TCONS_00020537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020537
Unique NameTCONS_00020537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020537 ID=TCONS_00020537|Name=TCONS_00020537|organism=Clytia hemisphaerica|type=transcript|length=803bp
GCTTTTTACATGACTGATTAAATGAAAGAAATAGCTCTCGGGAGTGGCGA
TTCTGGGGGTGCAATTATATGAGGGAGGGTGTTGATTTCCTTATATAGAA
TATAGATAAAACTAAAACACCCTCCGTCATATTTTTAGCCTCTGCCACTG
GATCTTTACTTTTTTTACCAACTCATCTTATCACTTAGCAGTGAAGTACT
GTTCCTGGGAAACAACCTTTTAATTGATTTTCCTCTGTTtgaattgaaaa
catttcatctCTCTTTTTTGTTGCATACACCTACCAACGGCAGCTAGTTT
CTGCAAGACATAATTGATGTTTTGGGACAAGATATTGACATTTCTTTAAC
CGCATAAGTTTTGATGACACTTTATTGGTTTTTTGGGTACTttagatttt
tataagaacaatttaatacAGTTACCGATCTTTAAAGGGGAATTTTTAGG
ACTAACGAAATAATGAAATGTTAGCTGGAGTACATGGAAGattagttttc
atttatttattactcagctatttatttatttattcattatggaaaaaatg
ctttcgttttaaatcttcattttacACTAAAGTGCAgatcttaaaaaaaa
ctataCTTTGTACCATAAACACACTTAACGGTACGATCAATgattgaagt
aaaaaatattgatGGTTTTTGCAGGAAATCTTAATCTCCTTAAATCTACT
GTAACTATCCATTTTGTTGCTAGAAGATACCTTGAAAGAGGGAAAAGCCT
AGAAACGAAATAGTTTATACTCCGTTCAGTATTGTTGGGTGTTATGCCAC
CTG
Run BLAST on NCBI

transcript from alignment at sc0000357:216299..217101

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020537 ID=TCONS_00020537|Name=TCONS_00020537|organism=Clytia hemisphaerica|type=transcript|length=803bp|location=Sequence derived from alignment at sc0000357:216299..217101 (Clytia hemisphaerica)
CAGGTGGCATAACACCCAACAATACTGAACGGAGTATAAACTATTTCGTT
TCTAGGCTTTTCCCTCTTTCAAGGTATCTTCTAGCAACAAAATGGATAGT
TACAGTAGATTTAAGGAGATTAAGATTTCCTGCAAAAACCatcaatattt
tttacttcaatcATTGATCGTACCGTTAAGTGTGTTTATGGTACAAAGta
tagttttttttaagatcTGCACTTTAGTgtaaaatgaagatttaaaacga
aagcattttttccataatgaataaataaataaatagctgagtaataaata
aatgaaaactaatCTTCCATGTACTCCAGCTAACATTTCATTATTTCGTT
AGTCCTAAAAATTCCCCTTTAAAGATCGGTAACTgtattaaattgttctt
ataaaaatctaaAGTACCCAAAAAACCAATAAAGTGTCATCAAAACTTAT
GCGGTTAAAGAAATGTCAATATCTTGTCCCAAAACATCAATTATGTCTTG
CAGAAACTAGCTGCCGTTGGTAGGTGTATGCAACAAAAAAGAGagatgaa
atgttttcaattcaAACAGAGGAAAATCAATTAAAAGGTTGTTTCCCAGG
AACAGTACTTCACTGCTAAGTGATAAGATGAGTTGGTAAAAAAAGTAAAG
ATCCAGTGGCAGAGGCTAAAAATATGACGGAGGGTGTTTTAGTTTTATCT
ATATTCTATATAAGGAAATCAACACCCTCCCTCATATAATTGCACCCCCA
GAATCGCCACTCCCGAGAGCTATTTCTTTCATTTAATCAGTCATGTAAAA
AGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011528XLOC_011528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020537-exon-sc0000357-1491911889:216299..217101TCONS_00020537-exon-sc0000357-1491911889:216299..217101Clytia hemisphaericaexon
TCONS_00020537-exon-sc0000357-1510915933:216299..217101TCONS_00020537-exon-sc0000357-1510915933:216299..217101Clytia hemisphaericaexon
TCONS_00020537-exon-sc0000357-1575043694:216299..217101TCONS_00020537-exon-sc0000357-1575043694:216299..217101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:216299..217101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.174729	0.0676258	0.132323	0	0	0	0	0	0	0	0.0795555	0	0.0412522	0.0339149	0	0	0	0.063491	0.0664387	0.0577473	0.253504	0	0.124519	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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