TCONS_00020656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020656
Unique NameTCONS_00020656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020656 ID=TCONS_00020656|Name=TCONS_00020656|organism=Clytia hemisphaerica|type=transcript|length=948bp
CAACCATGCCCTTACTTGTCTTCTCCACATGCAGCTTTCTTATTTTTGGC
tcaccaaaaaataaaatataaacttGGGTCCTATTAAATCTGTTTTCACT
GAATCCATTCTTGGAGGTCCTTAATCCTTTGAGAATAAAAATTTACGATT
CAAAGTCTTCTTGGCTAAACTTTTGCCGGCTTTTACAAGAGATTTCAAAG
AAtttaattttcacatttttctctTAAAGTCATTTCAATTGGTTATTCAA
ATTATCAAAATCAGTTAATGGTTGGTTATCATCTTTCCACAGGGcttcta
ttttctgaaaaaggttCCTTTTTATTAACCGATTACTATAAAATATGATA
TGGAACAAAAATTGATCGATTCCCTCCCCTCCTAGCACACAAGGTTatta
atttatcaaaaaaaggaatCTAGCAATGCATTTGACGCGAGCCATTTTTG
GCGCAACAAGACGAGTGATGACAGGAAAGCATGGGAACAAAAACTTCTAC
AAGGGTAGAGGAGTGCGCAACCATGGATTTCCCACAAAACACGGTGGTTA
TAAAATCGTCCAGAAAAAAGTTTCTGAATTTATCGTCCCTGACTTGACTG
GTTTTGAGATGAAGCCTTATGTTTCTTATCGTGTGCCTCTTATCAAGGAG
CCTGCGATGACAGCAGAAAGATTATACCAAGAAATCAAAAGCAATATTGA
TATTATAAAACATAGGGAAGTGCCCTAATTagtgaatgttttgattttta
gagACATTTTCTATAGaagtttgtaaatattttattttatacaaAAGAAG
AAGTGCAAAACGAAGACAGTCTTATCTAGTTATTATCAATGGAATTTGGC
TTATGATTGGTGTATATATGGAAAACTATTGCATGTTTCACTCTTTACAT
tatcaaaatttgataatttttctttataatcgcacgatgggttatttt
Run BLAST on NCBI

protein sequence of TCONS_00020656-protein

>TCONS_00020656-protein ID=TCONS_00020656-protein|Name=TCONS_00020656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MHLTRAIFGATRRVMTGKHGNKNFYKGRGVRNHGFPTKHGGYKIVQKKVS
EFIVPDLTGFEMKPYVSYRVPLIKEPAMTAERLYQEIKSNIDIIKHREVP
Run BLAST on NCBI

transcript from alignment at sc0000359:294368..297714-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020656 ID=TCONS_00020656|Name=TCONS_00020656|organism=Clytia hemisphaerica|type=transcript|length=3347bp|location=Sequence derived from alignment at sc0000359:294368..297714- (Clytia hemisphaerica)
CAACCATGCCCTTACTTGTCTTCTCCACATGCAGCTTTCTTATTTTTGGC
TCACCAAAAAATAAAATATAAACTTGGGTCCTATTAAATCTGTTTTCACT
GAATCCATTCTTGGAGGTCCTTAATCCTTTGAGAATAAAAATTTACGATT
CAAAGTCTTCTTGGCTAAACTTTTGCCGGCTTTTACAAGAGATTTCAAAG
AATTTAATTTTCACATTTTTCTCTTAAAGTCATTTCAATTGGTTATTCAA
ATTATCAAAATCAGTTAATGGTTGGTTATCATCTTTCCACAGGGCTTCTA
TTTTCTGAAAAAGGTTCCTTTTTATTAACCGATTACTATAAAATATGATA
TGGAACAAAAATTGATCGATTCCCTCCCCTCCTAGCACACAAGGTTATTA
ATTTATCAAAAAAAGGAATCTAGCAATGCATTTGACGCGAGCCATTTTTG
GCGCAACAAGACGAGTGATGACAGGAAAGCATGGGAACAAAAACTTCTAC
AAGGGTGAGGAAAACTTTCACAATTTCTCACTTTTTCTGAGCCCTTTGCA
GCATCCTAGCCATTATCAACCCTGTGTTATTTATTTTTCTTGTGTCAATA
TCATCTATCTCAATACTTATTTTCAGTAAGCTTAGCAGCTTAGCTTTTTC
ATTTTATTAGATTATTAATTTTTATCTTTTTTTTATATTTTGATAATGTA
CGTATATGTATAATGTGATGAATATGTTGAATTTTAACTTGAGCTTCAAC
TAGCGTTTAGTATCAAAGATTCTATTATGTTTGTTACACTCTAAAAGTCT
TGTTTATCAACAATATCTTTTTAACGATCTAATGTTCATGGTTTTCATGA
TTTTTGCAATTTTTTGAAATCAAGGTTTCCTTTTTTGAATTTGGAAACTC
ATCTGTCCATTCTCTTCCATATCAAGGGAACTGAACGTCAAATAATGCTG
ACATGCGATAGCAAAAAAGATTACATGCTTAAAACCAATAAATGGACTTT
ACCTCCATGAATAAACTGCTGTAATATTAAAAGGAAGTGTTATCAAATGG
TGACCAAAAATTCTACAATTCCTCTATTCGGAGGTTTAATTGTTGTTTCT
GATGTTGGTTCTGTGAGGCTGTTTATTTGCTCTCATTCATCCTTACATTA
AAGATTTATTCGATTGTATTACATGTTCCTAAAATTTAACCTCCTAATAG
ATTGATGTTAAGAGGTTAGTGAGGTAAAAGCTTGTTTTCATTTTATTCTT
AGGTAGAGGAGTGCGCAACCATGGATTTCCCACAAAACACGGTTTGTATC
TGTTTATATTTTTTCCAAAAGGGGAGTAAGCCTATCCAAAAACCACAATT
TAAAAGAGGAGAGAGAAAGGAGCGTATATTATAGCATATATGGATTACAT
ACCGAGTGCGTCACAAAGAAAACTTTGAGTTCAAATTTCTCGACGCCTGT
GAAGTTTAGACAATTGAATCCTTTTGCGTTAGTTAGAAAGGAGAACAATT
AACTTGGTGTTTCCTTTATTAACTTTAGTCAAGTTAGTAAAAAGTTATAA
CCAAAAGAATAAAAAAATTAATTTCAGAAAGTGCTCAAAGTGGTCGAAAA
TTGGCCTGTTGAATTAAAAAAAGACATATTTCGGCGATCTTTATGTCATC
ATTTTCAACCGCATACTAAAAACATTTCAAATATTACAATTTATTCTAAA
AATCTGTACAGCAGGTAATAAAAATCGTAATTAAAAACATTAATGAGATT
AAATAAAGCTATGCACAAGGGAATGAAGTAATAAAATTGATATAAAAGAA
TAACGGTTGAAAAGAAACAAAAGAGTAATCAATTGTCAGGGGCCTATCCA
AATAATTGAAGCTCTTTTGAAGCTTTTAAACCGTCATTAATTTTAGGCCA
AAGTTTCTTAATATAAAATGCCTCTAAAAAAGATNGAAGCTCTTTTGAAG
CTTTTAAGCCGTCATTAATTTTAGGCCAAAGTTTCTTAATATAAAATGCC
TCTAAAAAAGATAATTGTGACCAATTATCATTCATGTCTAAAATTTTACA
CATTACAGTTATTCAATACTGCATTAATGATATGTTCTTTGTGGTTGATC
CCGTCGGAATTATCAAACAACCGAGTGAGAGCAAAAAAGTTTAAACGTCA
TGGAATTTATCACAATGTTTTAAGTGTTGATGCATGGGTTGAACTGCCCT
TCTCAAAAAGGATTGAGTTAATCTAATCTTTAAAGTAAAGAACTTGAGAA
ATTGAATTCAAAGTGTTAAACCTCGTGGTGCACCCAGTGTGTGAACCCCC
CCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACCCCCGGAACCATG
TAAGATATCACATTCACTAATCCCTAATGGTGAAAAATTTTGATATAGTT
TTACATTCATTTTATTCTTTGCCACGGAAAGTCATGTGATATGCCTTTTA
ACCAATAAGATTTGATTATTGCGAGGGGAAAACAAACACTATGGTTTAAC
TCACTAAAAGATTTTGTTTAATGAATACACATAATTATCTTTAGTAAGTG
TTCTGTTTTCCCCAATTTTGACGTCATGCCGTGGCAAAGAATAGTTTATT
CAATGTAAATATTAAGATATTGATCGTTCAATCAGTGGAATTTTAATAAA
ACTTAGGCATAATTTTACTGAAGTTATTTTGTTTTTATTTTTTTCAACCC
AGGTGGTTATAAAATCGTCCAGAAAAAAGTTTCTGAATTTATCGTCCCTG
ACTTGACTGGTTTTGAGGTAACAATCAATAAATTTTGAAAATGATTAAAT
GGATATTGATTATTTTTTGAAAAACATCAATGATAAACAAATTGTGCTGA
CAGTATTACAATTTCAAAATTTCAATTCAAATCTATTTTTATATGTTCAA
CTTTTAGATGAAGCCTTATGTTTCTTATCGTGTGCCTCTTATCAAGGAGC
CTGCGATGACAGCAGAAAGATTATACCAAGAAATCAAAAGCAATATTGAT
ATTATAAAACATAGGGAAGTGCCCTAATTAGTGAATGTTTTGATTTTTAG
AGACATTTTCTATAGAAGTTTGTAAATATTTTATTTTATACAAAAGAAGA
AGTGCAAAACGAAGACAGTCTTATCTAGTTATTATCAATGGAATTTGGCT
TATGATTGGTGTATATATGGAAAACTATTGCATGTTTCACTCTTTACATT
ATCAAAATTTGATAATTTTTCTTTATAATCGCACGATGGGTTATTTT

Coding sequence (CDS) from alignment at sc0000359:294368..297714-

>TCONS_00020656 ID=TCONS_00020656|Name=TCONS_00020656|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000359:294368..297714- (Clytia hemisphaerica)
ATGAAGCCTTATGTTTCTTATCGTGTGCCTCTTATCAAGGAGCCTGCGAT
GACAGCAGAAAGATTATACCAAGAAATCAAAAGCAATATTGATATTATAA
AACATAGGGAAGTGCCCTAAGTGGTTATAAAATCGTCCAGAAAAAAGTTT
CTGAATTTATCGTCCCTGACTTGACTGGTTTTGAGGTAGAGGAGTGCGCA
ACCATGGATTTCCCACAAAACACGATGCATTTGACGCGAGCCATTTTTGG
CGCAACAAGACGAGTGATGACAGGAAAGCATGGGAACAAAAACTTCTACA
AGGATGAAGCCTTATGTTTCTTATCGTGTGCCTCTTATCAAGGAGCCTGC
GATGACAGCAGAAAGATTATACCAAGAAATCAAAAGCAATATTGATATTA
TAAAACATAGGGAAGTGCCCTAAGTGGTTATAAAATCGTCCAGAAAAAAG
TTTCTGAATTTATCGTCCCTGACTTGACTGGTTTTGAGGTAGAGGAGTGC
GCAACCATGGATTTCCCACAAAACACGATGCATTTGACGCGAGCCATTTT
TGGCGCAACAAGACGAGTGATGACAGGAAAGCATGGGAACAAAAACTTCT
ACAAGGATGAAGCCTTATGTTTCTTATCGTGTGCCTCTTATCAAGGAGCC
TGCGATGACAGCAGAAAGATTATACCAAGAAATCAAAAGCAATATTGATA
TTATAAAACATAGGGAAGTGCCCTAAGTGGTTATAAAATCGTCCAGAAAA
AAGTTTCTGAATTTATCGTCCCTGACTTGACTGGTTTTGAGGTAGAGGAG
TGCGCAACCATGGATTTCCCACAAAACACGATGCATTTGACGCGAGCCAT
TTTTGGCGCAACAAGACGAGTGATGACAGGAAAGCATGGGAACAAAAACT
TCTACAAGGATGAAGCCTTATGTTTCTTATCGTGTGCCTCTTATCAAGGA
GCCTGCGATGACAGCAGAAAGATTATACCAAGAAATCAAAAGCAATATTG
ATATTATAAAACATAGGGAAGTGCCCTAAGTGGTTATAAAATCGTCCAGA
AAAAAGTTTCTGAATTTATCGTCCCTGACTTGACTGGTTTTGAGGTAGAG
GAGTGCGCAACCATGGATTTCCCACAAAACACGATGCATTTGACGCGAGC
CATTTTTGGCGCAACAAGACGAGTGATGACAGGAAAGCATGGGAACAAAA
ACTTCTACAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011585XLOC_011585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020656-exon-sc0000359-1575043694:297211..297714TCONS_00020656-exon-sc0000359-1575043694:297211..297714Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1575043694:296424..296462TCONS_00020656-exon-sc0000359-1575043694:296424..296462Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1575043694:294848..294912TCONS_00020656-exon-sc0000359-1575043694:294848..294912Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1575043694:294368..294707TCONS_00020656-exon-sc0000359-1575043694:294368..294707Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1510915933:297211..297714TCONS_00020656-exon-sc0000359-1510915933:297211..297714Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1510915933:296424..296462TCONS_00020656-exon-sc0000359-1510915933:296424..296462Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1510915933:294848..294912TCONS_00020656-exon-sc0000359-1510915933:294848..294912Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1510915933:294368..294707TCONS_00020656-exon-sc0000359-1510915933:294368..294707Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1491911889:297211..297714TCONS_00020656-exon-sc0000359-1491911889:297211..297714Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1491911889:296424..296462TCONS_00020656-exon-sc0000359-1491911889:296424..296462Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1491911889:294848..294912TCONS_00020656-exon-sc0000359-1491911889:294848..294912Clytia hemisphaericaexon
TCONS_00020656-exon-sc0000359-1491911889:294368..294707TCONS_00020656-exon-sc0000359-1491911889:294368..294707Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020656-proteinTCONS_00020656-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:294368..297714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.6007	11.6264	26.8491	29.3493	15.0895	13.7612	17.8293	17.0219	18.8389	14.0565	12.607	15.8336	15.2618	15.6048	19.2186	17.7707	34.886	33.6544	9.9515	10.331	15.0856	14.5851	22.8947	22.0732	24.8628	26.588	15.0271	10.7368	12.6556	12.603
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019189Ribosomal_L27/L41_mit
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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