|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020565 ID=TCONS_00020565|Name=TCONS_00020565|organism=Clytia hemisphaerica|type=transcript|length=205bp
AGAGAGCCTGTACAAGCTGTGGATTGCGGACATCGTTTTTGTACAAAATG
TATTGGAGAATTTCATCTGATTAAcCCTGGAAAATGTCCAAAGGATTGGC
AAGATATCCAGGTTTTCCCAGACGTTGGAAAAAAGAGAGAAATTTTGAGT
CTGAAAATCCGATGTAAAAATTTTACCGTTGGTTGCACGTGGCAAAACGA
ACTCC Run BLAST on NCBI transcript from alignment at sc0000358:87099..92304- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020565 ID=TCONS_00020565|Name=TCONS_00020565|organism=Clytia hemisphaerica|type=transcript|length=5206bp|location=Sequence derived from alignment at sc0000358:87099..92304- (Clytia hemisphaerica)
AGAGAGCCTGTACAAGCTGTGGATTGCGGACATCGTTTTTGTACAAAATG
TATTGGAGAATTTCATCTGATTAAGTAAGAAACCATTGTTTTAAAAATAA
ATTATTAAGAATCAAGCTGATTGTACAAAACTTTCTTAAACGAAATATTT
AAGTTTGAGCTATTTATCAAAGCTTACGTAAGGGCAGTATACACTTGTTC
AGTTAGTTAGTTTATCATTATATGTTTTCTATTTTAGCCCTGGAAAATGT
CCAAAGGATTGGCAAGATATCCAGGTCAGTGATAGTTATCTATTTAACAA
GCAAATTTTGTATTCTTTACTTATGGACTTGAAAGGGGTTTATAATTTTA
ACCAATTATGGGGCTGAAATTGTTTTTATTCGTTCTCATAAAAAAGTGTG
TATACCTTCCATTAAAAATTTACTCGAAATATTTTTAGGTTTTCCCAGAC
GTTGGAAAAAAGAGAGAAATTTTGAGTCTGAAAATCAGATGTAAAAACTT
TACCGATGGTTGTAAATGGCAGAACGAGCTCCGAGAGGAAGAGGCAAGTA
AAATGTTTCCGAATTTTAATCTTAGTAAAGGCCTGCCATTCAGGTCCAAC
CTAAAATTCCATAAAACTATTTGAATTGGGTGATAGATAATGACTCTGGA
AATCTTGACCCATATAAATTAATTTACTTGATTCACTCTTAGGAGCACTT
GAAGAATTGTGGATACGAATCAGTGGCTTGCCAATTAGAATGTGGAGAAT
TTGTGCTGCGCAAAAATGTAAGTAGATCTAAGAGGGTTTTTCAAAGATGA
ATAAAATGTGTGAACTGCCAATTTTTTTGGAACAAACTTAAAAAAAAGTA
AATAGGACCAGTGTTCTTGTTTATCTTTGTAGCAAAGTAAATTCTGTTGA
ACGATTTCTCATGTTCTCAGAGATGAAACCTTAACAGAAATTAGCCGAAC
ATCTCGTCCAAAATCAATCCTTTTTCCAGCCGGATACTAGATCAATTCAA
AGTTTTTAATTAAATTCTTTTTACTTTATCCAACAGATACAAAACCATAT
AGATACAGTTTGTCCTTGTGTATCTCCCTGTGAATATCAAGACTTTGGAT
GCACGTTTAAGGTAACTTTCTTTTCATGATTTGTACAAGATATTTACAGC
AGAGCCTTCATAACTTGAATCGCAAGTATGAATGTTATGCAACTGCTTTT
ATTTTTCAGGGAACAAAGGAATCACTCCAAAACCACATGGCAAAAAATGT
GACCACTCACATATCACTAGAAATGAAGCTAGAATTACAAAAAGTGAAAG
ATGAATTTAACAAACAGTTGCGAGCTAAAGACCAGGTAATGGTTCGAGTA
AAGAAAGAGCTGGATAAAATGAAATCGACAAATGAAGAGCTCATAGAAGA
TTTGCAAGCAAAGGGTAAACAAATTGGCTTTCTAACAGAAAAGCTAAAAA
TCATTGACGAAATTGAAAATGAAACCAAACGCAACAAAGACGATATTGAG
ACTAACAAGGAGAAGTTTAACAAAGATTTAGCGACCACTAAAAAGGAATT
GGCTCGAATAGATAAACAAATCGCTACCAAGTCGCCAGACTGTAACTTGC
TTGAGGAGATCGGAGCTAAAGCGAATATAGATAACCTGGAGTCTCTAGTG
ACTCATGAAAAATTCAAAAGTTTGGAAAGACAACTTGCACAACAGGACAA
ATTGACACTTGAAATTCTACTAACTCCAAAATGTCCTTTCCTTTGGTTTA
TCGATAATTTCAAAGAAATATTCAATATAACATTGGGTCGAAAGGGTACT
TTGTATTCACCTCCATTATTTACAGAAAAGGGATATCATGGGCGTTTAAA
AGTATATATAAAGGATTCACCACAAGGCAAGGCAGACCAGATATCTGTTT
ACTTTGACAATTTGAAAGGACCTTATGATGAAATGTTAGAATGGCCGATG
CCTTTTACATCACTGAACTTTACTCTTTTTATCAACGGGAAGGAAGTTTC
GAAAGCTTCGTCGAAGAGTGTTGAAAGATATAAAACTTGGACAGAACATT
TCACTCGTCCAATCAATATTAAAGGTCGAGCTTTAGGACGACCTGCCTTT
CACAAGACCTTGATAGAGAATCTAACTGATAAAGATATTGTTGCAATCAA
ATTTCATACCGAATGATAGATTCTTACTCCGTATATATCCACATAAAATA
CATAAACGGCATAATTTTTTGAAAATCATCAAGTGTGATTAGTACCAGCG
AAAAGAGCGCACAAAACATCTTTTTATATATTTTCCTATCGAAAGTTACA
AGGGTCTGTAATTTGCTGAGCTGATGACGACAATTAGAACATTGTACATA
CAACACCAGAATTTTTTACTTTTTTTAGATGGAAGAATTCGAGAAGCTTG
GAATTGTTAAATACTATTGTGGGCTTTATGCTTCAGAATATTTTTATGAC
AGGGTGAACCCTGCTATTACATACTTCAGAATATTTTCATGACAGTTTGA
ACCCTATTACATACTTCGGAATATTTTTATGACAGGGTGAACCCCTATTA
CATACTTCGGAATATTTTTATGACAGGGTGAACCCTATTACATGCTTCAG
AATATTTTTATGACGTGAACCCTATTACATATTTCAGAATATTTTCATGA
CAGGGTGAACCCTATTACATACTTCAGAATATTTTTATGACAGGGTGAAC
CCTATTACATACTTCGGAATATTTTTATGACAGGGTGAACGCTATTACAT
ACTTCAGAATATTTTTATGACAGGGTGAACCCTATTACATACTTCAGAAT
GTTTTTATGACAGGGTGAACCCATCACATACTTTAGAATATTTTTATGAC
AGGGTGAACCCTATTACATACTTCAGAATATTGTTATGACAGGGTGAACC
CTATTACATATTTCAGAATATTGTTATGACAGGGTGAACCCTATTACATA
CTTCAGAATATTTTCATGACAGGGTGAACCCTATTACATACTTCAGAATA
TTTTTATGACAGGGTGAACCCTATTACATACTTCGGAATATTTTTATGAC
AGGGTGAACGCTATTACATACTTCAGAATATTTTTATGACAGGGTGAACC
CTATTACATACTTCAGAATATTGTTATGACAGGGTGAACCCATCACATAC
TTTAGAATACTGTTATGACAGGGTGAACCCTATTACATATTACAGAATAT
TGTTATGACAGGCTGTACCCATCACATACTTTAGAATACTGTTATGACAG
GGTGAACCCTATTACATATTTAAGAATATTGTTATGACAGGCTGTACCCA
TCACATACTTTAGAATACTGTTAGACAGGGTGAACCCTATTACATATTTA
AGAATATTGTTATGACAGGCTGTACCCATCACATACTTTAGTTAATATTA
CGTTTTCATCTCCGAGCAGAATCTGATTACTCTACGCTGGGACTCCTCCG
TAAGAGATTCTGCCCAGGTTTGGCGGACTACCTTGATCTTTTTTATTCAG
ATTTGAGATAAATATTATAAATGAGATTTTGAGCGATTTGATTGGGTAAA
AAAAAACAATCGCACAAAAGTCAAACGGCAATAAACACGAATATTAAAAC
TCTTTCGCTTTGGCTTTCGTTTTCAAGCAAAAAGCAACGCGGTTTTGGAT
GTTCTAGCTGAACAACCAGGCCAAATCGCCACATCCCCTTAGAGCAAGGC
GTAGTGCGCTCAGAAAAGATGACCTGTTACTAGATTATGCTTAAGTAGAC
GGAAAAGAATTATGCAGCGGTGGTACATTTGACTTAATTTATATTCATCA
TATTAACCTTTTATCATACTTACAAGTGAATTTTGAAAAACTGAATATGG
AATTGTGAATTTTTTGATATTTTTATCTGCAATTTTACATTTTCCATCTT
TTCAAAGAAAAACTTTCCCTTTTCATGGAAATACTTAAAGTAAAAATATT
TGTTTCAAAATTCTTATGTAAAAGAGTTTCCCAAAATTGGATGAATAGTG
GAAAAAGACAAATAAAAATACTACGGTGAAAATCAATGTATCAAAGTTTA
ATAAAACTGAATTAGAGTTATGATTAATTCATTCCCTTAGCTATGCAACA
GTAATTTTTGAATTAAACTAAATTTGACACAAATTGGAAAGAAATCTTTC
AGTGTATAATATCAACAGGGTGTTAGTTAAGTAAATCGATTTTACTGTTT
AAAATCCATGTTGACCCGGTGGTAGGTAGCAATTAATATAGATTGTTGTT
TTGGTCCTGCGTAGGTCTAAAAAAAGGTAAGAATGCGTTCCTAAATCTAC
AATATTTGGAACTATAATTCGCTACGATAAGTTACTTCTTTATTTCTCCA
TATTTTGCTCGAAGCTGTTTCTTTCTTGAGCACTTTGCGATTCTATTTAT
TTCACTGAGTCTACAATATATAAATAAATTTAATTCATAATTTTGAATGT
TTCTTTAAATTTTGTGAAACTTTTAAGCCATACAAATAAGGAATCTTCGC
ACCTATCCAACTCTTTTTTTAAAGTTTAAGAGAATCTGAAATGGCAGCTT
GCAACCCTAACGAGCTTGGATTCGACGTTATATTTGCATGGGAAGATGGG
AAAGATGACCAGAATCAAAATGCTCAGATTGATGGAGCTATAAACCGCGA
TGACATCACATGTGCAATATGTCTTTTGGTTTTGAGAGAGCCTGTACAAG
CAGTGGATTGCGGACATCGTTTTTGTACAAAATGTATTGGAGAATTTCAT
CTGATTAAGTAAGAAACTTTTTAATTTTAGGAACAAAATCTGTAAATCGA
ACTGATTGTTGATGTTCACAGTCTTTAAATCTCAAAACATTTTTGTGCTT
TCTATTTTAGCCCAGGAAAATGTCCGAAAGATTGGCAAGATATCCAGGTT
AGTTGTACTTTCACTCTACAGTTATATGGGGGGCCCCTTATATTGAAATG
AAAGAAATATTAAAGGGGATTATCAACGAAAAGAAGCGACAAAAACAATT
AAGAAATCCCATTACTCTCAGGTACCTAATAGAGGTTGGAATAAGTGGGG
GGGTTGGACGGCTATTAGGTACCCGAGAGTAAGAACGCATACCGTACCTT
TAAAATTTTCAGGTTTTCCCAGACGTTGGAAAAAAGAGAGAAATTTTGAG
TCTGAAAATCCGATGTAAAAATTTTACCGTTGGTTGCACGTGGCAAAACG
AACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020565-exon-sc0000358-1575043694:92231..92304 | TCONS_00020565-exon-sc0000358-1575043694:92231..92304 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1575043694:92031..92067 | TCONS_00020565-exon-sc0000358-1575043694:92031..92067 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1575043694:87099..87192 | TCONS_00020565-exon-sc0000358-1575043694:87099..87192 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1510915933:92231..92304 | TCONS_00020565-exon-sc0000358-1510915933:92231..92304 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1510915933:92031..92067 | TCONS_00020565-exon-sc0000358-1510915933:92031..92067 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1510915933:87099..87192 | TCONS_00020565-exon-sc0000358-1510915933:87099..87192 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1491911889:92231..92304 | TCONS_00020565-exon-sc0000358-1491911889:92231..92304 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1491911889:92031..92067 | TCONS_00020565-exon-sc0000358-1491911889:92031..92067 | Clytia hemisphaerica | exon |
| TCONS_00020565-exon-sc0000358-1491911889:87099..87192 | TCONS_00020565-exon-sc0000358-1491911889:87099..87192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:87099..92304 - |
Blast
The following BLAST results are available for this feature:
|
