TCONS_00020669 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020669
Unique Name	TCONS_00020669
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1755

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000363:92411..109924+
coding sequence from alignment at sc0000363:92411..109924+

transcript sequence

>TCONS_00020669 ID=TCONS_00020669|Name=TCONS_00020669|organism=Clytia hemisphaerica|type=transcript|length=1755bp
CGAAAATCTTATTTCTTCGGTGAATTTTTCCCAGCTTTTCTCCACTCGAA
TTCAACATGGCGGGGAAATGTGGGCATGATCATCGCCATGAAACCAAACC
AGACGAACTTGGAAATCTCTACACTCTTTTCACTAAGATTGATTTGGAAA
GAGTACAATGCTTGAATGAATGCTCAGAGGGATCGGGAAGAGTGGTTTTC
AAACCATGGGACAAGAGACTAGATACAACACAgctTGTTGAGAGTGACTG
TGATGAGGAACTACTTTTCAATATTCcTTTTACAGGATCAGTGAAGCTGA
AAGGAATCATTGTCGTGGGTGGCGAAGATTCCTATCatccatcaaaaatg
agaattttcaaaaacagaCCAAACATGACTTTTGATGATGCTAGTGGAAA
AGCGGACCAAGAATTTGACATGCAACCTGATCATAAAGGTGTTTTGGAAT
ATATACCAACTATTGCAAGGTTAGAAAAATGAGTATTGTAGATTCAGAAA
CCaaaaattatctttcaaatgTTGTATCTGCATTCTCTCCTGGTATACGT
TATGCTTGTGCATATGGATCAGGTGTATTCAAACAAAGTGGGCACCAGTC
TATCAAAGATAATATGATTGATTTCATATTTGTTGTAAATGATGCATTTT
CATGGCACCAACAAACCCTGAAAAAATACCCTGACCATTATTCCATAGTC
AAACGCCTTGGACCAAAAGGGCTTTCTGATTATCAAAGAAGTTTTGGAGc
tggtgtattttttaatacatgTGTTGAATTTGATGATCGCTTAATTAAGT
ATGGTATCATTGATATGGAAATGTTTGTTGATGATTTACTGGAATGGAAA
GACCTGTATATAGCTGGTAGGCTTCACAAACCAGTTTACACTTTGAAAGG
TTTGGATAACCCTCTTATTGAAAAACCGTTTTCAGCAAATCTTAAATCAG
CTGTTTTGACCTCCATATTCTTATTGGATGAGAAATGTTCAATGGAAGAG
TTATTCATCAAGATTGCCAGTCTCTCCTACACGGGTGATCCAAGGATGAT
TGTGGGAGAAGATAAAGGAAAAGTGAGAAACATTGTGACCCCTAACATAG
AAAAATTTCATACTCTCTACGAccctattttgaaaaatatatctaaTATT
AATGTGAACAATTCTTCTATCATACAAGATATGGACCCACTTCAAAGATT
TGAGCTTTTACAAGAACTTCCTAAGAATTTGAATACATTAGTTCTTAGAA
ACTTGAATCTAAATAACAAAGCAAAGGACTTTCAGAAACGATTTATTGAT
TTGTCAaatgagaaaatcaaagaatcaTTTGCCAAAGCTGTTAGTGATAT
TGTCAGAAGTTCAAGTACAACACAGACTATCAAAAACTCAACTACGGCCG
GTGTCCAAAAATCACTTTATTACGGtggccagaaaatgaaaaagatgttC
AAAGGATTGATTAGAAAATGATTGTTGATGATATAATTTTAAGGAGAATG
CTttaaacaaagattttgtaattattttgtTATATAAATTAGAATAATTT
TGAATGCTTTTTTTACACTTACGTCAGCTGGTAATGGACCAAGCTCTTCA
AAATTCCTTATTtattcattgaatatttcgatatgtttttactttaactt
ttctaCACAATCTAAAAAACTTGCATACAAGACTCAATTTTAATATTAGA
CTCGGTTATATTGGAAATTATACTTTGATGATGGAAATGTTCCAAAATAT
ATGAG

Run BLAST on NCBI

protein sequence of TCONS_00020669-protein

>TCONS_00020669-protein ID=TCONS_00020669-protein|Name=TCONS_00020669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MSIVDSETKNYLSNVVSAFSPGIRYACAYGSGVFKQSGHQSIKDNMIDFI
FVVNDAFSWHQQTLKKYPDHYSIVKRLGPKGLSDYQRSFGAGVFFNTCVE
FDDRLIKYGIIDMEMFVDDLLEWKDLYIAGRLHKPVYTLKGLDNPLIEKP
FSANLKSAVLTSIFLLDEKCSMEELFIKIASLSYTGDPRMIVGEDKGKVR
NIVTPNIEKFHTLYDPILKNISNINVNNSSIIQDMDPLQRFELLQELPKN
LNTLVLRNLNLNNKAKDFQKRFIDLSNEKIKESFAKAVSDIVRSSSTTQT
IKNSTTAGVQKSLYYGGQKMKKMFKGLIRK

Run BLAST on NCBI

transcript from alignment at sc0000363:92411..109924+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020669 ID=TCONS_00020669|Name=TCONS_00020669|organism=Clytia hemisphaerica|type=transcript|length=17514bp|location=Sequence derived from alignment at sc0000363:92411..109924+ (Clytia hemisphaerica)
CGAAAATCTTATTTCTTCGGTGAATTTTTCCCAGCTTTTCTCCACTCGAA
TTCAACATGGCGGGGAAATGTGGGCATGATCATCGCCATGAAACCAAACC
AGACGAACTTGGAAATCTCTACACTCTTTTCACTAAGATTGATTTGGAAA
GAGTACAATGCTTGAATGAATGCTCAGAGGGATCGGGAAGAGTGGTTTTC
AAACCATGGGACAAGAGACTAGATACAACACAggtatttctttagttttt
gaaataaaataatttgaactttgaaaaaaaaattttttatacaaGTTGTC
CGATATGTACATATCTTTGTTCTATGCTTACTTTCCAACATTTACTATTT
ATACTGTAAACACACAAAGTGCAATATATTGATCGCACGTAAGCGcatca
aaacaccagcttttcaCTATAGAGAAAGTGTCTACTTTGcttctattgtt
tcattttcaaaacaaagttaaaacgcatgcgtatatttttatttcataaa
cTGTTAGTCGTTATTCATATTATACGCAAAACACAAAGAGAATGAATACA
CGTACCgacaactgctctaacttgggactatctgacaaaaaacattggac
agcaattcggccaccatttcactgaacctccaaagtcatttgatttgagt
taatgaacgacgtattaaaaaatacacaatatttctcttttgcaccgagt
aggcttttaaattgaaatatgaaagttgttccgtagtggaacacacacgC
AAATGTccggaacgaagaagaccaaattagtggcaaaacgatggagcatt
tgacgtcactcgcaccGCAACttacacacttgttatttgttaatcccatc
taGCGATAGacagcgggcgttctctaattcccCAATCGGCGTcatccggt
cattttgaatgaaaacaaaaaatggcgcgctcagtcaggacctcatttca
ctttatcgatattacgtaaacagcagtgtgcgctaaataatcttggtttc
gctttcgatttcaagcaaaggtcttagcaacagggcgcgcggaCATAGCA
acagggctgggtagaaaatctgaacatagaattcaaaaaaaataccgatc
atcgtatagagcacttaaaaataccccctttctatgtttagtttgttcta
ccttggattgtaactgaaaatatcttcaaaaaacctttgtccgctatcag
cccgcgcggtaatctttgcccacttcaattcttagataatgaataagaga
ggtgtgCTTAGCTAggccgtgctcgcgggcgataaatttatgtttactta
tcttgtatactttagtggtatttatccaatgaaaaggatgttgacaaaat
atgcacggcgctgacaaaatatgcacggcgctgacaaaatatgcacggcg
ctgacaaaatatgcacggcgctgccaaaatatgcacggcattgattatga
catcattaaatatgtcaatgtcgattcaacgcccgttaaagaaaataatt
cgtagatagttctttttatcttgaaatttagaaatacgaacaaaaaaaga
atcaaatttaatatttgtttcctatctagattatattagcattacagaat
acggtaaattttcacgaaaaatatttcgcgatggtggtacgcccaatcgc
gcccactggaaagttccaatttttaattatcaggaaatcggggaaaccgg
ttcaccacgtggataaaatacgtacggaatgaaacctgacagaaggtttt
caaccagatttattgtgacatgttatgacagaaagtatgattgataaact
tggtggagttatcaaaacaaatttgttgtcaaagagatttaacagtaagt
gaaaatacaggccagatatccagtcccatgtttcagcCAATGGtctcaag
ttagagcagttgacggtaggtAGGGGGTGGTACAATCACTTTCGGTCGGG
TGGGGTTGTGGATGGTAAAATTAGTCGTTCTTTTTTAATGTTGTGAAGTA
GGCACTttctcccccctcttttttgagttttgtctcgtttacccaaacac
TTTGCAAAGTGATGCAAACCAACAGTTCCCAAAAAGTGACAAAGCCTGGT
ATAACTTTCCTGGAAACACAGGCAAAaatgggtttgtttacctccagaga
ccaaacggtgaaGAGCACCAAAATAATTCGCATGCATCTTTTTTGCCAAT
TACggacagttagtggaagtactttgatttttgaagcaTCTTTATGtcac
atagaacaaaagaaaatagcaaatgAACAAAAGAATTACCCTTAGCCACC
ATTTCGCAACCATGGGGAAACGCAATTTTACGGAAATGGGTATCCTCATA
TCAAATAAAGCATCTTCCGAAAATTTTATTCTTACCCATAAAtgccagtt
tgcagagtatgcAAGGCTGCACTCGAGGAAAAATTCAGAAATACCAAGTT
CCGCACTGGAAGAGCACAACTGATAAACTTTGGTCCAAACAACGTGCACC
TATACCTTGGAATTTGgcccaaaatgacaaaaaattgctaaaattagctg
CACTTGAGGAGAAAATAGCGGAACTCTGCCCTTGGGGTTAAAAGCCTGTC
TTCACTTGCAcctaaaaatctcaaattttgcACATGCACTCGACTTTTTC
CGAGATTTTGAGCAAACACACTGCAAACTGGCAtaaatgcaaaaataaaa
aatgaagaaggttTCGTTTTCTGAtcgtctttttaatctgccatgaaatg
ttataaaattccttatagaaaGACACATTCTCCTGCAGAGAGGCTTCAAA
AAGATGatgtagaaaaaagttgttaaaaagtatgtcattttatcttaaca
atatttaagttttatgaCTTGTTCTCGCTCGTTTGGTAGTAAAAAGAACA
TGCTTAAAATGAGGTACTTCCACTAATTGCTGGGAAAGGcgtatataaaa
aaagaattttgagcaaatttgtgccaaaaagtgcctaaaaatagCTAGGG
TTTTATTGGACTTTGTGTGAGATTGCTTCAatagtttttcagattttttg
cataaagatagaAGGCAAAGGTctttcaggaaaatttttttagccGTAGA
cttcagattttcttatttggggaaattcccttttatcatttttagggaaa
attagCATTTCTCGTGATTgccttggtatttttttctgattttttgcaca
atgatgtaaaatggtaatgttcaaaatctgatggagcccgttgaaaaaat
aatattatgggcaaatttgggccaaaaatgcctaaaaatggAGTTTTCtt
gactttgtgtgaaattgcttcattagttttgtGGCGTTACAGGAATTGAC
GCTGTTTGTAACTTTGTTTGTAATCtttgattgatatttttgttgatgTG
ATGTGTTCAAACTGTAGAAATAAATAACAAAGGTCTATGAGTGttgtgtt
tataaaaaataagtctaagttcaaaaatgaaaatgtctgaattcaatgaa
aaagtataagtctgattgaaaaatgaaaaagtataaGTCTGATTGAAAAA
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NNNNNNNNNNNNNNNNNNNNGTGTAGGTTCTGCATCAACTTGGATCTCAG
GTCATGGAGATTGATACGCATCTCCTTGCATCCCTTCAGAAGTTGACTAC
CCTCATCGCACAATAGGCATTTTGGATAGCCATGGTCGCATGAAAATCTC
GTGAATGCTTGTATGAAAGAGGTGGTTGAATAATCGTCCatgacttttat
tttgattgCAGATGTAGCACAACAGCAAAATACTATAAGCCATATTTTGA
CGGTAGTACGTTTGTGACTTGGTGAAAATGACTGATACGGTCCAGACAGA
TCTAACTGTGTGTAGTAAAATGAGGGAGCAATGGTTAGATTGAAGGATGA
TACTGGTCCCATTGCCATCTCCACAGTGCGTTTAGCGANNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNGATGGGCGATCTTGATTGATTCTTCTCCTG
TTAGACAATCATCGACATAAACATCTTCATTGACGATGCGATAAACTTCA
GGATATTGATCTTGAAATAAGTAGGCAATCTGACGAAGTCCTCGCTCCGC
TTGATTTCCGCTGGATCTGATTCCATAGATTAGTGTTTTGATCACTTTTT
CCATTGGTGTCTTTGATGAGTCAAGTTCTTGGTGCCAAATATAACGCTGA
TAGCACCAATGGTCTGGGTTGAGGTGGATGGTGTTGTACATCTTGCATAC
ATCGGTATGTATGCCAATTTTATGAGTTGACCAGCGTAGAAGTACTTCTT
GCAGCTTGTTTAGATTGTTGCTTCCTTTGGCAAGGCAGTCGTTTAAGCTG
TAACCAGATGCAGTAGGGAAGGAAGCATCGAATACAATACGACATGGTGT
GCTGAGCGAAGTTGATTTCCAAACTGCACGCCATGGGATGAAGTTTTGAA
TTGAGTTTGCGTGAAGTGATTGACGGATGTCTTCTGATAAGTTGCTGACA
TAATCCACAAAGCCCATGCTCTGTAGCTTTGCTTCAGACTTCAGGATATC
TTCCTTGTCTTTAGAGTTGCGATCAAGTTTCCTCAGCTGCTGGTAGTAGA
TCTTCTGTGCGATTGATTTGTTTGGGGTGAGCTTGACATCAGCCTCTTCG
ATGAATGGCAGTTTTGCTGTGATGGTCTGATTGTTGGTATCAATTGTGAT
GGAAGAATTGATGATTTCTTGTTCTATCTCCTCCCTGATGCTGATTGCTT
CTTGATGGCTTGATTGCTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNATTTCCAAGGTGcaacaaattttttgtttcatgatttataaatt
aaattttgtactttttatttttgttttagaaatatattttgataaaagtc
actttacaagttttttctgattttttaaataattatgcAAATTGGTAATC
CTTACAGATCCTTAAAATGTGAGaattcaagattttcaaaagaaaaaagt
tttaacatttaagcaaatttgggccaattttGGATTTGTGGAAGTTGTTT
CATTCAAGTTTATCTTTCAACGTGAAACAAGTTGCATCATGTTTTCAAGC
TTACACATCTCTATGCTATGctgttatcttttcttttttatttttaaagc
attttgattttgactcaGCATGTTTCCAACTAGCTATATCtagtaggtcc
attcagcatggtCAGTGttgcaaataaggaaatttcatttggccggtaat
tttttgAGCATAGAGAATGATTTGagcatttagaaaattttgtctaaaat
aacctttagattggctaaaaacctattttaattcaaaatctaTTACCTTA
TTAATTTGAAGAGCTATTAAGCATTTATCTAAGCCTCTagtcttcaaatt
ttaaccggacaaTATGAAAAAACTGAGCTTCAGAATGGCAAATGGTAGAA
ACTACGAAATGACCGGTATTTACCGGTCACCAGGcattatttgcagcact
gatgATGCTTGTTTCtgtaaaaaggaaaattattttttgttcccTCTCAT
CAGTTCTAATAAGTTTGTTTTTAGTTATTCCCGTCAAAGCTCATGTGATA
TTCTTTATCGCAATTACCCgcttcaattgaattttcactaTGCACCCTTA
AAAGTAAttgagttttagaaaaacaataacagaCAGTGTTATTTATTTGG
CGACGAATTGCCCTTTAAAGTCGGATAACagtatcttttttcaaaagaag
tgaTTGTTAAATTGCATTCTTGTTGTCCTTTCAATGATTTGTTTTGTTCA
ACTTTGATGGGGAATATTGTAAACCTTGGATTTTTCCAATAGCAGTTATC
TAGGGCATCAGAATTTAGAAAGCGTAGTCAAATTTAAAACCtctcattgg
acttttccagaaaaaaaccgtataccccctgttgaggaggcccatttccg
ttccaaaggggtaaggtttgatatgtggcagaattccatagggagataca
aaaataactggaattccatgggtgTACCTTTTTAAAtccttctaaaattc
aaaattccagaggggtttaaaaaAGCCCATTGTgagaaattttatcccat
ttgtAGACGCAAGTAATTATACCGttagtaatttgttattcaatgaACTG
TCATGTCTGAGTAAAATCATTAATTATTATAAATGAAAAAGGTTTTACAA
CTAATGATAATAACAGTAATagcacgatgagttattttttcttatttggc
gcgtCTTCAAaaagagcaattaatcgttaattgcatcctgtagagagcaa
ttaatcgttaatcacactcttcaatacCGCGCCAATGTTGATTTTAATGT
GTTTTTTTATCGAACGTTTATAAttaattttgtgagaaagaaaatccata
aacaacaataaaagaaaaacataaagagaagagaaaaatataaaactttc
agtgtaatttacATTTCTAACGGGGAAAAGTAGTGAAAcacattgtgcga
ttagctcgtaatcacatgataacgagtgcaatttgaaaataattgcaata
gtgatttttttgttgttaattTTCCGAGCCcaaaaggacgaggaaaattc
gaaccaaaaaaatcacgagtgcaattttcgaattgtacgagttattatgt
aaTAATATACTAATTATTGGTAAGTCATAGGGATACTGTTAATTTTACTT
TTGATTTAATTCCCATATTAGTACTTTCACAATGCAGGATATGATCATCT
TATCTTTAGAGTTTAGAATTAAATTTATATATAGAGATACTGATAACttt
gtattatttttatttgaaccAATCATAACATACAATAAATACATGgcatt
attttttacttttagctTGTTGAGAGTGACTGTGATGAGGAACTACTTTT
CAATATTCcgtaagtttttatttctgtaaGTGCTTCAtttatgaatttca
aaaaagcataatgttcaaattcaaattatttGTCAAATTGATTCTTTGAC
GTAACAAATTGTCTTTTATCTTTCAATCTAATTTGttgtatcaaaaaaaa
tttttccaatcttgtttacatttttaaattttatgaataGTTTTACAGGA
TCAGTGAAGCTGAAAGGAATCATTGTCGTGGGTGGCGAAGATTCCTATCa
tccatcaaaaatgagaattttcaaaaacagaCCAAACATGACTTTTGATG
ATGCTAGTGGAAAAGCGGACCAAGAATTTGACATGCAACCTGATCATAAA
GGTGTTTTGGAATATATACCAACTATTGCAAGGTTTGCTAATGTAGAACA
TTTGAGCATTCACTTTCCTACTAATTTTGGCGAAGAGACATCAAAAGTTT
ATTATATAGGATTAAAAGGAGACTTCATGAAAGCACATAAACATGGTGTA
ACAATATGTAATTACGAGGCTAAAGCAAATCCAGCTGATCACAAATCTGC
TGATTATAACCCAGCCTCTCATTCTGTAAATTAGGGATTTATTTATTACA
TctggattttttgttttgtactTACAGTAAATGCTTTATTACAGTCTTCA
GCTGTGTTGTGATGCCCAGCTTTGGGGCATATTCCTTGtttggaaaattt
atttatattttgaaattttttatattGGGTGACCCGCACTCTATTAGAGT
GTATAAAGGTTTGATATCTAGCAAGTCGATATGATATCTGATgtattctt
tttggacctaccgggaggtcctttaatttgaccgttgtccgttcgtctgt
tacaagcttttctcgggattggctcattagtttttttttattttttgcac
aatgatacaaaatagcaatgccttaaaagtgacggagcccgatttttgaa
aaaaaaatgttgggggcaaatttgggctgatttgggccaaaaactaccta
aaataaggttttttggactttgtgcaaaattgcttcattagtttttcctg
atttttggcagaaagatggagagcaagattctctaaaaagtgactgaagc
agtttttttcgggaaattttttttggccgtaaaaatctgttgttcttatt
tggggaaattcccttatgtcatttttagggaaaaagagcgtTTCTGGCGA
TTGGatcgatatttttttctgattttttgtactttgatgTAATGtggtaa
tatttaaaatctgatgaagtccgattttcaaaaaataatttttttggcgc
aaatttgggccaaaatgtgcctaaaaatggggttttctggtgtgaaattg
cttcattagttttttcaaatttttttggacaaagataaaAGGCAAGTATC
TCTAAAACGTAACTCAAGCTGTTTTTtccggaaataattttttggctgta
aaaatcggattttcttatttggggaaactcccttttgtcctatttaggga
aaatgagcatttctcgagattggcttggtgtttttttcttattttttgca
tagtgctataaatggtaatatttaatttctgatggagcttgattttcgaa
aaaataattttttgagcaaatttgggcagaaaagtgcctatattcaagct
gctcattacactttcttactctcttgctatttgtcctattgttatctgat
tttgatcaccaggtaggtccgttcagcatgttgcttgtttaaatttgaaC
CATAGTTAAAAGCATCAagtcaaaattcatttttcgatTCTGTAGGgcaa
aaaatgataattttattttttccttcaGGTTAGAAAAATGAGTATTGTAG
ATTCAGAAACCaaaaattatctttcaaatgTTGTATCTGCATTCTCTCCT
GGTATACGTTATGCTTGTGCATATGGATCAGGTGTATTCAAACAAAGTGG
GCACCAGTCTATCAAAGATAATATGATTGATTTCATATTTGTTGTAAATG
ATGCATTTTCATGGCACCAACAAACCCTGAAAAAATACCCTGACCATTAT
TCCATAGTCAAACGCCTTGGACCAAAAGGGCTTTCTGATTATCAAAGAAG
TTTTGGAGctggtgtattttttaatacatgTGTTGAATTTGATGATCGCT
TAATTAAGTATGGTATCATTGATATGGAAATGTTTGTTGATGATTTACTG
GAATGGAAAGACCTGTATATAGCTGGTAGGCTTCACAAACCAGTTTACAC
TTTGAAAGGTTTGGATAACCCTCTTATTGAAAAACCGTTTTCAGCAAATC
TTAAATCAGCTGTTTTGACCTCCATATTCTTATTGGATGAGAAATGTTCA
ATGGAAGAGTTATTCATCAAGATTGCCAGTCTCTCCTACACGGGTGATCC
AAGGATGATTGTGGGAGAAGATAAAGGAAAAGTGAGAAACATTGTGACCC
CTAACATAGAAAAATTTCATACTCTCTACGAccctattttgaaaaatata
tctaaTATTAATGTGAACAATTCTTCTATCATACAAGATATGGACCCACT
TCAAAGATTTGAGCTTTTACAAGAACTTCCTAAGAATTTGAATACATTAG
TTCTTAGAAACTTGAATCTAAATAACAAAGCAAAGGACTTTCAGAAACGA
TTTATTGATTTGTCAaatgagaaaatcaaagaatcaTTTGCCAAAGCTGT
TAGTGATATTGTCAGAAGTTCAAGTACAACACAGACTATCAAAAACTCAA
CTACGGCCGGTGTCCAAAAATCACTTTATTACGGtggccagaaaatgaaa
aagatgttCAAAGGATTGATTAGAAAATGATTGTTGATGATATAATTTTA
AGGAGAATGCTttaaacaaagattttgtaattattttgtTATATAAATTA
GAATAATTTTGAATGCTTTTTTTACACTTACGTCAGCTGGTAATGGACCA
AGCTCTTCAAAATTCCTTATTtattcattgaatatttcgatatgttttta
ctttaacttttctaCACAATCTAAAAAACTTGCATACAAGACTCAATTTT
AATATTAGACTCGGTTATATTGGAAATTATACTTTGATGATGGAAATGTT
CCAAAATATATGAG

Coding sequence (CDS) from alignment at sc0000363:92411..109924+

>TCONS_00020669 ID=TCONS_00020669|Name=TCONS_00020669|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at sc0000363:92411..109924+ (Clytia hemisphaerica)
ATGAGTATTGTAGATTCAGAAACCaaaaattatctttcaaatgTTGTATC
TGCATTCTCTCCTGGTATACGTTATGCTTGTGCATATGGATCAGGTGTAT
TCAAACAAAGTGGGCACCAGTCTATCAAAGATAATATGATTGATTTCATA
TTTGTTGTAAATGATGCATTTTCATGGCACCAACAAACCCTGAAAAAATA
CCCTGACCATTATTCCATAGTCAAACGCCTTGGACCAAAAGGGCTTTCTG
ATTATCAAAGAAGTTTTGGAGctggtgtattttttaatacatgTGTTGAA
TTTGATGATCGCTTAATTAAGTATGGTATCATTGATATGGAAATGTTTGT
TGATGATTTACTGGAATGGAAAGACCTGTATATAGCTGGTAGGCTTCACA
AACCAGTTTACACTTTGAAAGGTTTGGATAACCCTCTTATTGAAAAACCG
TTTTCAGCAAATCTTAAATCAGCTGTTTTGACCTCCATATTCTTATTGGA
TGAGAAATGTTCAATGGAAGAGTTATTCATCAAGATTGCCAGTCTCTCCT
ACACGGGTGATCCAAGGATGATTGTGGGAGAAGATAAAGGAAAAGTGAGA
AACATTGTGACCCCTAACATAGAAAAATTTCATACTCTCTACGAccctat
tttgaaaaatatatctaaTATTAATGTGAACAATTCTTCTATCATACAAG
ATATGGACCCACTTCAAAGATTTGAGCTTTTACAAGAACTTCCTAAGAAT
TTGAATACATTAGTTCTTAGAAACTTGAATCTAAATAACAAAGCAAAGGA
CTTTCAGAAACGATTTATTGATTTGTCAaatgagaaaatcaaagaatcaT
TTGCCAAAGCTGTTAGTGATATTGTCAGAAGTTCAAGTACAACACAGACT
ATCAAAAACTCAACTACGGCCGGTGTCCAAAAATCACTTTATTACGGtgg
ccagaaaatgaaaaagatgttCAAAGGATTGATTAGAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011597	XLOC_011597	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00020669-exon-sc0000363-1491911889:92411..92643	TCONS_00020669-exon-sc0000363-1491911889:92411..92643	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1510915933:92411..92643	TCONS_00020669-exon-sc0000363-1510915933:92411..92643	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1575043694:92411..92643	TCONS_00020669-exon-sc0000363-1575043694:92411..92643	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1491911889:106776..106819	TCONS_00020669-exon-sc0000363-1491911889:106776..106819	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1510915933:106776..106819	TCONS_00020669-exon-sc0000363-1510915933:106776..106819	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1575043694:106776..106819	TCONS_00020669-exon-sc0000363-1575043694:106776..106819	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1491911889:107001..107192	TCONS_00020669-exon-sc0000363-1491911889:107001..107192	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1510915933:107001..107192	TCONS_00020669-exon-sc0000363-1510915933:107001..107192	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1575043694:107001..107192	TCONS_00020669-exon-sc0000363-1575043694:107001..107192	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1491911889:108639..109924	TCONS_00020669-exon-sc0000363-1491911889:108639..109924	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1510915933:108639..109924	TCONS_00020669-exon-sc0000363-1510915933:108639..109924	Clytia hemisphaerica	exon
TCONS_00020669-exon-sc0000363-1575043694:108639..109924	TCONS_00020669-exon-sc0000363-1575043694:108639..109924	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00020669-protein	TCONS_00020669-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000363	supercontig	sc0000363:92411..109924 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.3394	51.7559	16.5536	7.26073	6.10516	4.6315	2.92538	2.52887	4.91289	5.45044	5.74566	4.15068	5.36625	5.00203	6.5223	7.31593	9.60359	10.0499	4.34717	3.7998	4.93185	4.62185	46.9231	40.1049	4.01355	2.99495	7.13017	6.26975	20.185	23.7962

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR015222	Tam41

Vocabulary: **Molecular Function**
Term	Definition
GO:0004605	phosphatidate cytidylyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0032049	cardiolipin biosynthetic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032049	cardiolipin biosynthetic process
molecular_function	GO:0004605	phosphatidate cytidylyltransferase activity

Blast

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BLAST of TCONS_00020669 vs. Swiss-Prot (Human)
Match: TAM41 (Phosphatidate cytidylyltransferase, mitochondrial OS=Homo sapiens GN=TAMM41 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 2.492e-60
Identity = 119/298 (39.93%), Postives = 175/298 (58.72%), Query Frame = 2

Query:  521 VVSAFSPGIRYACAYGSGVFKQSGHQSIKDN-MIDFIFVVNDAFSWHQQTLKKYPDHYSIVKRLGPKGLSDYQRSFGAGVFFNTCVEFDDRLIKYGIIDMEMFVDDLLEWKDLYIAGRLHKPVYTLKGLDNPLIEKPFSANLKSAVLTSIFLLDEKCSMEELFIKIASLSYTGDPRMIVGEDKGKVRNIVTPNIEKFHTLYDPILKXXXXXXXXXXXXXQDMD--PLQRFELLQELPKXXXXXXXXXXXXXXKAKDFQKRFIDLSNEK-IKESFAKAVSDIVRSSSTTQTIKNSTTAG 1402
            ++S F   +  A  YGSGV++Q+G  S + N M+DF+F V+D  +WH + LKK   HYS +K LGPK ++  Q ++GAGV++N+ +  + RLIKYG+I   + ++DLL W +LYIAGRL KPV  +   ++  +      NLKSAV  +  +L E  S E+LFI+IA LSY+GD RM+VGEDK KV NIV PNI  F  LY  IL+    +   +     ++D  P  +F  L  LPK L   +   ++   K +D ++    ++++    +     +S IVR SS  Q+ K   TAG
Sbjct:   16 ILSHFPEELSLAFVYGSGVYRQAGPSSDQKNAMLDFVFTVDDPVAWHSKNLKKNWSHYSFLKVLGPKIITSIQNNYGAGVYYNSLIMCNGRLIKYGVISTNVLIEDLLNWNNLYIAGRLQKPVKIISVNEDVTLRSALDRNLKSAVTAAFLMLPESFSEEDLFIEIAGLSYSGDFRMVVGEDKTKVLNIVKPNIAHFRELYGSILQENPQVVYKSQQGWLEIDKSPEGQFTQLMTLPKTLQQQINHIMDPPGKNRDVEETLFQVAHDPDCGDVVRLGLSAIVRPSSIRQSTKGIFTAG 313

The following BLAST results are available for this feature:

BLAST of TCONS_00020669 vs. Swiss-Prot (Human)

BLAST of TCONS_00020669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TAM41	2.492e-60	39.93	Phosphatidate cytidylyltransferase, mitochondrial ...	[more]

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TCONS_00020669 (transcript) - C. hemisphaerica