TCONS_00020553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020553
Unique NameTCONS_00020553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020553 ID=TCONS_00020553|Name=TCONS_00020553|organism=Clytia hemisphaerica|type=transcript|length=732bp
CAAGGTACTTAGATCAGAAGCTTTTGAATTTAAGATTACTTTCTAGTGtt
aatcgaaatttttatcagTGTTTGAGTTCCCGTGTTTCCTACGACCTAAA
TTTCTCTAGAGAGTCAGATGACGAGTTTTCAAGAACCAGGGAGTGTAAGA
TAATccgtgatattcatgacgtaatgttttatacgaaAGCACCCCAAAAG
TCCCAGGGTGTTCGccattgaaatttgaatttaaaaaatgaaactagTGG
CAAACGCACGGGCTGTTTTGGGCGCTTCcttataaaagattacgtcatga
atagaCCTCTTCACAAAttcgtcacgaacatcacttgcctcgttttgaaa
ttattgccatggtgatcaactcccagcagattttattaaaactacttcct
attcacagaaaaatcatttaatgtctcaagggacataaacaccatggtaa
ttgtttgaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaaggt
ctattaatatCATGAAATTCTCCTTATCTTTATAGGACTTGAAGAAAGTA
CTATCTACCTTCAAAGCTACGTCTGAGAACGCTGACAAACGTGATGGTTC
AGCACCACTACTCGAGATACCATCTTTGAAAGCACCGTTAGCTCGTTATT
CATCAGGCGAAGGGATATCTTTACTGCAGAAATTGGTATCTGAACAATCA
TCGAAATTCATTGCTCAATCAGAAGAACAGGT
Run BLAST on NCBI

transcript from alignment at sc0000358:97963..98694+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020553 ID=TCONS_00020553|Name=TCONS_00020553|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0000358:97963..98694+ (Clytia hemisphaerica)
CAAGGTACTTAGATCAGAAGCTTTTGAATTTAAGATTACTTTCTAGTGtt
aatcgaaatttttatcagTGTTTGAGTTCCCGTGTTTCCTACGACCTAAA
TTTCTCTAGAGAGTCAGATGACGAGTTTTCAAGAACCAGGGAGTGTAAGA
TAATccgtgatattcatgacgtaatgttttatacgaaAGCACCCCAAAAG
TCCCAGGGTGTTCGccattgaaatttgaatttaaaaaatgaaactagTGG
CAAACGCACGGGCTGTTTTGGGCGCTTCcttataaaagattacgtcatga
atagaCCTCTTCACAAAttcgtcacgaacatcacttgcctcgttttgaaa
ttattgccatggtgatcaactcccagcagattttattaaaactacttcct
attcacagaaaaatcatttaatgtctcaagggacataaacaccatggtaa
ttgtttgaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaaggt
ctattaatatCATGAAATTCTCCTTATCTTTATAGGACTTGAAGAAAGTA
CTATCTACCTTCAAAGCTACGTCTGAGAACGCTGACAAACGTGATGGTTC
AGCACCACTACTCGAGATACCATCTTTGAAAGCACCGTTAGCTCGTTATT
CATCAGGCGAAGGGATATCTTTACTGCAGAAATTGGTATCTGAACAATCA
TCGAAATTCATTGCTCAATCAGAAGAACAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011537XLOC_011537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020553-exon-sc0000358-1491911889:97963..98694TCONS_00020553-exon-sc0000358-1491911889:97963..98694Clytia hemisphaericaexon
TCONS_00020553-exon-sc0000358-1510915933:97963..98694TCONS_00020553-exon-sc0000358-1510915933:97963..98694Clytia hemisphaericaexon
TCONS_00020553-exon-sc0000358-1575043694:97963..98694TCONS_00020553-exon-sc0000358-1575043694:97963..98694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:97963..98694 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.709461	0.681223	1.97955	1.8412	1.13259	0.331968	0.63624	0.587534	0.514606	0.33013	0	0.267226	0.361281	0.870454	0.186175	0.220045	0.312391	0.336071	0.686376	0.433148	1.31876	1.38051	1.03898	0.652152	0	0.215728	1.56785	1.04283	0.621412	1.1147
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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