TCONS_00020605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020605
Unique NameTCONS_00020605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020605 ID=TCONS_00020605|Name=TCONS_00020605|organism=Clytia hemisphaerica|type=transcript|length=2065bp
GTTGATATCAAGGCTATGGATTATGTTGACCTTGATCCGATGTCACCGGA
CGAATTGAAGCAAGTGTGTAAGAAATACCGACAGAAGAAGACTGGTGAAG
GTGGTGGAGGAGCAATTGATGGAGATCCTATCAACTATGAACTCGATGAG
ACGGGCGATGAAGTGAACGAAGATGATCTAGTCTCCACAAATGGATCAAC
TGAACAGCTTAATAAATTGGATCCTGATGAGGGTGCATCAGACATCAACA
ATCACAGTAGCGGTGCAAATTCATACAATGTCAGCACGCATGCGTCAGAT
GTTGCAGCAGATTTGCCTTCAGAAGATGCCGAGCGGCACCCCGTTATACC
AACAGAACAGACGAACGGTGAAACAGGTGCGGAAGAAACGCTCATCGGAA
CCATCCCTTCACCTACGGAACCATCCTTTGAAGCAACGGAAGATGGCCGA
CACTCACCCAAAAAGACGTCGTCCGTCAGTAATTTCTTAAACGGCAATAT
GGGGCAGGATGAGGCGCGAGAGAAAATCAAGAACGCCTTCAAACATGGCA
TACCAAACTTGGGAACACGCTCTTTGAGCAAAGCGTCCGATTTGTTCCGT
AAAAAGAAGAAAGGTAAAAACCGGTCGCATCGCCATCAACATTCCGTCCA
CTTGACTGTTCCAAATGATGGTGGGGAAACAACCACCGACTTTGAGGAAG
GAGATTCAGACGCTTCCACAGACAACCGACTGGATGAAGACATACTTTGC
CCATGTCACGATTCACACACAGGGACGGAATACACGAACGAGGAGTTCGA
CATGGACGTGGACACACTTTATACTCATTTATTTGCACAAGATTCTGAAC
TCATGAAGCGTGTCTTCGAAGAGAGAAAACATGAAAATTGGAGGTACACG
GCACTTGAAGACGCAGGGGATCATCAGACACAAACATTAACATACACACT
TAACCTCAACTATAGTATCGGCCCCAAAACGTCGGAAACCGTCTCTAAGA
TGGTGTTTCCAAAAGACAACAAACCAGGATCCTATTACGTCATCACAACA
GAAAACCGCAGTTACGGTGTCCCGTATTCCGACAGTTTCCACGCATCTGT
CCGTTATTGCATCACGCGGGCCGTCGGTAATCGTTCACGGCTAAAggtTC
ACGGTGACATCGTATATACGAAGAGAGTTTTCGGTCTCGTCAAAAACATG
ATTTCACGCAATGGGGACGAAGCTATGAGAAGCTATTATGTTTATCTTGC
TGAAGTTCTAAAAACCGAATCGGAATCGACGCCCATCGCAACAAATCCAA
TCGGAATCGACCGACAGAAGCGCAAAtcgaaaaagaaagttttgacgAAG
AAAGTTTCGAAAGAACCTGGCAAAAATATCGAATCGCAACGAAAGTCATC
TTTACATACACCCAAACCGCCCATTCCCGCCTCTCAacaagaaaataata
acatattCACACAAAGCGCTCTTTCATCCACGGCACTCATCACGCTTAGT
GTTATtATCTTCTTATTGCTTGGGACGAACCTTTACATTTTACGACGATT
GGGATCCTTAGAGGGAAACATGGTCGTCAGAAGCAGGGGCTGGACCCCAA
AATGTGACACTGTTGCATGCACCTCTGAAAAAGATTCTTGTGTCCTGGTT
TACTCGAATGGTGATGATGATAAAAAAGTATTCGTACCCTACACCCATGA
CTATTGAACTGGTATCTGACTTGAATCTTTGTAGTGTCAGTGTGTTTTTA
AATGTCGAATCTTCAACACTTTACCTATCACCGTGGATTCATGACTGTTG
GTTTGAATCTGAAGCTGAAGTCGACCGACGGGACAAACAAGACCTTGCGT
TTGATCTCGATCCTCTTGAAAGACCACTCAAACGGGACTGGTGGCTGACA
TTCCTGGAATGCATATCCTTTCTTTGACATTGTGGAAAGGATTGGGAGAC
AACGTCAGAGACTTTGcaagatttttgatatttcagATCCGGGCATGAAG
ATATGGTCTGATTAATATGGATTGATATTTTAGATCCTTGTATCTACCGC
TTTTTCGTTTCCTTG
Run BLAST on NCBI

transcript from alignment at sc0000359:136304..147229+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020605 ID=TCONS_00020605|Name=TCONS_00020605|organism=Clytia hemisphaerica|type=transcript|length=10926bp|location=Sequence derived from alignment at sc0000359:136304..147229+ (Clytia hemisphaerica)
GTTGATATCAAGGCTATGGATTATGTTGACCTTGATGTGAGTGACTTGTT
AGGCTTTGACCGTGCTCTCATGAACCTTTAAAGTGAACCTTGCGAAAtga
gaaaaacactgttttcaaTCATATTGTATTTGTAAGCATCCAGCTTTTTA
GCTCCTTAAGATTAATTCGCTAACTTTTGCTGATGTTGGTAAAAACCTTG
CGCTGTACTATGTACGGATGTATTTCACTCGTCCAGTGAGAAAaacgacc
ctgccgacgcaTCTGACTGTCTGGTGTTCGTCCGATGTGCTACAATACAC
AAATTCTTAACACCGGACTTTTTCTTTAGCGTTTTGTCTcgcaccggacg
caccggaccgATTAACGCCTGTCCGGTGTTTGGATTGTCTAGTGGTTAAA
AGTTTTATCACTCGGCACCGGACATTCCGCGTCGTTGGGAAAACCTTAAC
TCTGTCCTCAAAGAAAAGGAACCGTTTGCCGTCATTCAACTCAATTTACT
TTACTCTCTTTTCTCTCTCTCTTCACAGCCGATGTCACCGGACGAATTGA
AGCAAGTGTGTAAGAAATACCGACAGAAGAAGACTGGTGAAGGTGGTGGA
GGAGCAATTGATGGAGATCCTATCAACTATGAACTCGATGAGACGGGCGA
TGAAGTGAACGAAGATGATCTAGTCTCCACAAATGGATCAACTGAACAGC
TTAATAAATTGGTGAGTTCGTTGTTCTCAtggtatgcaccattgcaatgt
cttccacggacccaaaacctgattggttgaaaggcgccgtggtatagtgg
tcattgaccttggttgctgcacaggcgactgaagCTCGATTCCCACACGG
TGTtgtggttcacttggcaagtgaatgaaccttcgtcCGGGTCAATCCAT
GCCATGTGAAGTTGGCTAGTCAGTTCagggtgctgacggggcgctaattg
aaagcgtctatgactgattttacatcacttacaatcaatcagctgttgga
tccgtgatgtaatgtcagaagtcattgcagtgatgcatatcatgatttag
cgagtttatgtactGATTGATGTCGAAGACTACGGTAAGTGAAGTTGACG
CAAAAAAGTCAATAGTTGATGTACAGccctatatcgcctttgctcaccta
aacagacgacggtattttagtgtttttaccGTTGttgagcaaagtggacg
gtgattttagcgacatgtcaactttgccgtataccgtctccttcgattta
tctcgaatacaaaAACTCGCTATTGGCTCCGATTGGGAGGTTTTTGTCGG
CTGATATTTATTCTTTAAAAATTCCAAGCACAAATGAGGACAGGTATAAA
ATCTGTTCATGTCAGTTTATGTTGAAAGCTGGGGAAGCCATTTCATCGAG
TTGGACTCGATCACTTTCTTTCAGGATCCTGATGAGGGTGCATCAGACAT
CAACAATCACAGTAGCGGTGCAAATTCATACAATGTCAGCACGCATGCGT
CAGATGTTGCAGCAGATTTGCCTTCAGAAGATGCCGAGCGGCACCCCGTT
ATACCAACAGAACAGACGAACGGTGAAACAGGTGCGGAAGAAACGCTCAT
CGGAACCATCCCTTCACCTACGGAACCATCCTTTGAAGCAACGGAAGATG
GCCGACACTCACCCAAAAAGACGTCGTCCGTCAGTAATTTCTTAAACGGC
AATATGGGGCAGGATGAGGCGCGAGAGAAAATCAAGAACGCCTTCAAACA
TGGCATACCAAACTTGGGAACACGCTCTTTGAGCAAAGCGTCCGATTTGT
TCCGTAAAAAGAAGAAAGGTAAAAACCGGTCGCATCGCCATCAACATTCC
GTCCACTTGACTGTTCCAAATGATGGTGGGGAAACAACCACCGACTTTGA
GGAAGGAGATTCAGACGCTTCCACAGACAACCGACTGGATGAAGGTCAGT
TAACAATCTGTTACTGGGTTGAGTTTAATCGACTAACAATTTGCATTTCT
CTGATCTGTAGCGTTATAGttaggctgcgcgcatccccagaatttatttt
gttataggggatgcgtatcgtgtatgaaattctcgtccgagaattacctc
aaatttggggtaaccaagatttgcataaatttacataatttcgtcacatc
caatcaaagaaagaaaaaaatgaagtcattgtgctgttgtttttataatt
atcaattttcattcattgaacaaagaaaaaaagaagtcattgtattgcta
tgacgcataatcaaaaaagaaaaaagaaaagacgggNACACCCCGTTATA
CCAACAGAACAGACGAACGGTGAAACAGGCGCGGAAGAAACGCTCATCGG
AACTATCCCTTCACCTACGGAACCATCCTTTGAAGCAACGGAAGATGGCC
GACACTCACCCAAAAAGACGTCGTCCGTCAGTAATTTCTTAAACGGNAAA
GTtgggacagaaatattttagacgatacgcatcccctatatcaaatcata
tcagaggggatgcgtgcagcctataTTATAGTAGGCCTGTGTAAGAGTCA
CCATTCGAAACCCTTTCGGTATAGCCTCTTGTAAGTCTATAATGGAGAAt
tcaaagtaatttttgtttatgaGACTTACCACAGTCTATTGACCTTTTAT
CTATGATCGTTGTATTTGCTTTATAGACATACTTTGCCCATGTCACGATT
CACACACAGGGACGGAATACACGAACGAGGTGAGCCTCCTTCTCTATGTT
CCGCCATTTACATACAGACAACTTTTCAACTCGTGTCAATATTAATGCTG
TCATATCGTGTCTGAAATCGAGAGGTTTATGTCAGACTACGTTTTCCGAC
AGGGAtgcaaccattgagtttaaagcccaaagggctagagtagaatatct
aacctttcccaggcaagaaaaggtgaatccacttatttcccatccagaac
gcaatcatgacgacggattgtatgtagcagttctttgtttttgaggacta
cattttttgaaatctagcgatagattctACTtttaaaaaccacgcgcggg
cgttctggaagAGAAATAAGTGGCATTTCCCATCTAGGAGTCTCGAGGAT
AGCCCTTCGGACATGGAAGTCAATGGACGCAACCATcgtaaaatataatt
ttctcaCATGAGTTTAAAGGGCAAATTTCCATTGTAAGACGAACGCAACC
TACTTTTTCTTCAACCAGGAGTTCGACATGGACGTGGACACACTTTATAC
TCATTTATTTGCACAAGATTCTGAACTCATGAAGCGTGTCTTCGAAGAGA
GAAAACATGAAAGTTAGTATTCCTCACTTTTTTTCACCTAACGAAGTGTT
TGCTACTTTTGGAGAAGGAATTTTAGAGAAACTAAAAAaatccttgtttt
tttttatataattttgcaGGAGCCAGTCAGCCAAAATAGAAAAACGAAGC
GGCTGCTTATGTtgaaattttcgtcatctttacatacgtgacttcatcag
catgtagctcaacaaaaaatcttttgataagGGAAGCTTgttttcactga
agattgctATCCATCCTGAatggcatgaaactttgaaTATGAAATTAACT
TgaatcgttttctttactcataCTGATAAAGGAAGCTTGAGATTTAacga
aaaaagtttgttataaTGACCACTCTTGAaattaaaggccggtctccact
tgtgcGCGCTTTGATCGCactagcgagattatgtatctggaattctctac
ggctacggctaaagtggcgagggaaatggcgagtaaggcaagtaatggcg
ggtgtaagcaagttcgatatttgacgtacgacatgatgtcgactttgctt
atacggtgttttggtgtttttcccgtacagagcaaagtagacaacgacat
gtcgcctttggtgacgacccgtacgctcagccccgcaaccgtagccgtag
aatatctccgatacataatctcgctactTTTTCGAACTttcacgctattg
gtcaaaagaaaaatgaagcaactccattggtgcaatctgacgtaacggtt
gaaaaaagttgaaaatgtgttcaactttttttcgagcgcgcgctacattt
ttatgacgtaatcttttttccaagcaaaaaggattgaagctaaAAGGTAC
GATCGCAGCGTGcgcaagtggaaaccggccttaACATTGATTAATTGTTT
CAGATTGGAGGTACACGGCACTTGAAGACGCAGGGGATCATCAGACACAA
ACATTAACATACACACTTAACCTCAACTATAGTATCGGCCCCAAAACGTC
GGAAACCGTCTCTAAGATGGTGAGAACCTCTTTCTTTTAAATATAGAAga
aatattaataaaataaaagtaaacgTTATTCAGTTATAACTAAAGGTTAG
GCGCGACTGATGAGAAATTGATAAAGTTTCAAGTTGATTATAGCCCAGTA
GTCACCAACTTAACCAAGGAACATATATTAATTAAGTACAAGTAAACGTT
ATTCAGTTATAACTAAAGGTTAGGGGAGACTGATGAGAAATTGACAAATT
TTCAAGTTGATTATAGCCCAGTAGTCACCAACTTAACCAAGGAACACATA
TTAATTAAATACAAGTAAACGTTATTCAGTTATAACTAAAGGTTAGAGGC
GACTGATGAGAAATTGATAAAGTTTCAAGTTGATTATAGCCCAGTAGTCA
CCAACTTAACCAAGGAACATATATTAATTTTAAATACAAATAACTTGATA
AAGTCTCAAGTTGATTATAGCCTAGTTGTCATAAGTGACATATTCAGTTA
TAAGTAAAGGTGAGAGGTGACATGGGATAAGAATGAAGAGAAATTGATTT
GGTGGTACTCATCTCGTGCTACGCTTGCGACGAGCTATATGCTCTACCAC
GTTTTTCGAGTGCCATCACTAAATTCCCATCCGTCTCATTCTAGAGCTGA
CAAGTCCATCGTGTTTCATTTCTGACTGCCAATCAatggattcgaatgtt
ttgaaattaaaacgctcaaaatcctaacataaaatataaaacaacCTTTC
AGGGGAAATTTACATAGCTCTTCTAGTGaataaaggaaaatgaaatttgt
GGCTTGGATAAACCTGAAGATGTGTGATCAGATGATAAATGATCAATTCT
TCCGCACATTTCAGTAACAAatcattttattgaaaagttcaTTCTCCTCT
TCTTTCTCATATTTTTAGGTGTTTCCAAAAGACAACAAACCAGGATCCTA
TTACGTCATCACAACAGAAAACCGCAGTTACGGTGTCCCGTATTCCGACA
GTTTCCACGCATCTGTCCGTTATTGCATCACGCGGGCCGTCGGTAATCGT
TCACGGCTAAAGTAAGTTTAATAGCGGGCATTTTGATCTTGCTCataatg
aaaaatattattacaaTTTTGATGATTACGTCAATCATTTTGAAAAGAGT
TTGCCAATGACGACTTTTATTCATGATTACATAtacttattttttgtttt
cagggtTCACGGTGACATCGTATATACGAAGAGAGTTTTCGGTCTCGTCA
AAAGTAAGCATCGTTTCATTCTTTTTACATAGTCATCGAACGTAGTGTCT
CTCATAGAACTCAACCAGAGTTGCATTTACCAATGTCCACCAACGTTAAT
TACCACACCACCTTGTAGAAAGATTCAAGAAAGGGGGTGTTCCTGATGAC
TTTGTTTAGCTGGCTGAACTTAATGTAGGTTAAGGTTGAGGCGTTTCATA
AACGGACGAATTATGTTTTGTTGTTATGCTCAGACCAATATCGCTATTTC
TAGCTTTTCTTTCACTTTCCTCTTTTGCTTTCAGACATGATTTCACGCAA
TGGGGACGAAGCTATGAGAAGCTATTATGTTTATCTTGGTAAGTGAGTCC
actgtttttattttcgttGAAATCTCAGGAAGAGCGTCTAAGCAGCCATT
CGTTGTTGTTCAAAGTCTTATCGTGTATATTGGTAGAACTGTAAGATACT
TGAGATATATACAAGAGATAATTTCATATTAGAGTGACGTTGGCTTGTTT
AGATCCTAGATGTTGATTTGAATCCTCAAGATTGCCACCAGGTCAAGGTG
ATATAATAGTGAAATTTCTATTATGCGCCTTTTCATAAAACTGGATTGTT
ACTTGTGTTAGTagcataaaaaaatttttcgggcCGCCAAAGATgttaaa
ttttggttgaatttaACTCGCACTTCACACGCgctaaaatataaacattt
aCATTTTCAGCTGAAGTTCTAAAAACCGAATCGGAATCGACGCCCATCGC
AACAAATCCAATCGGAATCGACCGACAGAAGCGCAAAtcgaaaaagaaag
ttttgacgAAGAAAGTTTCGAAAGAACCTGGCAAAAATATCGAATCGCAA
CGAAAGTCATCTTTACGTAAGTCGTTGGAGCGTTCTAAGAACTGTTTCAT
GTATAAACAACGtggctttttaagctttttagttccttgtaaattcattt
CTATTCGTTTAAGCCTAAGGATAGTTGAATGAttctcaaaaatttccaaa
taagcCAACAATGCAAACCTCccataatagaccttatcggagttttagat
ttttctaaaaaagcgatgcattgtgggattgtttccgAAGTCTttcaata
gaattccctcgaggaaaatttctattgtaatactcctgagacaatcccac
aatgcaaaaaatcaaaaactccgataagatctattgggctattccagaaa
aaatttgtaccccctatgttgcgGAGGTCTTTTTCGGGAAAAGTGACACC
ccggattttcaaattttcaagatccccctggattttttctcattttttag
actaccctggattttacctCCTCTGCAGTCCCACAGCCCCCTTGGATTTT
TCTAACACTAGACACCTTTCTTCTCAATTCTTTAGActaccctggatttt
acctCCTCTGCAGTCCCACAGCCCCCTTGGATTTTTCTAACACTAGACAC
CTTTCTTCTCAATTCTTTAGActaccctggattttacctCCTCAACATAT
AATTCTGCAGTCCCACAATCAGACTAGGATCTtggattttcaaccttttt
ctaCTGACCATGCTGGATTTTTGAgtttattttactgaccaccctggatt
ttttacctcgttttattaaccaccctggattttcgacctcatTTTGCTAA
CAACCCTGGATTTTCTCACTCAGAAAACTGAACCGCtctgaattttttta
ttctaaaaaacTTGACTACCCTGGATTTTTCCCCTTGAAAGACCGGACTA
CCCTTGATTTTCCTCCTCAACATATAGTAACCACCCTagatttttacact
cgaaaaaccggaccaccctggatttttcctCCTCAATATATGGTAACCAC
TTTATTTTCCataccaccctggacgtcacaccttctcaacatagggggta
cagattTCTGGAACAGCCCATTCAATATCTCTAATAATATGCTTTTTTGA
ATTGTTCAAATTGGTTtaattcttgaaaatttggCGTGTCTTCTAACCTC
ATCCATTTTTCTTGTAGATACACCCAAACCGCCCATTCCCGCCTCTCAac
aagaaaataataacatattCACACAAAGGTAAGACCCAGACGTAAATTTA
CAGAAATAGACTTCCttgtaaaattattttacttCAGGTTGTgtatctga
aatgaaaaaactacTTTTTTCGTGGAATGCTTTTATGCTTGCGACCCAGT
AAAAGCCCGATTGGTGATCTTGCcacattttgaatttctttttccctTGA
ACCATtcgactgactgactgactgactgactgactgactgactgatgAAC
TGGATGTATTGTTCATAATGGGTATGTTTGATGAGTAGTCAGCCTCGTTC
TAGTTTAAAATTTGTACTCAAAAGAAGACTCCGTGcgaatgtttttcttt
aattctttttgatttttttgttttcttttacagCGCTCTTTCATCCACGG
CACTCATCACGCTTAGTGTTATGTAAGTACTCTCTTATAATAACCGATGG
TGCTCTTGTTtacacgcttttctttttataagaacaagctaatttttgga
cctaccccggtggggtggaggtcctataaattaacctgtgttcgtccgtc
cgtccgtccgttcgttcgtctgttaccaacttttctcaggattgaatcat
aggaatcttttgattattggtacaaaggtgcaaaatggtagtggccaaaa
tgtgacggagcccgattttcgaaaaaaaatttttgggcaaatttgggcca
ataaacggctaaaaaacgggttttttggactttgtgaaaaattggatcat
taattttttctgattttttgcatgaaagtaggctaacatcattggtaaaa
gatgactcaagcagacttttgcaaaaaaattttgttggctcaaaaaacgc
atgtttatctataagaatcgctattaattagcatacatcaatgttcttag
tcaaattactcaatttttttatgagattgatgctttttttgctcaggagg
gcttacttttgaagaatttgtgtgtttagacatgaaattttggttgcttg
gcgtgtttttatagaaaaactggccaaattcgatatttttttataagcac
attatcaattacttaggtattagcttttctggagattggttctttcattc
tttatgattttttgcacaaagatgcataactataaaccctcgaatgtgac
ggagcccgattttcgaaagaaaatgtttatgggcaaatttaggccaaaaa
atggctaaaaaaaacgggttttttggatttggatcattaattttttcaga
ttttttgcatgaaaataggtaaaagatggctcaagcagattttggcaaaa
agattttgttggctcaaaaaacgcatgtttatctataagaatcactatta
ataagcatacatcaatgttcttagtcaaattactcaattctttgatgaga
tagatgtttttttgctcacgaagtcttgaatatgaaagaatattttacga
tcatgaaattttggtctctaaacgttttttttataagaaacaaacaacta
attttaatagatcgtcactatttgtgttctgaatgattttttgacggtca
tgctcacgtagatatcaattatatgtgtgttaaatgcataaccaggtagg
tccataaaagtatcacttgtttagcTGAGGCCCGGCTTtattattttgtg
atttttcttacCTTATTCACTTATTGACTAAAAAGAGGTTTTAAATTGGC
ATTTTCTAAGTCATTTTTAAAATCTGACGTTTGGATTGTTCTTTGTTTGT
TCTTGAGTTGGACCCAATCGAgctttgtgttcttataaaattgttcttta
taAAGGAGCGTGTACACgtcttttaataagaacaataagaacatccaaaa
tttttgaagcctaaaaatattcttatcattttcttattttcatcattttg
tgagtaaCCTTGTTCACTTTCTATAAGAAATCGGgcgttttagagtctgc
aaagccttaaaatgttctaaacctgttcttaaaatttgagctatcaagcc
ttatgtttttatatattttctcctgataaaaaaatgtgtatttgtTGAGA
AATAGCGGATGAAGTGACGCAAAAAATGTGAAGTTTATTTNACGTGTATT
TGTTGAGAACTAGCGGATGAAGTGACGCAAAAAATGTGAAGTTTATTTGT
TGTAGAGAGGTTTACTGTgttaacctttttgtttatgtttattttttagt
ATCTTCTTATTGCTTGGGACGAACCTTTACATTTTACGACGATTGGGATC
CTTAGAGGGAAACATGGTCGTCAGAAGCAGGGGCTGGACCCCAAAGTAAG
TCACACCCTTAACATTTCATTGTTATATAACGAGGTCTGTTTTCCCCCTC
ATTCTCCGCTTGTGGTAGCGTGCTGAGTCATTGGAGTTATTGTGTGTATG
TCATTAAATAAAGATTGttagaaaaaaagagagaaagttTGCCGCTTGTC
ACATTGCGACATCTTCTCTTGCAACTTGATACAATCAGTTCATTTTTGTT
TCCTGGGTCAGTAAGCCTTTTCCTTCAGCAAAAAACACAGGCATACATTA
GAGCTTCGATGGAACTTTCTTTTCTTAAtaatacagttgagtctccatac
AGTAACTCGAATACGCACGGGGACATAAATTTGCTCGaattaaggaaatt
ttgagtgACGAAATAAGGTTCATTAGGCagtgttaactgaagggacgaga
aaacctGTTTGagttaagaagacattcgagtCTCTACTGTATGTGATAAG
ACAGATGTCGAACCATCTACGACTTCACTTACAATAAGTTCCCTCTAGTC
AATTGGAATTAGAATAATTAGAACTTCATTTAGACTActattgtttttat
tcaaactgGCAGATGTGACACTGTTGCATGCACCTCTGAAAAAGATTCTT
GTGTCCTGGTTTACTCGAATGGTGATGATGATAAAAAAGTATTCGTACCC
TACACCCATGACTATTGAACTGGTATCTGACTTGAATCTTTGTAGTGTCA
GTGTGTTTTTAAATGTCGAATCTTCAACACTTTACCTATCACCGTGGATT
CATGACTGTTGGTTTGAATCTGAAGCTGAAGTCGACCGACGGGACAAACA
AGACCTTGCGTTTGATCTCGATCCTCTTGAAAGACCACTCAAACGGGACT
GGTGGCTGACATTCCTGGAATGCATATCCTTTCTTTGACATTGTGGAAAG
GATTGGGAGACAACGTCAGAGACTTTGcaagatttttgatatttcagATC
CGGGCATGAAGATATGGTCTGATTAATATGGATTGATATTTTAGATCCTT
GTATCTACCGCTTTTTCGTTTCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011569XLOC_011569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020605-exon-sc0000359-1491911889:136304..136339TCONS_00020605-exon-sc0000359-1491911889:136304..136339Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:136304..136339TCONS_00020605-exon-sc0000359-1510915933:136304..136339Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:136304..136339TCONS_00020605-exon-sc0000359-1575043694:136304..136339Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:136832..137014TCONS_00020605-exon-sc0000359-1491911889:136832..137014Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:136832..137014TCONS_00020605-exon-sc0000359-1510915933:136832..137014Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:136832..137014TCONS_00020605-exon-sc0000359-1575043694:136832..137014Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:137728..138247TCONS_00020605-exon-sc0000359-1491911889:137728..138247Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:137728..138247TCONS_00020605-exon-sc0000359-1510915933:137728..138247Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:137728..138247TCONS_00020605-exon-sc0000359-1575043694:137728..138247Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:138980..139032TCONS_00020605-exon-sc0000359-1491911889:138980..139032Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:138980..139032TCONS_00020605-exon-sc0000359-1510915933:138980..139032Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:138980..139032TCONS_00020605-exon-sc0000359-1575043694:138980..139032Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:139522..139615TCONS_00020605-exon-sc0000359-1491911889:139522..139615Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:139522..139615TCONS_00020605-exon-sc0000359-1510915933:139522..139615Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:139522..139615TCONS_00020605-exon-sc0000359-1575043694:139522..139615Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:140507..140622TCONS_00020605-exon-sc0000359-1491911889:140507..140622Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:140507..140622TCONS_00020605-exon-sc0000359-1510915933:140507..140622Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:140507..140622TCONS_00020605-exon-sc0000359-1575043694:140507..140622Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:141522..141664TCONS_00020605-exon-sc0000359-1491911889:141522..141664Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:141522..141664TCONS_00020605-exon-sc0000359-1510915933:141522..141664Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:141522..141664TCONS_00020605-exon-sc0000359-1575043694:141522..141664Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:141807..141856TCONS_00020605-exon-sc0000359-1491911889:141807..141856Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:141807..141856TCONS_00020605-exon-sc0000359-1510915933:141807..141856Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:141807..141856TCONS_00020605-exon-sc0000359-1575043694:141807..141856Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:142138..142191TCONS_00020605-exon-sc0000359-1491911889:142138..142191Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:142138..142191TCONS_00020605-exon-sc0000359-1510915933:142138..142191Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:142138..142191TCONS_00020605-exon-sc0000359-1575043694:142138..142191Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:142564..142719TCONS_00020605-exon-sc0000359-1491911889:142564..142719Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:142564..142719TCONS_00020605-exon-sc0000359-1510915933:142564..142719Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:142564..142719TCONS_00020605-exon-sc0000359-1575043694:142564..142719Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:143871..143931TCONS_00020605-exon-sc0000359-1491911889:143871..143931Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:143871..143931TCONS_00020605-exon-sc0000359-1510915933:143871..143931Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:143871..143931TCONS_00020605-exon-sc0000359-1575043694:143871..143931Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:144287..144325TCONS_00020605-exon-sc0000359-1491911889:144287..144325Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:144287..144325TCONS_00020605-exon-sc0000359-1510915933:144287..144325Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:144287..144325TCONS_00020605-exon-sc0000359-1575043694:144287..144325Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:146103..146198TCONS_00020605-exon-sc0000359-1491911889:146103..146198Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:146103..146198TCONS_00020605-exon-sc0000359-1510915933:146103..146198Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:146103..146198TCONS_00020605-exon-sc0000359-1575043694:146103..146198Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1491911889:146766..147229TCONS_00020605-exon-sc0000359-1491911889:146766..147229Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1510915933:146766..147229TCONS_00020605-exon-sc0000359-1510915933:146766..147229Clytia hemisphaericaexon
TCONS_00020605-exon-sc0000359-1575043694:146766..147229TCONS_00020605-exon-sc0000359-1575043694:146766..147229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:136304..147229 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76996	0.284685	0.153355	0.000149065	2.84476	4.16953	0.378934	0.00396833	2.07321	1.4544	5.09047	1.29233	0.0376079	0.870711	2.95683e-05	2.05707	0.979771	2.39162	1.30592	1.00508	0.0723643	0.43051	2.06083	2.43699	1.63215	4.96824	1.46331	0.081441	0.892979	1.67838
Blast
[Close]
BLAST of TCONS_00020605 vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.539e-16
Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 1 
Query:  733 DEDILCPCHDSHTGTEYTNEEFDMDVDTLYTHLFAQDSELMKRVFEERKHEN-----WRYTALEDAGDHXXXXXXXXXXXXXSIGPKTSETVSKMVFPKDNKPGSYYVITTENRSYGVPYSDSFHASVRYCITRAVGNRSRLKVHGDIVYTKRVFGLVKNMISRNGDEAMRSYYVYL-AEVLKTES 1272
            DE  +   ++  +G +Y NE F+  VD LY  LF  +S   +   E+R+  +     W+    E+ G+     L      N  + PKT+         K ++    YVI  E  ++ VPY D F+   RY +TR   N+SRL+V  ++ Y K+ +GLVK  I +N    +  Y+ +L +E+ KTES
Sbjct:  360 DEGEVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFT-NSPFQRDFMEQRRFSDIIFHPWKK---EENGNQSRVILYTITLTN-PLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSRLRVSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTES 540
The following BLAST results are available for this feature:
BLAST of TCONS_00020605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM1B8.539e-1631.18GRAM domain-containing protein 1B OS=Homo sapiens ... [more]
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