TCONS_00020580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020580
Unique NameTCONS_00020580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020580 ID=TCONS_00020580|Name=TCONS_00020580|organism=Clytia hemisphaerica|type=transcript|length=598bp
TCGCTACTGACTGAGGACTacagtaaatcagcacttttaccatcTTCATT
TTTGCgagtcaaaactgcgggttattccatcGACCTCATAATcttacata
aactcggtaatataaAACAACCGGCAGAGTTGGTAAAATTTTATATGATA
CCAAGTCTTGAAACCACTTTACCAACTCCCCTGTTTAAAATACCTAATCT
TCTCGCGTCATTTATGTCAAAAGAACTCGGGGTACCTAAGGCACTACCTA
TTGGTCGCATGAGGTTCCGCCCCTTAACGTAaatgttttttaggtttttt
cgaaacattttgaTATAGAATGACGTCACAGAAATAAGAATAGAAAGCTT
ttaacttcaaaacttttttcgtGGGTCCTTGTATCGATTTACAccattgg
tgaaaatttgaagtcgaAAGCTTTCTCCTATTTGAAGTTACTCAAGATAT
TCTTTTTATGGGCGACATCGAAATGGGGTGAAATTGAGGTTTTCATCCTT
TTCAGCGGCCATCTGACTATGCTCCATTTCTAGGTACCCCGAGAATTCTG
ACAGTTGTTAGAAACTAGGAAAAggaaaaatcaagttaaaaacaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000358:177011..177608

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020580 ID=TCONS_00020580|Name=TCONS_00020580|organism=Clytia hemisphaerica|type=transcript|length=598bp|location=Sequence derived from alignment at sc0000358:177011..177608 (Clytia hemisphaerica)
tttttgtttttaacttgatttttccTTTTCCTAGTTTCTAACAACTGTCA
GAATTCTCGGGGTACCTAGAAATGGAGCATAGTCAGATGGCCGCTGAAAA
GGATGAAAACCTCAATTTCACCCCATTTCGATGTCGCCCATAAAAAGAAT
ATCTTGAGTAACTTCAAATAGGAGAAAGCTTtcgacttcaaattttcacc
aatggTGTAAATCGATACAAGGACCCacgaaaaaagttttgaagttaaAA
GCTTTCTATTCTTATTTCTGTGACGTCATTCTATAtcaaaatgtttcgaa
aaaacctaaaaaacattTACGTTAAGGGGCGGAACCTCATGCGACCAATA
GGTAGTGCCTTAGGTACCCCGAGTTCTTTTGACATAAATGACGCGAGAAG
ATTAGGTATTTTAAACAGGGGAGTTGGTAAAGTGGTTTCAAGACTTGGTA
TCATATAAAATTTTACCAACTCTGCCGGTTGTTttatattaccgagttta
tgtaagATTATGAGGTCgatggaataacccgcagttttgactcGCAAAAA
TGAAgatggtaaaagtgctgatttactgtAGTCCTCAGTCAGTAGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011553XLOC_011553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020580-exon-sc0000358-1491911889:177011..177608TCONS_00020580-exon-sc0000358-1491911889:177011..177608Clytia hemisphaericaexon
TCONS_00020580-exon-sc0000358-1510915933:177011..177608TCONS_00020580-exon-sc0000358-1510915933:177011..177608Clytia hemisphaericaexon
TCONS_00020580-exon-sc0000358-1575043694:177011..177608TCONS_00020580-exon-sc0000358-1575043694:177011..177608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:177011..177608 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182405	0	0	0	1.22992	0.291569	0.117255	0.219546	0.153709	0	0.0924003	0.303702	0.121312	0	0.103575	0	0	0.0701747	0	0	0.0881797	0.129033	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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