTTTGTCTTGATCATTGTGCATCATTT
GAAAGAGAAAAAGGGATTTGAAAATCTTGAGAGAATTCCAATTGAGACAC
AAAATATAATTTATTACCCTTTTTTCAGGCTTTGCTTTTCCAAATGGGGA
TATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAATCAAGCT
TAAGGTTTGATTAATTTTTTTGTATATATTTTAAATTTTCAATCAATACA
GGCCAATTTCCAAGGTCTTAAGGTTCCACCGTTTTTATCAAAAGATTCTA
GAATATGTAGGTTCGAAAAATGTAGGGAGGTCTGGGAGCACTGTTAACCC
TGATCTGGTCCAAGGCAGAGTCATAGTGGAAGTGTAGGGAGTGGTAGAAT
TAAGTGCTAAATTATTGAATACTTGATTGAAGAGTTTCTTTACCTCTTTA
CCTTTTTCCACAGCCAATTTTTTTTCTTGAAGATTCAACCTGATTCAATA
TAACAACTCAATTCAAGATTGAGTGACCCGGTAGCAGAAAATCCCTGGAA
GTTTGCCTGCAATTAACGGATCTTGGCTTCATTAAAACTAAGCCTTTTGG
TTCACACACTCTTTAAATAAAATTTGACAATTTATTATTTTCTTTGAATC
ATATTTTTTTCTTTTTTTTTAGAAACCAATTTTCAAGAACCTATACTTAT
CATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTTATCAGGTACTA
AATTACATCCTGAAATTTTAATGAATTTTTAGTTTTTCTTCTTACAAATG
ATGAAGCAAGTTTTTCTGTCTTTATCCCATAGACTAAATACCGTCCTTAT
TAGATTTGCATCCTAGTAACAGATAACAAGCCTTGAGAGAAGAAGTTTCA
TAAAATTGGACTCTCTTTTTTGACATTTCGTCCAGTCGTACCAAAGCAAA
TTTCCGTACTGGATATAACAGAGTGCTTCTTTAAATTGAAGCTTCATATT
ATTCTGTTTTCCAGGGTATAAAATATCTGACAGACCATAACATTATTGAA
GAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTTCACTATC
CAATAAATCTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCCTTATTCT
TTCAGAGATTCATAATGAACACCGAAGGAAAATTATTCAGAACACTGTAT
TTTGCTTGAATTATCTTTTCTACTTGCTTTACTCTGGACATTCCTCTTGG
TATTTTTGAAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGAAAAATGA
ATTCNTTGAAAATGGTTTCTTTGAAAATAGACGATATCGGCTTTGCCAAA
TTCTCCCCGAATGATTACCTATGATGCATTGCGCAAAAAAATTCACGGAC
GATAACCCTAACCCTAACAATGCATCATGGGTAATCATTCGGGGAGAATT
CGGAAAGCCGATATCGTCTATTTGTTTAGAAAATGTTTTACGCAACTGAT
ATTTATGGAAAAACTTTGTCTTGATCATTGTGCAATTTGAAAGAGAAAAA
GGTAAAAATGGATTTGAAAATCTTGAAAGAATTCCAATTGAGACAATTTA
TTACCATTTTTTCAGGCTTTGCTTTTCCAAATGGGGATATACAAGCATTT
ATGGCAATTTGAAGTATTCTCATATTTCAATCAAGCTTAAGGTTTGATTA
ATTTTTTTGTATATATTTTAAATTTTCAATCAATACAGGCCAATTTCCAA
GGTCTTAAGGTTCCACCGTTTTTATCAAAAGATTCTAGAATATGTAGGTT
CGAAAAATGTAGGGAGGTCTGGGAGCACTGTTAACCCTGATCTGGTCCAA
GGCAGAGTCATAGTGGAAGTGTAGGGAGTGGTAGAATTAAGTGCTAAATT
ATTGAATACTTGATTGAAGAGTTTCTTTACCTCTTTACCTTTTTCCACAG
CCAATTTTTTTTCTTGAAGATTCAACCTGATTCAATATAACAACTCAATT
CAAGATTGAGTGACCCGGTAGCAGAAAATCCCTGGAAGTTTGCCTGCAAT
TAACGGATCTTGGCTTCATTAAAACTAAGCCTTTTGGTTCACACACTCTT
TAAATAAAATTTGACAATTTATTATTTTCTTTGAATCATATTTTTTTCTT
TTTTTTTAGAAACCAATTTTCAAGAACCTATACTTATCATTAGATGAAGC
TACTCTTATATTTGGATTCCGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011613XLOC_011613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020710-exon-sc0000363-1575043694:284512..284918TCONS_00020710-exon-sc0000363-1575043694:284512..284918Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1575043694:284215..284290TCONS_00020710-exon-sc0000363-1575043694:284215..284290Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1575043694:282194..282259TCONS_00020710-exon-sc0000363-1575043694:282194..282259Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1510915933:284512..284918TCONS_00020710-exon-sc0000363-1510915933:284512..284918Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1510915933:284215..284290TCONS_00020710-exon-sc0000363-1510915933:284215..284290Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1510915933:282194..282259TCONS_00020710-exon-sc0000363-1510915933:282194..282259Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1491911889:284512..284918TCONS_00020710-exon-sc0000363-1491911889:284512..284918Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1491911889:284215..284290TCONS_00020710-exon-sc0000363-1491911889:284215..284290Clytia hemisphaericaexon
TCONS_00020710-exon-sc0000363-1491911889:282194..282259TCONS_00020710-exon-sc0000363-1491911889:282194..282259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:282194..284918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.83527	9.85702	1.05172	2.14128	7.22428	2.65875	8.61736e-05	5.13719e-08	11.9014	9.79646	0	9.92338	8.76459	6.51248	9.95217	9.47218	0.0668803	10.6026	7.302	11.5966	10.6044	14.7766	15.5797	18.8242	10.6735	5.05484	9.91105	7.35366	9.95557	8.44719
Blast
[Close]
BLAST of TCONS_00020710 vs. Swiss-Prot (Human)
Match: FBX8 (F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.455e-22
Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:  280 FNDLTQLPPEVAVQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGN---LKYSHISIKLKKPIFKNLYLSLDEATLIFGFRP 549
            F +L  LPPE++  ILS LNATDLCLASCVW+DLA +ELLW+ LC S WG+ SIY     L +S          F+ LY+ LDE +L F   P
Sbjct:   68 FINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFS----------FRKLYMQLDEGSLTFNANP 150
The following BLAST results are available for this feature:
BLAST of TCONS_00020710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX86.455e-2251.61F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2... [more]
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