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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020655 ID=TCONS_00020655|Name=TCONS_00020655|organism=Clytia hemisphaerica|type=transcript|length=566bp
CTTTTTATTAACCGATTACTATAAAATATGATATGGAACAAAAATTGATC
GATTCCCTCCCCTCCTAGCACACAAGGTTattaatttatcaaaaaaagga
atCTAGCAATGCATTTGACGCGAGCCATTTTTGGCGCAACAAGACGAGTG
ATGACAGGAAAGCATGGGAACAAAAACTTCTACAAGGGTAGAGGAGTGCG
CAACCATGGATTTCCCACAAAACACGATGAAGCCTTATGTTTCTTATCGT
GTGCCTCTTATCAAGGAGCCTGCGATGACAGCAGAAAGATTATACCAAGA
AATCAAAAGCAATATTGATATTATAAAACATAGGGAAGTGCCCTAATTag
tgaatgttttgatttttagagACATTTTCTATAGaagtttgtaaatattt
tattttatacaaAAGAAGAAGTGCAAAACGAAGACAGTCTTATCTAGTTA
TTATCAATGGAATTTGGCTTATGATTGGTGTATATATGGAAAACTATTGC
ATGTTTCACTCTTTACATtatcaaaatttgataatttttctttataatcg
cacgatgggttatttt Run BLAST on NCBI transcript from alignment at sc0000359:294368..297397- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020655 ID=TCONS_00020655|Name=TCONS_00020655|organism=Clytia hemisphaerica|type=transcript|length=3030bp|location=Sequence derived from alignment at sc0000359:294368..297397- (Clytia hemisphaerica)
CTTTTTATTAACCGATTACTATAAAATATGATATGGAACAAAAATTGATC
GATTCCCTCCCCTCCTAGCACACAAGGTTATTAATTTATCAAAAAAAGGA
ATCTAGCAATGCATTTGACGCGAGCCATTTTTGGCGCAACAAGACGAGTG
ATGACAGGAAAGCATGGGAACAAAAACTTCTACAAGGGTGAGGAAAACTT
TCACAATTTCTCACTTTTTCTGAGCCCTTTGCAGCATCCTAGCCATTATC
AACCCTGTGTTATTTATTTTTCTTGTGTCAATATCATCTATCTCAATACT
TATTTTCAGTAAGCTTAGCAGCTTAGCTTTTTCATTTTATTAGATTATTA
ATTTTTATCTTTTTTTTATATTTTGATAATGTACGTATATGTATAATGTG
ATGAATATGTTGAATTTTAACTTGAGCTTCAACTAGCGTTTAGTATCAAA
GATTCTATTATGTTTGTTACACTCTAAAAGTCTTGTTTATCAACAATATC
TTTTTAACGATCTAATGTTCATGGTTTTCATGATTTTTGCAATTTTTTGA
AATCAAGGTTTCCTTTTTTGAATTTGGAAACTCATCTGTCCATTCTCTTC
CATATCAAGGGAACTGAACGTCAAATAATGCTGACATGCGATAGCAAAAA
AGATTACATGCTTAAAACCAATAAATGGACTTTACCTCCATGAATAAACT
GCTGTAATATTAAAAGGAAGTGTTATCAAATGGTGACCAAAAATTCTACA
ATTCCTCTATTCGGAGGTTTAATTGTTGTTTCTGATGTTGGTTCTGTGAG
GCTGTTTATTTGCTCTCATTCATCCTTACATTAAAGATTTATTCGATTGT
ATTACATGTTCCTAAAATTTAACCTCCTAATAGATTGATGTTAAGAGGTT
AGTGAGGTAAAAGCTTGTTTTCATTTTATTCTTAGGTAGAGGAGTGCGCA
ACCATGGATTTCCCACAAAACACGGTTTGTATCTGTTTATATTTTTTCCA
AAAGGGGAGTAAGCCTATCCAAAAACCACAATTTAAAAGAGGAGAGAGAA
AGGAGCGTATATTATAGCATATATGGATTACATACCGAGTGCGTCACAAA
GAAAACTTTGAGTTCAAATTTCTCGACGCCTGTGAAGTTTAGACAATTGA
ATCCTTTTGCGTTAGTTAGAAAGGAGAACAATTAACTTGGTGTTTCCTTT
ATTAACTTTAGTCAAGTTAGTAAAAAGTTATAACCAAAAGAATAAAAAAA
TTAATTTCAGAAAGTGCTCAAAGTGGTCGAAAATTGGCCTGTTGAATTAA
AAAAAGACATATTTCGGCGATCTTTATGTCATCATTTTCAACCGCATACT
AAAAACATTTCAAATATTACAATTTATTCTAAAAATCTGTACAGCAGGTA
ATAAAAATCGTAATTAAAAACATTAATGAGATTAAATAAAGCTATGCACA
AGGGAATGAAGTAATAAAATTGATATAAAAGAATAACGGTTGAAAAGAAA
CAAAAGAGTAATCAATTGTCAGGGGCCTATCCAAATAATTGAAGCTCTTT
TGAAGCTTTTAAACCGTCATTAATTTTAGGCCAAAGTTTCTTAATATAAA
ATGCCTCTAAAAAAGATNGAAGCTCTTTTGAAGCTTTTAAGCCGTCATTA
ATTTTAGGCCAAAGTTTCTTAATATAAAATGCCTCTAAAAAAGATAATTG
TGACCAATTATCATTCATGTCTAAAATTTTACACATTACAGTTATTCAAT
ACTGCATTAATGATATGTTCTTTGTGGTTGATCCCGTCGGAATTATCAAA
CAACCGAGTGAGAGCAAAAAAGTTTAAACGTCATGGAATTTATCACAATG
TTTTAAGTGTTGATGCATGGGTTGAACTGCCCTTCTCAAAAAGGATTGAG
TTAATCTAATCTTTAAAGTAAAGAACTTGAGAAATTGAATTCAAAGTGTT
AAACCTCGTGGTGCACCCAGTGTGTGAACCCCCCCCCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCACCCCCGGAACCATGTAAGATATCACATTCAC
TAATCCCTAATGGTGAAAAATTTTGATATAGTTTTACATTCATTTTATTC
TTTGCCACGGAAAGTCATGTGATATGCCTTTTAACCAATAAGATTTGATT
ATTGCGAGGGGAAAACAAACACTATGGTTTAACTCACTAAAAGATTTTGT
TTAATGAATACACATAATTATCTTTAGTAAGTGTTCTGTTTTCCCCAATT
TTGACGTCATGCCGTGGCAAAGAATAGTTTATTCAATGTAAATATTAAGA
TATTGATCGTTCAATCAGTGGAATTTTAATAAAACTTAGGCATAATTTTA
CTGAAGTTATTTTGTTTTTATTTTTTTCAACCCAGGTGGTTATAAAATCG
TCCAGAAAAAAGTTTCTGAATTTATCGTCCCTGACTTGACTGGTTTTGAG
GTAACAATCAATAAATTTTGAAAATGATTAAATGGATATTGATTATTTTT
TGAAAAACATCAATGATAAACAAATTGTGCTGACAGTATTACAATTTCAA
AATTTCAATTCAAATCTATTTTTATATGTTCAACTTTTAGATGAAGCCTT
ATGTTTCTTATCGTGTGCCTCTTATCAAGGAGCCTGCGATGACAGCAGAA
AGATTATACCAAGAAATCAAAAGCAATATTGATATTATAAAACATAGGGA
AGTGCCCTAATTAGTGAATGTTTTGATTTTTAGAGACATTTTCTATAGAA
GTTTGTAAATATTTTATTTTATACAAAAGAAGAAGTGCAAAACGAAGACA
GTCTTATCTAGTTATTATCAATGGAATTTGGCTTATGATTGGTGTATATA
TGGAAAACTATTGCATGTTTCACTCTTTACATTATCAAAATTTGATAATT
TTTCTTTATAATCGCACGATGGGTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020655-exon-sc0000359-1575043694:297211..297397 | TCONS_00020655-exon-sc0000359-1575043694:297211..297397 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1575043694:296424..296462 | TCONS_00020655-exon-sc0000359-1575043694:296424..296462 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1575043694:294368..294707 | TCONS_00020655-exon-sc0000359-1575043694:294368..294707 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1510915933:297211..297397 | TCONS_00020655-exon-sc0000359-1510915933:297211..297397 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1510915933:296424..296462 | TCONS_00020655-exon-sc0000359-1510915933:296424..296462 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1510915933:294368..294707 | TCONS_00020655-exon-sc0000359-1510915933:294368..294707 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1491911889:297211..297397 | TCONS_00020655-exon-sc0000359-1491911889:297211..297397 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1491911889:296424..296462 | TCONS_00020655-exon-sc0000359-1491911889:296424..296462 | Clytia hemisphaerica | exon |
| TCONS_00020655-exon-sc0000359-1491911889:294368..294707 | TCONS_00020655-exon-sc0000359-1491911889:294368..294707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000359 | supercontig | sc0000359:294368..297397 - |
Blast
The following BLAST results are available for this feature:
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