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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020666 ID=TCONS_00020666|Name=TCONS_00020666|organism=Clytia hemisphaerica|type=transcript|length=2202bp
CATAAATGCTGCATAGGAAGATTTATAACATCACTTCTCGTCCAATGGGT
ATAATGGActgttccataaaatttccattttataGGGGTtggacaaacct
tttcaagtgaaaacaaatttcttggaaaagtgTAGATACTCCCTAGAAAT
GGCAAAACttgcaaaagaacccttggaaaaaattattttcatgtcttaaa
gtgagggtggacgatgaactaaaatcagtttttCACCCCTTGGAAAttca
agaataactttttaccccctggaaaaatttaaaaccaattctttaaaccc
ctggaaatttttctcggactaccccctggaaatgttcgtccacccccctg
tatggtcgtaaaatggaatggcccaataatCTATGGGTATTATATCTTAT
TaggaattttaagaaaattatattatgatgtattatattttttggcTATC
attcaatatttatatttttataaaatttggaatttttctttttcttttat
ttgggAATTTATACATAGTAATAGGAAGGTTcggaatattttcattttag
gagTAGGTTTTTGTCATTTCTATGACCAAatcattaaaagaattttttat
ttagaataTGAGAATTTCACTAAATCGTTGATGAGATCAGGTCCattatt
tttatattgaatgatattttttatattcaCTGTAAATTTTTTACATCACA
CCCAGAGGCGCTATAAGTAGgtgaaattctttaatttttgtcctattaaa
ataattttcattttctttttaaattttagtggTTTtcgaatttatcaaaa
ttttcaatctttctttATCGAACAacgtttttgaaagtttaaagaattca
ttttgattgatCAAGCAGTTCACTGCGGGGACACtatttattttcatgtt
ttctcACCCGTGATTCCCTTGTTGCTTGTAATACACCCTTTTTTATGGAA
TGTGAGTAGCTCCTCCATTTAGAGACATCATATGGAACAAGTTGGAGCTC
TATACTGCAAAGAGAGGACGATctattatttttgtattttaggaGAGTGA
GGATTCTCTTGTGTCGCTGAGGTCGCTTTTGAGTTGCGAGTAGTCCAAAA
TAACCATGAGTTGTTGTGGTTAAGAGATTTTCAGAGAAGGAGTTGAATGT
TGTCGCGCGGGAGAGGCTGGCCGGTCCTCTCCTGGCACGATAAgcgaata
tttatttttatgccCCAGGCTTTGAGATCTGACCCGCCGTTAGAAGACGG
GGAGGACTAGAATGTACAGTGGAATTCAGAGTGACAgtagagcaaagtag
acattaGTTTTTCTTCAATACATGTTTCACATAAATAGTTTCATTAAGAT
AAATAACATTCAGCTTATGATAAATTAATACTTCTCTATATACATATGTC
TGTGTCCAGACGTTGTCGATATCTCGAGATAGCGACTTGGCTCCTAGTGA
TTACCTTCTGACCTACGGTTCGGGCATCTTCTAAAAAGACATCCTCTGGG
CTTTCGTGGTTCATCTACAGGCATCCTATACAGCGGGCATCCTATACAGC
GGGCATGCGACCATGGTTCGCGCATCACCAAACGGTGGGAAATTGCGATC
GATCGCGGAAGTAGGCTTTGGCAGACCTGGTTCCTAGGATGGGGTCCGCA
GAAGTCTATGTTCGCGCGACTCTTGATTCTCCAAGTGACTCTGGGTGATC
TTCGTCCCAGGTCTTGCTCGGCCGAGCGCTAGTTGAGAATCCCTCGAGTT
TTCAATCTCGTTGAGATATAGTGATCTCATCCataattcatttttcttct
tcacatTCAACTACGTATTTTTCTNCTGATCTCATCCataattcattttt
cttcttcacatTCAACTACGCATTTTCCTATATATAAATCTCTCATGACA
ATATACCCACAGAACCGATTATGTTGAATTAGTTTTCATTCAGTTTCAAA
ATGCTTTCATAAACTTCCACTCAGTGTTCTCTTCAACACGGATACATGTT
CTTGCTTTTATAATTTTGGCATGAAATATTTTACACACACGTTTgtcttt
ctaattttttgttaattttttgctaGATTATTTTTACACTATATATATGA
TTTCTGTATTATATTTGGAATATAAGGTTTCAGTTTATTTTCGCGtttat
tgaatatatgtttttgcatctttcaaCCCATCAAGTTGATTTACATTATG
AT Run BLAST on NCBI transcript from alignment at sc0000359:277775..279976 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020666 ID=TCONS_00020666|Name=TCONS_00020666|organism=Clytia hemisphaerica|type=transcript|length=2202bp|location=Sequence derived from alignment at sc0000359:277775..279976 (Clytia hemisphaerica)
ATCATAATGTAAATCAACTTGATGGGttgaaagatgcaaaaacatatatt
caataaaCGCGAAAATAAACTGAAACCTTATATTCCAAATATAATACAGA
AATCATATATATAGTGTAAAAATAATCtagcaaaaaattaacaaaaaatt
agaaagacAAACGTGTGTGTAAAATATTTCATGCCAAAATTATAAAAGCA
AGAACATGTATCCGTGTTGAAGAGAACACTGAGTGGAAGTTTATGAAAGC
ATTTTGAAACTGAATGAAAACTAATTCAACATAATCGGTTCTGTGGGTAT
ATTGTCATGAGAGATTTATATATAGGAAAATGCGTAGTTGAatgtgaaga
agaaaaatgaattatGGATGAGATCAGNAGAAAAATACGTAGTTGAatgt
gaagaagaaaaatgaattatGGATGAGATCACTATATCTCAACGAGATTG
AAAACTCGAGGGATTCTCAACTAGCGCTCGGCCGAGCAAGACCTGGGACG
AAGATCACCCAGAGTCACTTGGAGAATCAAGAGTCGCGCGAACATAGACT
TCTGCGGACCCCATCCTAGGAACCAGGTCTGCCAAAGCCTACTTCCGCGA
TCGATCGCAATTTCCCACCGTTTGGTGATGCGCGAACCATGGTCGCATGC
CCGCTGTATAGGATGCCCGCTGTATAGGATGCCTGTAGATGAACCACGAA
AGCCCAGAGGATGTCTTTTTAGAAGATGCCCGAACCGTAGGTCAGAAGGT
AATCACTAGGAGCCAAGTCGCTATCTCGAGATATCGACAACGTCTGGACA
CAGACATATGTATATAGAGAAGTATTAATTTATCATAAGCTGAATGTTAT
TTATCTTAATGAAACTATTTATGTGAAACATGTATTGAAGAAAAACtaat
gtctactttgctctacTGTCACTCTGAATTCCACTGTACATTCTAGTCCT
CCCCGTCTTCTAACGGCGGGTCAGATCTCAAAGCCTGGggcataaaaata
aatattcgcTTATCGTGCCAGGAGAGGACCGGCCAGCCTCTCCCGCGCGA
CAACATTCAACTCCTTCTCTGAAAATCTCTTAACCACAACAACTCATGGT
TATTTTGGACTACTCGCAACTCAAAAGCGACCTCAGCGACACAAGAGAAT
CCTCACTCtcctaaaatacaaaaataatagATCGTCCTCTCTTTGCAGTA
TAGAGCTCCAACTTGTTCCATATGATGTCTCTAAATGGAGGAGCTACTCA
CATTCCATAAAAAAGGGTGTATTACAAGCAACAAGGGAATCACGGGTgag
aaaacatgaaaataaataGTGTCCCCGCAGTGAACTGCTTGatcaatcaa
aatgaattctttaaactttcaaaaacgtTGTTCGATaaagaaagattgaa
aattttgataaattcgaAAAccactaaaatttaaaaagaaaatgaaaatt
attttaataggacaaaaattaaagaatttcacCTACTTATAGCGCCTCTG
GGTGTGATGTAAAAAATTTACAGtgaatataaaaaatatcattcaatata
aaaataatGGACCTGATCTCATCAACGATTTAGTGAAATTCTCAtattct
aaataaaaaattcttttaatgatTTGGTCATAGAAATGACAAAAACCTAc
tcctaaaatgaaaatattccgAACCTTCCTATTACTATGTATAAATTccc
aaataaaagaaaaagaaaaattccaaattttataaaaatataaatattga
atGATAgccaaaaaatataatacatcataatataattttcttaaaattcc
tAATAAGATATAATACCCATAGattattgggccattccattttacgacca
tacaggggggtggacgaacatttccagggggtagtccgagaaaaatttcc
aggggtttaaagaattggttttaaatttttccagggggtaaaaagttatt
cttgaaTTTCCAAGGGGTGaaaaactgattttagttcatcgtccaccctc
actttaagacatgaaaataattttttccaagggttcttttgcaaGTTTTG
CCATTTCTAGGGAGTATCTAcacttttccaagaaatttgttttcacttga
aaaggtttgtccaACCCCtataaaatggaaattttatggaacagTCCATT
ATACCCATTGGACGAGAAGTGATGTTATAAATCTTCCTATGCAGCATTTA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020666-exon-sc0000359-1491911889:277775..279976 | TCONS_00020666-exon-sc0000359-1491911889:277775..279976 | Clytia hemisphaerica | exon |
| TCONS_00020666-exon-sc0000359-1510915933:277775..279976 | TCONS_00020666-exon-sc0000359-1510915933:277775..279976 | Clytia hemisphaerica | exon |
| TCONS_00020666-exon-sc0000359-1575043694:277775..279976 | TCONS_00020666-exon-sc0000359-1575043694:277775..279976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000359 | supercontig | sc0000359:277775..279976 . |
Blast
The following BLAST results are available for this feature:
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