TCONS_00020659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020659
Unique NameTCONS_00020659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020659 ID=TCONS_00020659|Name=TCONS_00020659|organism=Clytia hemisphaerica|type=transcript|length=273bp
aaaaaaaaactgttaaaGAGACAAAAACCTACTTTAAAGATAGGTGCTGT
TATTTTCATCTTAAAAGTTACAATAGTGCTCATTTTGAGTTGTTAAAACC
ATCTATTATCAAAGGAATGGGCCATCTCCAAATAAACGTTCATtttctgt
aaactttgcatattcaactctgtttgaCGNCTCCAAATAAACGTTCATCt
tctgtaaactttgcatattcaactctgtttgaCGTTGTTACTTTCCATCg
acatcaataaccttaaatgaaat
Run BLAST on NCBI

transcript from alignment at sc0000359:85505..85777

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020659 ID=TCONS_00020659|Name=TCONS_00020659|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0000359:85505..85777 (Clytia hemisphaerica)
atttcatttaaggttattgatgtcGATGGAAAGTAACAACGtcaaacaga
gttgaatatgcaaagtttacagaaGATGAACGTTTATTTGGAGNCGtcaa
acagagttgaatatgcaaagtttacagaaaATGAACGTTTATTTGGAGAT
GGCCCATTCCTTTGATAATAGATGGTTTTAACAACTCAAAATGAGCACTA
TTGTAACTTTTAAGATGAAAATAACAGCACCTATCTTTAAAGTAGGTTTT
TGTCTCtttaacagttttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011588XLOC_011588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020659-exon-sc0000359-1491911889:85505..85777TCONS_00020659-exon-sc0000359-1491911889:85505..85777Clytia hemisphaericaexon
TCONS_00020659-exon-sc0000359-1510915933:85505..85777TCONS_00020659-exon-sc0000359-1510915933:85505..85777Clytia hemisphaericaexon
TCONS_00020659-exon-sc0000359-1575043694:85505..85777TCONS_00020659-exon-sc0000359-1575043694:85505..85777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:85505..85777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.26369	5.75531	3.96361	0.683887	0	0.579006	0.698546	0	0	1.13427	0	0	1.44543	0	1.85115	0.662189	0	1.4884	0	1.81319	2.64024	2.30614	0	2.8319	0	0	0	0	1.20612	0.614425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top