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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020639 ID=TCONS_00020639|Name=TCONS_00020639|organism=Clytia hemisphaerica|type=transcript|length=3268bp
aaagacggctcgccatacaaatcggacggtttctacatgatttgacgata
aaaatgaaaatttgtttttccttttttgccgattactagttcagttttta
agaataaggagcaatatttttactaatgtatagcaaaagaaaatcttaac
gcaatgatattaaattggttcttgtaaaactgtcagaagtcgagtaaagt
caatatgaagttataattttctcgcgctctagctttccatacaATGATGC
GGTCATAATGCGGTTATATCAATAGAATcactaggaaattctgagcaaga
agatataggtaccttttcgtataggagaggtgtacccaaaatataagccc
taaaagtttgcacATAATCAGNNNNNNNNNNNNNNtaattatgcagattt
tttatagcgacaacaaaagaaacctatttactcgacataaactcccttaa
gggcaagagacctggtatatgacgagccgtttttccattgttttcaagaa
gctgtttttccatctctttacattcctctgaaaATACTAACAAAACAGGA
GGGGCCGACCATATtatttttagctttcattttttttagatACTTTGGTG
ATCGTTCCCAAACAAAATGTCAGATAAAACCTCAGgtaaacaaattgtAG
AAAAAGAAGATAACCAAACAGAAAGCGAGAATGCATTCAAAACCTACAAG
GAGATTACTAAAATCATTTCCGATGACCTTGGAGTTCGTGATGCTGAAGC
AATAACAGAAACAGACTTAAATAaacttgtcaaaatttcaaacgtACCAT
TGACGAAAGATGATATCAAACTTTTTATCACGGTCAAAGAGAACaacaaa
aagtacaaaatgCTGGCCGTTCCTGACCTACCAGAGGGGAAAACACTGTC
ACCACCAGATCTACAAAAAATCGAATCGCTTAAACTAGATAAACAATTGG
AAGTCTTCAAAGGTCCAATTGACAACAAAGCTCAAGCACCGATCGATTTC
TCAACGATGACAGCGGCTGATTGGGTGAAGGTTATTCTCAACTGCAACAT
GACGTATGGTCGTGTTTTTCGTAAACTTGGCAGTCCAAACGACCGCGGAG
CGCAACCTATGTTTTTCCCCCCTAACGAAATGCTTTTTGGAACTTCTGAT
TTTAATGTTTCACAAGTAGCCTTATTTTTCTCACAGACTTCTGAGAAAGT
CGAAAATTTCAGCGACAAGTCTGTCATGACAAATCTATCCGTCGGGGCTT
CAATTTCGACGCCTTGGGTAGCTGGCAGTGCTGAGTTTTCCCACGAAACA
AAAAATAGAACTGCCGAAAAGGGTTCCAACATCAAATCTGTCTTCAAAGT
CGAAGTTCCAATCGGCATATTTACCTTACCACGGCCTTCAGAGCTGAAAA
ATTCGAAGATCAAGTTGAACGATGACTTTAAATCATTTGTTAACAAGTAT
CTAGAAGATCATCCTGACTGCACTagggaaaaaattcaagaagcgATGAC
TGAACGTTTCGGAGACGTTGTACCACAGAGTGTTAAGATTGGCGTAGCAT
GTTACACGACCGATATAACCAAATTGGAGGAGAGTCAATCATTAGAAGCC
GTTTCTAATTCGTTTGCAGCGAGCGTGAAAGGGGCGTATGGGTGTTTCAG
TGGTGGCGGCCATGCTGGTTATGGCCAAGGCTCGTCCAATAAAGAAGGAA
ATTCTTCCCAAGACAAAACCTTTACATTTTCTGCAATCGCTGGTAGCCTT
CCAGATCCTAACAACCCAATGTCGGTGGCTGATTACCGTGTTTTACCGAT
CAGTTGGAGAATCATTGATTTTGGAGATGAATTTACGCCAGTGTATGACT
ATCTGGATGAAGATGTCAAGGACCACTTGAATAAAATTCAATCGTCAACA
ACGTCGGTGAATACAGACAAAACCCATCTCTATCCTGGTCAAAGTTTGGA
CAGAGGTGATCAATTGATTACATCTGGATTTCGATTGATAATGCAACATG
ATGGAGATCTGGCTTTGTATTGTGGACCATACTCAAACTTGCTTTGGAAC
ACGGACACAGCAAAAAGCAAAGCCTGTAGACTCATATGCGAAGGAAGTGG
CAATTTAGCACTGGTTGATAACGATGGTAGGACCCACTGGGCTTCAAACA
CAGCTGGTAAAGGCATTCAAAGATTCGTACTGAAGGATAACGGGAACTTT
GTCGGATATAAAGGAGAAGAGATAATTTGGCAGACAGAGACAGCCAACAA
GTTCAGCATAGACGGGACATCGATGTTCAAAGGAGCAACGTTGAGAAAAG
GAAACAAGCTGGTTTCAAGCAGTGGAAAAGAAGAACTACGTTTGAGAATG
GATGGGAACTTAGAATGGTGTGGTCAAAATGGTGGACACCAACTATTATC
GTTCAGTAGTAAGAGCAACACTCAAGAATTGCATTTCGATGGAAGAGCTC
TCTGCGCAATTTCACGTCAAACCAAATTAGTTGCAACACGTATGGTTTGG
AGCATTAGAATAAGCCTTCAGTCATTGGCCAGATTTACTTTGATAGACGG
GCAGGCATTGAAAGGATATGATAGGGATGGGAAGCTTATCGTTGTTGAAA
GCANTGAAATAAAAGAGATGAAGCATTCttcagaaaaagtaataaaattg
ttttaataACGAACAAACAAATCAAATGAGAGCTTTTAATAACTTGCCCC
TTTTAATGACGTTTTCGAACCCACAAATACACTGAGAGAGTCTTAAAGTA
CGTTAAGACTGAATCACTGACAATAAAAGTACTCACCCGTTGTTGACACG
TAATCGAGGAGCACAAGTAGCAGTCACCAAGTGTTGACCATCCGGACACC
ATTGGAAAAACGTTGTATCAGAAGCCTGAGTGAAAGAAAAGAAGTTTTTA
AagtcaactctctctctctTCCGAACCtcttttattcgaatctttctgta
attcgaactagaaCATTGGTCCCTTCAGCTGAGGAGTGGTATaattctct
gtaattcgaaactcTTCAACtcaaagaaaatcttttgtcccttgaagatc
ggaTAGGAGGGAGTCAACCGTAGAGGCTTTTTATAAACCGTTTATCATAT
TTTGTAGAGGCTTTTTATAGATTCCCGAATCATAATCATTtaacttttaa
ttttcaactttcatttATTATACGATCGAATGTAAATAATAACactaaat
gtttttatttaaacaCGTACGCACTTTTGTTAGTATTTATCAAAATTGAT
CAAATATATACTTCTTTG Run BLAST on NCBI transcript from alignment at sc0000359:26611..30918- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020639 ID=TCONS_00020639|Name=TCONS_00020639|organism=Clytia hemisphaerica|type=transcript|length=4308bp|location=Sequence derived from alignment at sc0000359:26611..30918- (Clytia hemisphaerica)
AAAGACGGCTCGCCATACAAATCGGACGGTTTCTACATGATTTGACGATA
AAAATGAAAATTTGTTTTTCCTTTTTTGCCGATTACTAGTTCAGTTTTTA
AGAATAAGGAGCAATATTTTTACTAATGTATAGCAAAAGAAAATCTTAAC
GCAATGATATTAAATTGGTTCTTGTAAAACTGTCAGAAGTCGAGTAAAGT
CAATATGAAGTTATAATTTTCTCGCGCTCTAGCTTTCCATACAATGATGC
GGTCATAATGCGGTTATATCAATAGAATCACTAGGAAATTCTGAGCAAGA
AGATATAGGTACCTTTTCGTATAGGAGAGGTGTACCCAAAATATAAGCCC
TAAAAGTTTGCACATAATCAGNNNNNNNNNNNNNNTAATTATGCAGATTT
TTTATAGCGACAACAAAAGAAACCTATTTACTCGACATAAACTCCCTTAA
GGGCAAGAGACCTGGTATATGACGAGCCGTTTTTCCATTGTTTTCAAGAA
GCTGTTTTTCCATCTCTTTACATTCCTCTGAAAATACTAACAAAACAGGA
GGGGCCGACCATATTATTTTTAGCTTTCATTTTTTTTAGATACTTTGGTG
ATCGTTCCCAAACAAAATGTCAGATAAAACCTCAGGTAAGCTACATCTTT
AAATAAGAAACTAACCAAATGAAAAACGTTCAGTGTCCGTTCGGACGTTT
TTAAGGAATTTCTGAAAAAAAGAAGCTTTTTCAGGCCCTGCTGGCTGAGA
AATGAGCCTTTAAAAAGAGTCAAAAATATTTTGACTTTGTCAAGTCCTTT
GCGTGCAATGAATCAATTAATCCAAGCTAAATTAATAAGTTAAAGAGTTA
CTAATTTGCGCATGATCAAAGAACACAAATAATCGATACATTCGAATTAT
GAACGGTGCATCCGTTGTTCCTTAATACCTTTTTATTATAATCTTTAAAG
GTAAACAAATTGTAGAAAAAGAAGATAACCAAACAGAAAGCGAGAATGCA
TTCAAAACCTACAAGGAGATTACTAAAATCATTTCCGATGACCTTGGAGT
TCGTGATGCTGAAGCAATAACAGAAACAGACTTAAATAAACTTGTCAAAA
TTTCAAACGTACCATTGACGAAAGATGATATCAAACTTTTTATCACGGTC
AAAGAGAACAACAAAAAGTACAAAATGCTGGCCGTTCCTGACCTACCAGA
GGGGAAAACACTGTCACCACCAGATCTACAAAAAATCGAATCGCTTAAAC
TAGATAAACAATTGGAAGTCTTCAAAGGTCCAATTGACAACAAAGCTCAA
GCACCGATCGATTTCTCAACGATGACAGCGGCTGATTGGGTGAAGGTTAT
TCTCAACTGCAACATGACGTATGGTCGTGTTTTTCGTAAACTTGGCAGTC
CAAACGACCGCGGAGCGCAACCTATGTTTTTCCCCCCTAACGAAATGCTT
TTTGGAACTTCTGATTTTAATGTTTCACAAGTAGCCTTATTTTTCTCACA
GACTTCTGAGAAAGTCGAAAATTTCAGCGACAAGTCTGTCATGACAAATC
TATCCGTCGGGGCTTCAATTTCGACGCCTTGGGTAGCTGGCAGTGCTGAG
TTTTCCCACGAAACAAAAAATAGAACTGCCGAAAAGGGTTCCAACATCAA
ATCTGTCTTCAAAGTCGAAGTTCCAATCGGCATATTTACCTTACCACGGC
CTTCAGAGCTGAAAAATTCGAAGATCAAGTTGAACGATGACTTTAAATCA
TTTGTTAACAAGTATCTAGAAGATCATCCTGACTGCACTAGGGAAAAAAT
TCAAGAAGCGATGACTGAACGTTTCGGAGACGTTGTACCACAGAGTGTTA
AGATTGGCGTAGCATGTTACACGACCGATATAACCAAATTGGAGGAGAGT
CAATCATTAGAAGCCGTTTCTAATTCGTTTGCAGCGAGCGTGAAAGGGGC
GTATGGGTGTTTCAGTGGTGGCGGCCATGCTGGTTATGGCCAAGGCTCGT
CCAATAAAGAAGGAAATTCTTCCCAAGACAAAACCTTTACATTTTCTGCA
ATCGCTGGTAGCCTTCCAGATCCTAACAACCCAATGTCGGTGGCTGATTA
CCGTGTTTTACCGATCAGTTGGAGAATCATTGATTTTGGAGATGAATTTA
CGCCAGTGTATGACTATCTGGATGAAGATGTCAAGGACCACTTGAATAAA
AGTAAGAAAGTTTCTTTTCCAATCTCCCTGTTAATTTTTTATAAACAACC
AAAAACTGTTCGCTAAAAAAAAGCCTTTTCTCCACCAGGTGTTTAAACAA
ATCAAAGGCGCCCTTCAGATGTGTCCTTTAGAATCTGGAAAAAGCATTCT
ACTGTAGATATTTCTCTCCCATTCAGTTCAATCGTCAACAACGTCGGTGA
ATACAGACAAAACCCATCTCTATCCTGGTCAAAGTTTGGACAGAGGTGAT
CAATTGATTACATCTGGATTTCGATTGATAATGCAACATGATGGAGATCT
GGCTTTGTATTGTGGACCATACTCAAACTTGCTTTGGAACACGGACACAG
CAAAAAGCAAAGCCTGTAGACTCATATGCGAAGGAAGTGGCAATTTAGCA
CTGGTTGATAACGATGGTAGGACCCACTGGGCTTCAAACACAGCTGGTAA
AGGCATTCAAAGATTCGTACTGAAGGATAACGGGAACTTTGTCGGATATA
AAGGAGAAGAGATAATTTGGCAGACAGAGACAGCCAACAAGTGTAAGTAA
TATCACTTTGATTGGACGTTGAATATAAAAGTGTGAATCTCATGGTCATG
AAATATTGTAAATACTGACTATATTCTGTTCTATGTCTCAATTTAAGGAT
TTCATAACTAACGCTATACTAACTGTTTATGAGGGCAATTTCTGTACAAT
AATGACCAATGTTAAAAAGTATTGTCCCGAGCTTGCGTGTTTGTCCCCGT
TAGAATTACCGCGGGATACCAAGTTGAATCGAGCGTCATAACACCAGAAC
TAAACAAGTTTATGTTAATATCTGATGATATCTAGCGAGTACCTCACCCA
AAAGCCAGAATTTTTCAGTTTCTTGGTGAGTTACACATTGATAATTTTCG
AAAAATTGAAGACTTTCAAGTGTTCTTACGCAAATTCGATTGTCTCTTAC
TACAAGAGCTTCCTAAGTTTAAAGTGACATAAAAAATCGAATGTTTACAG
CCCGAAAACACGGGCTCCAAACATTCAAAAAGGTCGCAGTAGTATATCCC
TATTGCTAATGGGAAGCTTATGGCGTTTGTTATTTCGTTTAGTCAGCATA
GACGGGACATCGATGTTCAAAGGAGCAACGTTGAGAAAAGGAAACAAGCT
GGTTTCAAGCAGTGGAAAAGAAGAACTACGTTTGAGAATGGATGGGAACT
TAGAATGGTGTGGTCAAAATGGTGGACACCAACTATTATCGTTCAGTAGT
AAGAGCAACACTCAAGAATTGCATTTCGATGGAAGAGCTCTCTGCGCAAT
TTCACGTCAAACCAAATTAGTTGCAACACGTATGGTTTGGAGCATTAGAA
TAAGCCTTCAGTCATTGGCCAGATTTACTTTGATAGACGGGCAGGCATTG
AAAGGATATGATAGGGATGGGAAGCTTATCGTTGTTGAAAGCANTGAAAT
AAAAGAGATGAAGCATTCTTCAGAAAAAGTAATAAAATTGTTTTAATAAC
GAACAAACAAATCAAATGAGAGCTTTTAATAACTTGCCCCTTTTAATGAC
GTTTTCGAACCCACAAATACACTGAGAGAGTCTTAAAGTACGTTAAGACT
GAATCACTGACAATAAAAGTACTCACCCGTTGTTGACACGTAATCGAGGA
GCACAAGTAGCAGTCACCAAGTGTTGACCATCCGGACACCATTGGAAAAA
CGTTGTATCAGAAGCCTGAGTGAAAGAAAAGAAGTTTTTAAAGTCAACTC
TCTCTCTCTTCCGAACCTCTTTTATTCGAATCTTTCTGTAATTCGAACTA
GAACATTGGTCCCTTCAGCTGAGGAGTGGTATAATTCTCTGTAATTCGAA
ACTCTTCAACTCAAAGAAAATCTTTTGTCCCTTGAAGATCGGATAGGAGG
GAGTCAACCGTAGAGGCTTTTTATAAACCGTTTATCATATTTTGTAGAGG
CTTTTTATAGATTCCCGAATCATAATCATTTAACTTTTAATTTTCAACTT
TCATTTATTATACGATCGAATGTAAATAATAACACTAAATGTTTTTATTT
AAACACGTACGCACTTTTGTTAGTATTTATCAAAATTGATCAAATATATA
CTTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020639-exon-sc0000359-1575043694:30284..30918 | TCONS_00020639-exon-sc0000359-1575043694:30284..30918 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1575043694:28718..29968 | TCONS_00020639-exon-sc0000359-1575043694:28718..29968 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1575043694:28177..28542 | TCONS_00020639-exon-sc0000359-1575043694:28177..28542 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1575043694:26611..27626 | TCONS_00020639-exon-sc0000359-1575043694:26611..27626 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1510915933:30284..30918 | TCONS_00020639-exon-sc0000359-1510915933:30284..30918 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1510915933:28718..29968 | TCONS_00020639-exon-sc0000359-1510915933:28718..29968 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1510915933:28177..28542 | TCONS_00020639-exon-sc0000359-1510915933:28177..28542 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1510915933:26611..27626 | TCONS_00020639-exon-sc0000359-1510915933:26611..27626 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1491911889:30284..30918 | TCONS_00020639-exon-sc0000359-1491911889:30284..30918 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1491911889:28718..29968 | TCONS_00020639-exon-sc0000359-1491911889:28718..29968 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1491911889:28177..28542 | TCONS_00020639-exon-sc0000359-1491911889:28177..28542 | Clytia hemisphaerica | exon |
| TCONS_00020639-exon-sc0000359-1491911889:26611..27626 | TCONS_00020639-exon-sc0000359-1491911889:26611..27626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000359 | supercontig | sc0000359:26611..30918 - |
Blast
The following BLAST results are available for this feature:
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