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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020530 ID=TCONS_00020530|Name=TCONS_00020530|organism=Clytia hemisphaerica|type=transcript|length=1198bp
AAGATTTCGTCAACTATCACCTCCTTGTGTTTAGATTTGATGATGGACGC
CACAGAGTAGCGAGTAAACAAATCGATAATATGAAAAACAATGTACTTTT
TATCGTTAATTGTGATGAACTTtaaatccattgcaaggcaaCCATTAAAT
TCTTTGGAAAGCGATCACGATACAACAGGTCTGGCTCTGGCTTTTCGGTA
ACGGGTACAAACGTCACAATCCTCTGTAACTTGATCGATAAGTCCCAATA
ACTCGTCATCTTTGACTTCTGCATCTTTTGTAATAGTTTTCAGTTTTGCG
GAATCAACAGGATGTCCAAACTGTTTATGCAGCTTAACAGCAATAGACTT
TTTCTCCTCTTTCGACTTtgtgtttttaaatcatttatTGTAAGATATAA
CTCAATTGGTGCTTCAGGTGCGATATTACGATTGACAAGAATCTGCTTTG
GCGAAATAGGAATACAATGTCCGCTTGAAGTGTGTTGAAGTTTTATCTCT
GTACCGAAAAGAGTTATCGTCTCTTTAACAAAATCAAGTTGTCCACCGGC
TTCCTTTATACTATGCTTGGAAAGTAAGAGAGGTACCTCACAGTCGACTA
CATCTGTAAGGATATGCCCTGGTTTTCCACCGATGTTAATAGGAATGTTT
ACTTTCTTCAATGGTTGATAAACTTGACTAGGACTGAATTGATACGACTT
CTTACTTTTTGTTTCTGTTACGTCTTCGCGATTTGGTAACGAATCGAGAT
GGCAATTTAACCAATTCTTTCCGCATACATTTGAAGGGCACCCTGGATCA
ATAACTGCACAACTTAATGTTTCTGATACCATCTGCTCAAGAAAACATAA
CTCGACTCCACTTTCTTGCGTAAGTAACTGGATTTTCAAATGTTGTAATG
ATAGGTCCTTTTTATCTGTATCCGGACAGTCACGGTAGTAATGATAGATT
GAACCACAAATTTTACAACGAGTATGGTTACCATTTTCATCTGGACAGTT
TCTATAACGAGTTGATGACTGTGCTTGAGGAGCGCGATGTCCTCTTGACG
GGATCCTCGATAGTTAGCTCCTCCACGTCCACGATATCGATTAACTCGAA
AATTTCGTCCTCGATTAGCAGAATAATTTTTACGAGAATAATATGCTTGT
TCATTTTCCACTAAAATATCTGATGTATCTTCAGTCGTTTTATCATCA Run BLAST on NCBI protein sequence of TCONS_00020530-protein >TCONS_00020530-protein ID=TCONS_00020530-protein|Name=TCONS_00020530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MVSETLSCAVIDPGCPSNVCGKNWLNCHLDSLPNREDVTETKSKKSYQFS
PSQVYQPLKKVNIPINIGGKPGHILTDVVDCEVPLLLSKHSIKEAGGQLD
FVKETITLFGTEIKLQHTSSGHCIPISPKQILVNRNIAPEAPIELYLTIN
DLKTQSRKRRKSLLLLSCINSLDILLIPQN Run BLAST on NCBI transcript from alignment at sc0000357:147913..149110 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020530 ID=TCONS_00020530|Name=TCONS_00020530|organism=Clytia hemisphaerica|type=transcript|length=1198bp|location=Sequence derived from alignment at sc0000357:147913..149110 (Clytia hemisphaerica)
TGATGATAAAACGACTGAAGATACATCAGATATTTTAGTGGAAAATGAAC
AAGCATATTATTCTCGTAAAAATTATTCTGCTAATCGAGGACGAAATTTT
CGAGTTAATCGATATCGTGGACGTGGAGGAGCTAACTATCGAGGATCCCG
TCAAGAGGACATCGCGCTCCTCAAGCACAGTCATCAACTCGTTATAGAAA
CTGTCCAGATGAAAATGGTAACCATACTCGTTGTAAAATTTGTGGTTCAA
TCTATCATTACTACCGTGACTGTCCGGATACAGATAAAAAGGACCTATCA
TTACAACATTTGAAAATCCAGTTACTTACGCAAGAAAGTGGAGTCGAGTT
ATGTTTTCTTGAGCAGATGGTATCAGAAACATTAAGTTGTGCAGTTATTG
ATCCAGGGTGCCCTTCAAATGTATGCGGAAAGAATTGGTTAAATTGCCAT
CTCGATTCGTTACCAAATCGCGAAGACGTAACAGAAACAAAAAGTAAGAA
GTCGTATCAATTCAGTCCTAGTCAAGTTTATCAACCATTGAAGAAAGTAA
ACATTCCTATTAACATCGGTGGAAAACCAGGGCATATCCTTACAGATGTA
GTCGACTGTGAGGTACCTCTCTTACTTTCCAAGCATAGTATAAAGGAAGC
CGGTGGACAACTTGATTTTGTTAAAGAGACGATAACTCTTTTCGGTACAG
AGATAAAACTTCAACACACTTCAAGCGGACATTGTATTCCTATTTCGCCA
AAGCAGATTCTTGTCAATCGTAATATCGCACCTGAAGCACCAATTGAGTT
ATATCTTACAataaatgatttaaaaacacaAAGTCGAAAGAGGAGAAAAA
GTCTATTGCTGTTAAGCTGCATAAACAGTTTGGACATCCTGTTGATTCCG
CAAAACTGAAAACTATTACAAAAGATGCAGAAGTCAAAGATGACGAGTTA
TTGGGACTTATCGATCAAGTTACAGAGGATTGTGACGTTTGTACCCGTTA
CCGAAAAGCCAGAGCCAGACCTGTTGTATCGTGATCGCTTTCCAAAGAAT
TTAATGGttgccttgcaatggatttaAAGTTCATCACAATTAACGATAAA
AAGTACATTGTTTTTCATATTATCGATTTGTTTACTCGCTACTCTGTGGC
GTCCATCATCAAATCTAAACACAAGGAGGTGATAGTTGACGAAATCTT Coding sequence (CDS) from alignment at sc0000357:147913..149110 >TCONS_00020530 ID=TCONS_00020530|Name=TCONS_00020530|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000357:147913..149110 (Clytia hemisphaerica)
ATGGTATCAGAAACATTAAGTTGTGCAGTTATTGATCCAGGGTGCCCTTC
AAATGTATGCGGAAAGAATTGGTTAAATTGCCATCTCGATTCGTTACCAA
ATCGCGAAGACGTAACAGAAACAAAAAGTAAGAAGTCGTATCAATTCAGT
CCTAGTCAAGTTTATCAACCATTGAAGAAAGTAAACATTCCTATTAACAT
CGGTGGAAAACCAGGGCATATCCTTACAGATGTAGTCGACTGTGAGGTAC
CTCTCTTACTTTCCAAGCATAGTATAAAGGAAGCCGGTGGACAACTTGAT
TTTGTTAAAGAGACGATAACTCTTTTCGGTACAGAGATAAAACTTCAACA
CACTTCAAGCGGACATTGTATTCCTATTTCGCCAAAGCAGATTCTTGTCA
ATCGTAATATCGCACCTGAAGCACCAATTGAGTTATATCTTACAataaat
gatttaaaaacacaAAGTCGAAAGAGGAGAAAAAGTCTATTGCTGTTAAG
CTGCATAAACAGTTTGGACATCCTGTTGATTCCGCAAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020530-exon-sc0000357-1491911889:147913..149110 | TCONS_00020530-exon-sc0000357-1491911889:147913..149110 | Clytia hemisphaerica | exon |
| TCONS_00020530-exon-sc0000357-1510915933:147913..149110 | TCONS_00020530-exon-sc0000357-1510915933:147913..149110 | Clytia hemisphaerica | exon |
| TCONS_00020530-exon-sc0000357-1575043694:147913..149110 | TCONS_00020530-exon-sc0000357-1575043694:147913..149110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000357 | supercontig | sc0000357:147913..149110 . |
Blast
The following BLAST results are available for this feature:
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