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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020586 ID=TCONS_00020586|Name=TCONS_00020586|organism=Clytia hemisphaerica|type=transcript|length=1194bp
CTTCAACCCACCTGGATCAAACACTTCGAAACCATGACTCAACTTGGAGA
AATTCAATTCCGTCGTGCAGTCATCCCAGAAGACGCCATCAGTACTGACA
TCCAAACATTCGACTTTGGAGATGCCAGCCAATCATTGGTATGTGTTTGC
ATTTATGCTAGATACACTCAATGAAATGGTCAATTTTCATCTCAACTTGT
CTTCGCTCGATCTCGTACTGTACCAAATGGATTGTCACTCCCTCAAGCTG
AACTCATGGCATCTCTCATCAACACACATACCGGTGAAGTTGTCAAACGC
TCATTTGGTCAATATCACAAATCCAACATCAAATTCACTGACAGTCAGAT
TGCGCTTCACTGGATTACAAACGATGAGAAACCCCTAAAGCTTTGGGCTC
GTAATCNAGTCAGATTGCGCTTCACTGGACTACAAACGATGAGAAACCAC
TAAAGCTCTGGGCTCGTAATCGTGTCATAGACATCAACAGATTCTCCGAT
AGAAATCAATGGTTCTACATCAACACTGCTGACATGATGGCAGACATCGG
CGCTCGACGTGGAGCAACACTTGAAGATGTACAACCAGATTCACCATGGT
TCAATGGACATCAATGGATGCATTTACCAATTTCAGACTTTCCAATACAA
TCAGCACAAGATCTACGTCTTTCAGCATCTGACACGAACGAAGTGGAGAA
AGAACGTATGGTACCCATCAAATATGTGTCAACCTATCACACTATGAATC
TTGTGCAACAAAGATACAAATTCAGCCAATACCTCATCGATCCAAACCGT
CATCGATTCTCAACTGTTATCAGAATCTTTGCCTATGTTCGAAGATACTC
AAAGACACTCTTCAATCGCTCCAAAGACAAATCATCATCAAAGTCTTCAA
ATCAACAACTCCAAAATATCAAAGTGGATGTATCTTTGGTTCCCATGCTC
ACAaacaaagaaattgaagaagCCGAACAATACTTCTTCAAGAAATCATC
ATCAGTGCTACTGAAGTTCCTTCCTAAATCAAAATACGAACGTATCACCA
AGGATGTCCAAGGCATATTGACATACACTGGTCGGATTCTGCCAGATCAG
GAAGTGTTAATTGTTTGCAGATTCACTGGCGTTATGAAAGACCTATCATC
AGATACATTCTGTGTACCTGTGATGGACAGATATTCACCCGTTT Run BLAST on NCBI protein sequence of TCONS_00020586-protein >TCONS_00020586-protein ID=TCONS_00020586-protein|Name=TCONS_00020586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MMADIGARRGATLEDVQPDSPWFNGHQWMHLPISDFPIQSAQDLRLSASD
TNEVEKERMVPIKYVSTYHTMNLVQQRYKFSQYLIDPNRHRFSTVIRIFA
YVRRYSKTLFNRSKDKSSSKSSNQQLQNIKVDVSLVPMLTNKEIEEAEQY
FFKKSSSVLLKFLPKSKYERITKDVQGILTYTGRILPDQEVLIVCRFTGV
MKDLSSDTFCVPVMDRYSPV Run BLAST on NCBI transcript from alignment at sc0000358:287423..288616 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020586 ID=TCONS_00020586|Name=TCONS_00020586|organism=Clytia hemisphaerica|type=transcript|length=1194bp|location=Sequence derived from alignment at sc0000358:287423..288616 (Clytia hemisphaerica)
AAACGGGTGAATATCTGTCCATCACAGGTACACAGAATGTATCTGATGAT
AGGTCTTTCATAACGCCAGTGAATCTGCAAACAATTAACACTTCCTGATC
TGGCAGAATCCGACCAGTGTATGTCAATATGCCTTGGACATCCTTGGTGA
TACGTTCGTATTTTGATTTAGGAAGGAACTTCAGTAGCACTGATGATGAT
TTCTTGAAGAAGTATTGTTCGGcttcttcaatttctttgttTGTGAGCAT
GGGAACCAAAGATACATCCACTTTGATATTTTGGAGTTGTTGATTTGAAG
ACTTTGATGATGATTTGTCTTTGGAGCGATTGAAGAGTGTCTTTGAGTAT
CTTCGAACATAGGCAAAGATTCTGATAACAGTTGAGAATCGATGACGGTT
TGGATCGATGAGGTATTGGCTGAATTTGTATCTTTGTTGCACAAGATTCA
TAGTGTGATAGGTTGACACATATTTGATGGGTACCATACGTTCTTTCTCC
ACTTCGTTCGTGTCAGATGCTGAAAGACGTAGATCTTGTGCTGATTGTAT
TGGAAAGTCTGAAATTGGTAAATGCATCCATTGATGTCCATTGAACCATG
GTGAATCTGGTTGTACATCTTCAAGTGTTGCTCCACGTCGAGCGCCGATG
TCTGCCATCATGTCAGCAGTGTTGATGTAGAACCATTGATTTCTATCGGA
GAATCTGTTGATGTCTATGACACGATTACGAGCCCAGAGCTTTAGTGGTT
TCTCATCGTTTGTAGTCCAGTGAAGCGCAATCTGACTNGATTACGAGCCC
AAAGCTTTAGGGGTTTCTCATCGTTTGTAATCCAGTGAAGCGCAATCTGA
CTGTCAGTGAATTTGATGTTGGATTTGTGATATTGACCAAATGAGCGTTT
GACAACTTCACCGGTATGTGTGTTGATGAGAGATGCCATGAGTTCAGCTT
GAGGGAGTGACAATCCATTTGGTACAGTACGAGATCGAGCGAAGACAAGT
TGAGATGAAAATTGACCATTTCATTGAGTGTATCTAGCATAAATGCAAAC
ACATACCAATGATTGGCTGGCATCTCCAAAGTCGAATGTTTGGATGTCAG
TACTGATGGCGTCTTCTGGGATGACTGCACGACGGAATTGAATTTCTCCA
AGTTGAGTCATGGTTTCGAAGTGTTTGATCCAGGTGGGTTGAAG Coding sequence (CDS) from alignment at sc0000358:287423..288616 >TCONS_00020586 ID=TCONS_00020586|Name=TCONS_00020586|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000358:287423..288616 (Clytia hemisphaerica)
AACGGGTGAATATCTGTCCATCACAGGTACACAGAATGTATCTGATGATA
GGTCTTTCATAACGCCAGTGAATCTGCAAACAATTAACACTTCCTGATCT
GGCAGAATCCGACCAGTGTATGTCAATATGCCTTGGACATCCTTGGTGAT
ACGTTCGTATTTTGATTTAGGAAGGAACTTCAGTAGCACTGATGATGATT
TCTTGAAGAAGTATTGTTCGGcttcttcaatttctttgttTGTGAGCATG
GGAACCAAAGATACATCCACTTTGATATTTTGGAGTTGTTGATTTGAAGA
CTTTGATGATGATTTGTCTTTGGAGCGATTGAAGAGTGTCTTTGAGTATC
TTCGAACATAGGCAAAGATTCTGATAACAGTTGAGAATCGATGACGGTTT
GGATCGATGAGGTATTGGCTGAATTTGTATCTTTGTTGCACAAGATTCAT
AGTGTGATAGGTTGACACATATTTGATGGGTACCATACGTTCTTTCTCCA
CTTCGTTCGTGTCAGATGCTGAAAGACGTAGATCTTGTGCTGATTGTATT
GGAAAGTCTGAAATTGGTAAATGCATCCATTGATGTCCATTGAACCATGG
TGAATCTGGTTGTACATCTTCAAGTGTTGCTCCACGTCGAGCGCCGATGT
CTGCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020586-exon-sc0000358-1491911889:287423..288616 | TCONS_00020586-exon-sc0000358-1491911889:287423..288616 | Clytia hemisphaerica | exon |
| TCONS_00020586-exon-sc0000358-1510915933:287423..288616 | TCONS_00020586-exon-sc0000358-1510915933:287423..288616 | Clytia hemisphaerica | exon |
| TCONS_00020586-exon-sc0000358-1575043694:287423..288616 | TCONS_00020586-exon-sc0000358-1575043694:287423..288616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:287423..288616 . |
Blast
The following BLAST results are available for this feature:
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