TCONS_00020706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020706
Unique NameTCONS_00020706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020706 ID=TCONS_00020706|Name=TCONS_00020706|organism=Clytia hemisphaerica|type=transcript|length=1581bp
TTCCAGGGTATAAAATATCTGACAGACCATAACATTATTGAAGAAGAAAC
GGAAGAAGTTGCTAAATTCATACATCACACATCTTCACTATCCAATAAAT
CTCTCACCAAGTATCTCAAAGACAAGAGAGAAGTGTTGGATCTTTTAGTC
ATGTATATGAATTTTACTGGTTTTACCATATGTGACGGGCTTAggaaatt
tttcaagaaaattcacCCACCAGAGGAACGAGGCAATTTCTTAGATGTCT
TGATAGAGAAATTTTCACATCGATTCATTGAATGCAATCCCACGTCAGAT
CTCAACCAAGAGCATATATCTGTGTTGTGTTATTCATTGATGTTATTAAG
TGTCGACTTGTACAGCCCACATGTTCGAAACAAAATGTCGAAACGTGAAT
ATATTAAGAACAATCATCAAGTTTTAAATGGTGAAGTTAGTCGAGAGACA
CTTGGTGATTTTTACGACGATGTTTATTTAAATGGACACATAGTGCCTTC
TCATTGTAAACAAGTCAATAAACGGAAAGGTGGCAAACGACAGCATTGCT
TTCCATTTTATAGACCCTATGGTGCCATCTTTGAGATAAAACCGATAGAA
CTGAAGCTGTTGAGTTGTAACTGCTGATAGTTTCGGGTTTTAGATTGTAT
AGATATTTTTTGATACAGGGATGAAATATGTGGTCGGAATTACTGATCTA
ACAACATTTTATGCCTCTAAAATGCTCCCTTCACATGCTTTTTATAAGgg
aaattttataagaacgcgAGGCTTAGTTAGTGTCAAAGTCCTagaataaa
tgaaaacaaaataaaaaagagaacttttcgaaaagttttaAGAGCATATC
AGACCATtcaattttatatccatacagaggGTGGATgaacattttcaggg
ggtaatCCGAGAGGAATTATCAGGGGGTCTAATGGAGTGATTTTTTCCAc
agggtaaaaagttattctaaagtTTTCAGGGGGTaagagactgattttag
ttAGTCCCGTCATTATAAGGTATGTaagaaattttctaaatttttttttg
caaattttgccattttccaggggtacCCATACATTTCCAAgaattctttt
ttataattgaaaaggttcgtccaccccaaTGTACGGATTTTTTTAACGGG
ACAGCCATTTGTTATGAAAAACTTTCCTGTTCCGATTGCTCAACTTCTTG
GTCCGCAACCGATTTTcgttgaatttcaaattttcttctttatcttgAGC
TTATTATTGcaactttcaatttttatcaagagacaaatttgttttagttc
gaaaattatatttcatttgttttttctttcaatgaaaTTAAATATGATTG
TTAAATAGATTTTAATAGTAGTAAATATTGTAATTTATAGTTTTTCTTGT
TGTCACTTatacataaattatttttttctttttcaacagCTATTGTTTAT
AAAACCGAAATGCAAATTCACTTGCAAAGTAAGAAAACATCGTCGTATTT
TGTTTAATGTAAAACTGAGCCCACTGGCGCATCCAAATTAtcttattata
aatattttcaacaataccctaacaggaaaat
Run BLAST on NCBI

transcript from alignment at sc0000363:277573..281923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020706 ID=TCONS_00020706|Name=TCONS_00020706|organism=Clytia hemisphaerica|type=transcript|length=4351bp|location=Sequence derived from alignment at sc0000363:277573..281923- (Clytia hemisphaerica)
TTCCAGGGTATAAAATATCTGACAGACCATAACATTATTGAAGAAGAAAC
GGAAGAAGTTGCTAAATTCATACATCACACATCTTCACTATCCAATAAAT
CTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCCTTATTCTTTCAGAGA
TTCATAATGAACACCGAAGGAAAATTATTCAGAACACTGTATTTTGCTTG
AATTATCTTTTCTACTTGCTTTACTCTGGACATTCCTCTTGGTATTTTTG
AAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGAAAAATGAATTCNTTC
CAAGGTCTTAAGGTTCCACCGTTTTTATCAAAAGATTCTAGAATATGTAG
GTTCGAAAAATGTAGGGAGGTCTGGGAGCACTGTTAACCCTGATCTGGTC
CAAGGCAGAGTCATAGTGGAAGTGTAGGGAGTGGTAGAATTAAGTGCTAA
ATTATTGAATACTTGATTGAAGAGTTTCTTTACCTCTTTACCTTTTTCCA
CAGCCAATTTTTTTTCTTGAAGATTCAACCTGATTCAATATAACAACTCA
ATTCAAGATTGAGTGACCCGGTAGCAGAAAATCCCTAGAAGTTTGCCTGC
AATTAACGGATCTTGGCTTCATTAAAACTAAGCCTTTTGGTTCACACACT
CTTTAAATAAAATTTGACAATTTATTGTTTTCTTTGAATCATATTTTTTT
CTTTTTTTTTAGAAACCAATTTTCAAGAACCTATACTTATCATTAGATGA
AGCTACTCTTATATTTGGATTCCGCCCTCATCAGGTACTAAATTACATCC
TGAAATTTTAATGAATTTTTAGTTTTTCTTCTTACAATAATGATGAAGCA
AGTTTTTCTGTCTTTATCCCATAGACTAAATACCGTCCTTATTAGATTTG
CATCCTAGTAACAGATAACAAGCCTTGAGAGAAGAAGTTTCATAAAATTG
GACTCTCTTTTTTGACATTTCGTCCAGTCGTACCAAAGCAAATTTCCGTA
CTGGATATAACAGAGTGCTTCTTTAAATTGAAGCTTCATATTATTCTGTT
TTCCAGGGTATAAAATATCTGACAGACCATAACATTATTGAAGAAGAAAC
GGAAGAAGTTGCTAAATTCATACATCACACATCTTCACTATCCAATAAAT
CTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCCTTATTCTTTCAGAGA
TTCATAATGAACACCGAAGGAAAATTATTCAGAACACTGTATTTTGCTTG
AATTATCTTTTCTACTTGCTTTACTCTGGACATTCCTCTTGGTATTTTTG
AAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGAAAAATGAATTCACTT
TCAGTTTTCTCATACCACTTCTTATTTCAAAAAAATTACTGATTGTCCTT
AGAAAAAATCAAGACCAGTACCTATATTCAAGGACTTGAAGTGATTTCTC
ATAGCTCTTCTTCTTCCCTTTCAGGAGAGAAGTGTTGGATCTTTTAGTCA
TGTATATGAATTTTACTGGTTTTACCATATGTGACGGGCTTAGGTAAAGT
TTGTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTGTGTTTG
TTCGTCCGTCCGTTCGTCCGTTCGTCCGTTCGTTCGTCTGTTACCAACTT
TTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTGCA
AAATGGTGATGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAAAA
TTTTGGGGCCAATTTGGGCAAAAAAACGGATGTGAATCCGAATGTGAAAA
ATTGGATCATTAATTTTTTCAGATTTTTTGTACGAAAGTAGGGTACCATC
ATAGGTAAAAGATGGTTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCT
CAAAAAACGCATGTTTATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAATTTTGGTTTCTAA
ACGTTTTTTTTATAAGAAACAAACGACTAATTTTGAGAGATCGTCACTAT
TTGTGTTCTGAATGATTGTTTAACGGTCATGTAGGTAGATATCAATTATA
TTTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTGTC
TTGTATCCAAGATCAAGCACTTTGAAAATATTTTGACACTATCCACATCT
CAAATATATAAACTCCAGAGCTACCTTTGAAATTTCTATGGAAGGTAGAG
TCCTAGAGTAATAATTTTCAATCTTTTTTTTTCTGACAGGAAATTTTTCA
AGAAAATTCACCCACCAGAGGAACGAGGCAATTTCTTAGATGTCTTGATA
GAGAAATTTTCACATCGATTCATTGAATGCAATCCCACGTCAGATCTCAA
CCAAGGTAAAAAAGGAGAAAGTTTTGATTAAAATTTATTTCTTACAGGGG
AAATTTTATTTAAAATTCTTTTGCTTCTATCCCTATCTTAAAACATAATG
CAATAAACTTGAAATGTCAGTCAGTTTTTAAACTCTTAAATCTTCTAATC
TTGCAACTCTACATGTGCAAAACATTCTGACACCTTTCTTTAGAGATAGG
ATAGATAATAGGTCAGAATCGCTGATTGACAAAAGATTTTTTCCTCTCTG
AACACTAAGCAAAGAAATATAGTTTCAATCAGCGATTCCAACTTTCTTAT
TATTCCAAACTCTGAAAAGGTTGTCGAAATTAGATGATTTAGTCGACATC
AGACCAGCTTACGGTAGATATTCATTGCATATTCAACCTTTGACCTGAAT
GTTTATTTAATAACATGATTATATTTTGTGTGTTAATCATACTAAGCAAT
ATTATCTTGTCATAATCTCTTTTATTTTAGAGCATATATCTGTGTTGTGT
TATTCATTGATGTTATTAAGTGTCGACTTGTACAGCCCACATGTTCGAAA
CAAAATGTCGAAACGTGAATATATTAAGAACAATCATCAAGTTTTAAATG
GTGAAGTTAGTCGAGAGACACTTGGTGATTTTTACGACGATGTTTATTTA
AATGGACACATAGTGCCTTCTCATTGTAAACAAGTCAATAAACGGAAAGG
TGGCAAACGACAGCATTGCTTTCCATTTTATAGACCCTATGGTGCCATCT
TTGAGATAAAACCGATAGAACTGAAGCTGTTGAGTTGTAACTGCTGATAG
TTTCGGGTTTTAGATTGTATAGATATTTTTTGATACAGGGATGAAATATG
TGGTCGGAATTACTGATCTAACAACATTTTATGCCTCTAAAATGCTCCCT
TCACATGCTTTTTATAAGGGAAATTTTATAAGAACGCGAGGCTTAGTTAG
TGTCAAAGTCCTAGAATAAATGAAAACAAAATAAAAAAGAGAACTTTTCG
AAAAGTTTTAAGAGCATATCAGACCATTCAATTTTATATCCATACAGAGG
GTGGATGAACATTTTCAGGGGGTAATCCGAGAGGAATTATCAGGGGGTCT
AATGGAGTGATTTTTTCCACAGGGTAAAAAGTTATTCTAAAGTTTTCAGG
GGGTAAGAGACTGATTTTAGTTAGTCCCGTCATTATAAGGTATGTAAGAA
ATTTTCTAAATTTTTTTTTGCAAATTTTGCCATTTTCCAGGGGTACCCAT
ACATTTCCAAGAATTCTTTTTTATAATTGAAAAGGTTCGTCCACCCCAAT
GTACGGATTTTTTTAACGGGACAGCCATTTGTTATGAAAAACTTTCCTGT
TCCGATTGCTCAACTTCTTGGTCCGCAACCGATTTTCGTTGAATTTCAAA
TTTTCTTCTTTATCTTGAGCTTATTATTGCAACTTTCAATTTTTATCAAG
AGACAAATTTGTTTTAGTTCGAAAATTATATTTCATTTGTTTTTTCTTTC
AATGAAATTAAATATGATTGTTAAATAGATTTTAATAGTAGTAAATATTG
TAATTTATAGTTTTTCTTGTTGTCACTTATACATAAATTATTTTTTTCTT
TTTCAACAGCTATTGTTTATAAAACCGAAATGCAAATTCACTTGCAAAGT
AAGAAAACATCGTCGTATTTTGTTTAATGTAAAACTGAGCCCACTGGCGC
ATCCAAATTATCTTATTATAAATATTTTCAACAATACCCTAACAGGAAAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011613XLOC_011613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020706-exon-sc0000363-1575043694:281799..281923TCONS_00020706-exon-sc0000363-1575043694:281799..281923Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1575043694:280381..280449TCONS_00020706-exon-sc0000363-1575043694:280381..280449Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1575043694:279319..279434TCONS_00020706-exon-sc0000363-1575043694:279319..279434Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1575043694:277573..278843TCONS_00020706-exon-sc0000363-1575043694:277573..278843Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1510915933:281799..281923TCONS_00020706-exon-sc0000363-1510915933:281799..281923Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1510915933:280381..280449TCONS_00020706-exon-sc0000363-1510915933:280381..280449Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1510915933:279319..279434TCONS_00020706-exon-sc0000363-1510915933:279319..279434Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1510915933:277573..278843TCONS_00020706-exon-sc0000363-1510915933:277573..278843Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1491911889:281799..281923TCONS_00020706-exon-sc0000363-1491911889:281799..281923Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1491911889:280381..280449TCONS_00020706-exon-sc0000363-1491911889:280381..280449Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1491911889:279319..279434TCONS_00020706-exon-sc0000363-1491911889:279319..279434Clytia hemisphaericaexon
TCONS_00020706-exon-sc0000363-1491911889:277573..278843TCONS_00020706-exon-sc0000363-1491911889:277573..278843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:277573..281923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.05402e-08	0	0	0	0	0.855818	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00020706 vs. Swiss-Prot (Human)
Match: FBX8 (F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.866e-42
Identity = 78/168 (46.43%), Postives = 111/168 (66.07%), Query Frame = 1 
Query:    4 QGIKYLTDHNIIEEETEEVAKFIHHTSSLSNKSLTKYLKDKREVLDLLVMYMNFTGFTICDGLRKFFKKIHPPEERGNFLDVLIEKFSHRFIECNP----TSDLNQEHISVLCYSLMLLSVDLYSPHVRNKMSKREYIKNNHQVLNGEVSRETLGDFYDDVYLNGHIV 495
            +G+ Y     I+++  +E+AKFI  T +L+ K L  YL ++R+VLD LV   NF    + + LR+FF+ IH PEERG +L+ LI KFSHRF  CNP       L+ + + VLCYSL+LLS+DL SPHV+NKMSKRE+I+N  +     +S + +G  YD++YL GH+ 
Sbjct:  152 EGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQN-ISEDFVGHLYDNIYLIGHVA 318
The following BLAST results are available for this feature:
BLAST of TCONS_00020706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX82.866e-4246.43F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2... [more]
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