|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020543 ID=TCONS_00020543|Name=TCONS_00020543|organism=Clytia hemisphaerica|type=transcript|length=1500bp
aaatataaaaaaacacaataaCATCTAAGACATCCTAAGCTTTAAAAAGG
CACTACGAGGGAGGgtttgttaaattttgatgagtGTTTTCGTTTCAATC
AATAGAgcgtgaaatattttttaatcacTCATTCATTTCAAAAGACGGGG
GTAGTCAAAATTTCTGATTCTAAAAGAAGCATaccaatattgaaaaaaaa
aatgaaattttcctcTAGGATTGTTTTAAAATGAACCAATACAACTTTCT
TTCACCTTCTGCAGTTTCTTGGAggattcttttaaatttttccgAAGAAA
AACAATGACAAAGTGTGAGCATTTTCGTCAGCCATGTTCGAGTCTTTCAG
TCTTGCGTCATAAGGGGTGGTTTCCACACACGCACCAGTCAAatcgtcaa
aatttttgtcagTCGAAGTCAAATGTAACAGTGCAAAATAAAATACCCCA
AATTAAATGCAATATCAGACAGTATTAAATGCCTTAAGAACTGTTCGGTA
GAGGAAATAAAGTAAATTTGACATGATACAATCCAAGAAGATTGAATCCT
GACAGTCCAACAGGAAGGGTAAATCTCAGGGAACAAATGATCCCACACGA
CACGAGTCATCCTCAGTAAACTGGCAGAGCTTGTCCCTAGAAAGTCATTT
CCCTACTGGTCATGCCTGGAATAAGTTCTTTGAATTCATCAAATTTCTTG
AATTGGCTAATATGTAAAGTTCTTTTTCTAAAAGCGGGAGATCCTAAAGT
CGACGAATAAGCAAAAACTGTTAGCTGATAGAAACCATCCTATCAAAAAC
ATCTGCTTCccctctatttttctttcagacGGGGGTTTGCGAAAACGTTT
CGATCgtgaaaacaaaatggcggccgAAAACgaacaaagaaaatcaagtt
cTATCCCTTTTTTCtatgctgaaaatttgaaaatattgagtTCAATAAAA
CTGTATTTTACTTGTCAAATACAAAAATCACACCACCAGATCCCGTTTAA
TACAAAATTATATTAGGAGTAAGTTCAACGTTCTGAAAAGTCATGAAAAA
AGCTGCAGTAAAGTTGTTTTTGGATgtccttttttgaagtgcttctGGTT
GTTCTTTTCTGCCAGATCTTTCCCTGATTCATTTAGCAGCATTATTATTT
GATACTTACGCTGTTGCAGTTACAAGATTTAATTTGATTGATTACCTATG
TTAGATTTCAGTCAAATTTGTTAAGAATCTAGACATTTTTACCACCTTGC
TTGACATTTGTGTTGAGAAAAGTTCCTGGTGTTTTGGAAACTTTTCAGCC
CTGTACAAGTCCTAAAACGTTCGTGACTAGCTGATTCAATGCTCACACTC
GTCTATGCTTCCTTGAAATCTCGATTTTCATGTTTTGGGAAACTTTATAG
TGGATATTTCCCgttgaaaaatcataaagattctcaattttttcaaaaac
cgtCCATGTCTAAAAAGTTTCAACGTAAACAAGAGAGTGGAATGAAAAAT Run BLAST on NCBI transcript from alignment at sc0000357:311768..313267 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020543 ID=TCONS_00020543|Name=TCONS_00020543|organism=Clytia hemisphaerica|type=transcript|length=1500bp|location=Sequence derived from alignment at sc0000357:311768..313267 (Clytia hemisphaerica)
ATTTTTCATTCCACTCTCTTGTTTACGTTGAAACTTTTTAGACATGGacg
gtttttgaaaaaattgagaatctttatgatttttcaacGGGAAATATCCA
CTATAAAGTTTCCCAAAACATGAAAATCGAGATTTCAAGGAAGCATAGAC
GAGTGTGAGCATTGAATCAGCTAGTCACGAACGTTTTAGGACTTGTACAG
GGCTGAAAAGTTTCCAAAACACCAGGAACTTTTCTCAACACAAATGTCAA
GCAAGGTGGTAAAAATGTCTAGATTCTTAACAAATTTGACTGAAATCTAA
CATAGGTAATCAATCAAATTAAATCTTGTAACTGCAACAGCGTAAGTATC
AAATAATAATGCTGCTAAATGAATCAGGGAAAGATCTGGCAGAAAAGAAC
AACCagaagcacttcaaaaaaggacATCCAAAAACAACTTTACTGCAGCT
TTTTTCATGACTTTTCAGAACGTTGAACTTACTCCTAATATAATTTTGTA
TTAAACGGGATCTGGTGGTGTGATTTTTGTATTTGACAAGTAAAATACAG
TTTTATTGAactcaatattttcaaattttcagcataGAAAAAAGGGATAg
aacttgattttctttgttcGTTTTcggccgccattttgttttcacGATCG
AAACGTTTTCGCAAACCCCCgtctgaaagaaaaatagagggGAAGCAGAT
GTTTTTGATAGGATGGTTTCTATCAGCTAACAGTTTTTGCTTATTCGTCG
ACTTTAGGATCTCCCGCTTTTAGAAAAAGAACTTTACATATTAGCCAATT
CAAGAAATTTGATGAATTCAAAGAACTTATTCCAGGCATGACCAGTAGGG
AAATGACTTTCTAGGGACAAGCTCTGCCAGTTTACTGAGGATGACTCGTG
TCGTGTGGGATCATTTGTTCCCTGAGATTTACCCTTCCTGTTGGACTGTC
AGGATTCAATCTTCTTGGATTGTATCATGTCAAATTTACTTTATTTCCTC
TACCGAACAGTTCTTAAGGCATTTAATACTGTCTGATATTGCATTTAATT
TGGGGTATTTTATTTTGCACTGTTACATTTGACTTCGActgacaaaaatt
ttgacgatTTGACTGGTGCGTGTGTGGAAACCACCCCTTATGACGCAAGA
CTGAAAGACTCGAACATGGCTGACGAAAATGCTCACACTTTGTCATTGTT
TTTCTTcggaaaaatttaaaagaatccTCCAAGAAACTGCAGAAGGTGAA
AGAAAGTTGTATTGGTTCATTTTAAAACAATCCTAgaggaaaatttcatt
ttttttttcaatattggtATGCTTCTTTTAGAATCAGAAATTTTGACTAC
CCCCGTCTTTTGAAATGAATGAgtgattaaaaaatatttcacgcTCTATT
GATTGAAACGAAAACactcatcaaaatttaacaaacCCTCCCTCGTAGTG
CCTTTTTAAAGCTTAGGATGTCTTAGATGttattgtgtttttttatattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020543-exon-sc0000357-1491911889:311768..313267 | TCONS_00020543-exon-sc0000357-1491911889:311768..313267 | Clytia hemisphaerica | exon |
| TCONS_00020543-exon-sc0000357-1510915933:311768..313267 | TCONS_00020543-exon-sc0000357-1510915933:311768..313267 | Clytia hemisphaerica | exon |
| TCONS_00020543-exon-sc0000357-1575043694:311768..313267 | TCONS_00020543-exon-sc0000357-1575043694:311768..313267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000357 | supercontig | sc0000357:311768..313267 . |
Blast
The following BLAST results are available for this feature:
|
