TCONS_00020514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020514
Unique NameTCONS_00020514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020514 ID=TCONS_00020514|Name=TCONS_00020514|organism=Clytia hemisphaerica|type=transcript|length=2030bp
TTCATTTAGGTTACTAAATAAAAATGGCTAAGCAAGGCTGTGTGACGGTC
AGTTGTGTCAAAACATGGTTCCTTGTATTTACAGCTGTTTTGCTGTTATT
TGCCATTGGAATCTTTGGCTTTGGTGTTTGGTTTTTGGTGACGCAGAACC
ACTATGAGCCCATTCTTGGTAGTATGACTTACATTACAACTCTGGGTTTG
ATGTTGGCTGCAGGTCTCTTTTCAATGTTTGTCTGTATCTTTGGTATCAT
TGGTGCAGTACGTGAAAGCAGGTTCATGGTTCTCGGATTCTTTCTGATGA
TtatcattgtttgtttgttggAGATTGTTGGTGGAATCCTTGCTTATGTT
TACCGGAAAGATGTCCAGGAAGAGATCACACGTAATCTGAACATTGAAAT
GGTTTCAAATTACGGAAAACCAGGGAATGAGAAGAAGACAGATGCCATCG
ACATGCtacaaaaatcaTATCAATGCTGTGGGGACGCCGACTACCAAGTA
TGGAAACGAACTGAATGGCACAAACAGGATCCTCCCAAAACCAAACCCAA
TGTACCGGATGACCAACAAATGAAAGTTCCGGATTCTTGTTGTATTACAG
CGGATCAGAAGGATTGCGGACATCGCATACATCCGTCGAATATTTGGAGG
AATGATCTTAAGCCCATTGGTTGTATTCCGCAGTTGATTGGATTCTTGGA
GAACCATCTCATTAAAATTGGAATCGCTTGTCTTGTCTCTGGTCTGGCTC
AGattatCTGTATCGTTCTTTCCATGTGGCTGTACCGTTTGATCGTCGAG
TTCCGTTAAACGGAAATACCAAAAACCTGGAAAAGATCACGAGTCCACGA
CATCATGGTAGTTTACAAGTTTCgatgaaatttttgaatgaTAATGAAAG
TATTTGGTGAAGAATAGCTTGAATGAAATCATAAAGGAAAGTGTAGATTC
AAAGTTTAATGAGAAAACTAGCTTTGGAACACTTTAGAATATTCTATCTA
CAGATTTTAATAGATGAATATACATATCTGTCAAAAGACAGTTTATTATA
TTTATGTAGTTGCATATAGaggaacaaaatatttttaatgtgaCACAAAT
TTTAAAAGAGAATCTTGTTCCGCCATTCAAGGAAGACCATTTTGCATTTT
GTAGGATTTAGTCATAGTTTTGAAAccctttttcatttgttttatttgtt
cattttttaagatatttttttctctttttattggCTCCTAAGCTTGTGGT
TCTTTCCGTCGTAATTGCACTAGGAGACTTCCGAGTTGCTAGGCTATATA
AAATCTCGTCTATTGGAACACCCAGTCCCCATGTCTACCTTTGAAAAAAG
CCACTGGAAGCTTTAAATAACTATAGCCTTTTtatatcttttaatttttt
atattagtaatttttgttttttagaattttttctccATCTTCCCCTTTTT
TAGATTGTACTATCAGTAGAGACGAGCTCCTTTTAGACTTTTTACTGAGA
GATTTTAGAGATGGAAAATGTCTTCCCCTTTTCGAAGGCCAGCTTCCTTT
CTCGAGTACTTTTGGCTGTATATAAAGTGAAGCaatgaatattttctttt
tcactgaGGAAGATTTATTCATTTATCTGAAGAAGGCTGGTGAAAATCAA
ATAGGAAAATTACTTCCCAGAATCAAGGTTAGTTGTGTcgttttttaatg
atttctcTGATCTGATCTTCTAATTTGAAAAGTGCTTTGTTTCTAAATTG
CCCTAGAATACACCCTtattattttaagaatttttttatctcaaaGATTT
TATTGGTTTTTGTATAATAATACCCAATACTCtttatttgtttacttttt
tatttatttgtttttatctctgtttttttatttacttcacTTTTTGTtgc
ttaattttttgttgtttttgaattttgaaaatgtttaacaaATTTATTAT
AGTAAGCAGTTAGTGAAtaccaaaaatatattttccatcttctttcaaat
tttcacagtctCTGTTATGATTGATTGGTA
Run BLAST on NCBI

transcript from alignment at sc0000357:39484..47828-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020514 ID=TCONS_00020514|Name=TCONS_00020514|organism=Clytia hemisphaerica|type=transcript|length=8345bp|location=Sequence derived from alignment at sc0000357:39484..47828- (Clytia hemisphaerica)
TTCATTTAGGTTACTAAATAAAAATGGCTAAGCAAGGCTGTGTGACGGTC
AGTTGTGTCAAAACATGGTTCCTTGTATTTACAGCTGTTTTGCTGGTAAG
AAAATAAGACTTGGCTATATAATTCAACTCTTCTCAAACAATTTCAGTTT
GTATATAAGGCAGAAAGGGGAGCTTGCATCAGCCTACACAGGATATTTCC
TGGTGTCTATCATAATGTAAATAAAGTCTGGTATACACAGGGACTAGGTT
GTTGTCGGTTATTGCCGTACTAGAAATTGTCAGACTTCTGTCGCCATTGA
GTAAAGGGCTACTTATAGCAATATACTGACGGACAATTTTCTTTCTGTTA
ACAATCTCGCTATATTGTTGGAATATTGCAAATGGAGCTGATAATATATA
GTGAACATCTTTTTAATGTATTGCCGGCAATCAGCAATATATTGTCAATA
TATTGCGTGACAATGTATTGTGTAGTGTATGTAGCCCTTAACGTTTTATG
TATTTTATCATAGTTATTTGCCATTGGAATCTTTGGCTTTGGTGTTTGGT
TTTTGGTGACGCAGAACCACTATGAGCCCATTCTTGGTAGTATGACTTAC
ATTACAACTCTGGGTTTGATGTTGGCTGCAGGTCTCTTTTCAATGTTTGT
CTGTATCTTTGGTATCATTGGTGCAGTACGTGAAAGCAGGTTCATGGTTC
TCGGAGTAAGTGTCATCAAAATATTATTTTTTGAAAACTTCCTTTGGAAA
TGAAAACTCTTATTTCTGGGTTTAAAATTACTTTTGAAATCACACACTAC
TTTAATGGAGAGCCATTTGCTTAAGGCTGGTCTCCACTTGCGCACGCTTC
GATCGCACTTTTTCTAGCAAAGCTTCCACACTATTGGTCAAAAGAAAAAT
GAAGCAACTCCATTGGCGCGATCTGACGTAACGGTTGAAAAAAGTTGAAA
TGTTCAACTTTTTTTTCAAGCGCGGGTGCTACATTTTTATGACGTAATCT
TTTTTCCAAACAAAAAGGATTGAAGCCAAAAAGTGCGATTGCAGCGCGCG
CAAGTGGAGACCGGCCTTTAGGCTTTTCGAATGAAATTTTCAATAAAATG
AATCATAATATTGATTGATGACATAATCTCTTTCTTCAGTTCTTTCTGAT
GATTATCATTGTTTGTTTGTTGGAGATTGTTGGTGGAATCCTTGCTTATG
TTTACCGGAAAGATGTAAGTTTCGGCTCCCCAACATGTTAAAAACTCTGT
ACATTTGAAATTCATCAATTCAACTTTTGCTAAATAATTACTGTTAATTG
CTTATTCGTTATTAAAAAGAGCACTGCATTATGATAAATCTTTATTTTGA
AAATAGCTAGCCATCACTATGGCTTTTCACTTTTCGACTTTTTTTGTATA
TCATTTTTAACTTTTGCAAATATTCTAACAAAAATTACACTTTTCTCGTA
CTTTTGTTCTTCAGGTCCAGGAAGAGATCACACGTAATCTGAACATTGAA
ATGGTTTCAAATTACGGAAAACCAGGGAATGAGAAGAAGACAGATGCCAT
CGACATGCTACAAAAATCAGTTAGTAAATATATTTTGATCATAAGAGCTA
CTTAGACTACACAATATATTGACAAACAATATTCAACAATATGGTTTGCG
GTACTCGATTATAAAAGGGAATTTTCTTTCTGTAAACAATATATATTGCA
AATGGAGCTGACAATATATTGCGAACATCTTTTCAATGTATTGCCGAAAT
TCAGCAATATATTAAGATACTAAGTTTTCTAAAAGCTTTTATCTAAGATT
GATTGTTTAAGCTTTTTAATATTAAAGGGCTTTTACAATAACCTGGCTAA
TATAATAATATCTGGCTGTTTTTGTAAGGTTCTAAACCAAAGATTTCTCC
CTAAAAACTTACATGGAACTTTACTTTGCGACCTAAAGGCTGAAGGTGCC
TGTCAAACTACAACTGTTTTCAAATTGATTTTGATGTGCACACTGATTTT
AGACTGCAGGTAAAAAAAGGAAATGTTAGTGGGATGGAGCCAATCATTGA
AATTAAAGCCCTGAAGATGTAAAAAAGATATTTCAAAAAAATACTTGACC
ACACCCAAACCACTAGATTCAATCCATCATCATAGTTGTATGTGGCGAAG
GTTTCACATACTTTTGCCTGTGAAACTGAGCTCTTTGGAATACTGCCCTA
TCAATGGATATTGTTTTTAGTAACAAGCTGACATTGGATAGATCCTTTAG
TTGTGCTAAGTATCATGCGTGAGTGTTGAACTAATAAAATAACAATTTGT
ATTGTTTATCTCCATAGTATCAATGCTGTGGGGACGCCGACTACCAAGTA
TGGAAACGAACTGAATGGCACAAACAGGATCCTCCCAAAACCAAACCCAA
TGTACCGGATGACCAACAAATGAAAGTTCCGGATTCTTGTTGTATTACAG
CGGATCAGAAGGATTGCGGACATCGCATACATCCGTCGAATATTTGGAGG
AATGATCTTAAGGTATCATCAAGGTCTTCTATATATTAATAGTGGTAGTC
TGTATGTCGTTTTGTCTTTCTTTCTGTCTGTGCTACTTTCGTTTTCGTAC
GCAATGTTTTTGTTCTTTTAAAAGATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTGCCTGTTTTCGACGAATCT
CGCGTGGCATGTCTATTATTTCAGTCCGCGTATCTTGACATCAAAGTTTT
CCTAAACATCAAGAACTACGGCAAATATATCACGAGCGAAGCGAGAAAAA
AAATCTAATTCCAGAGCCGTCACGGACGTCGCTGGTCGCCGGTATGGTGT
AATTTGGGAATGACGCCATTTCTGCTTTTAGATCATTTTTGCCACAAAAA
TCTTTTTCAAAATATGGTTAAAAGATACGTCACCCGGGAGGGATAGAGTC
AAACTTTGANGTCGCTGGTCGCCGGTATGGTGTAATTTGGGAATGACGTC
CTTTCTGTTTTCTGATCATTTTTGCCACAAAAATCTTTTTCAAAATATGG
TTAAAAGATACTACACCCGGGAGGGATAGAGTCAAACTTTGAAGAGAATT
CTTCCCTTAAATTTTGATTTCATCGTGTTTAAGCCACCTTCCCAACTTCC
AAAGGACTTTAAATGCGTTCAGCAAACAGCTAAACCGGCGTGCGACGCCG
GGTACCGGCTAGTTTTTATTATTAGTTTAACAAGTTTTTTATTCGCGATA
AGAAAGTCTGCACCATTGAGTTTAAATCCGAAAGTCCTATAAAAGAAAAT
TTGTCAAGCAAGAAAAATTGAAGCCTAAAGCTTTGCGCTGCTTTTAGAGG
TGCAGTAGTGTAGTGGTCATCGTTCTTGACTTCCGTGCTGGAGGTCAGGG
TTCGATTCCCACTCGGTGCTGCGATTCACTTGGCAAGTGAATGTACCTTG
GCCTCGGTCAACCCATACCATGTGAGGGGAATATGGTACCATCACTCTGA
TACAAGAGTATGGGGAGATATGCTGGGCATTGAATGTGGTGTAGTGATGG
TACTCATATGTTCAGTACCTGCGAGAACGCAAGGTTTTCCCGTACAGTGC
GAGTATCATCGATACAGCACGGCTCTGATGTGTCGCGAGCACAGAGTAAA
ATGTCTGGTAAGCGCTGTGATTTCCCTATCTAGGGGTAGGAAAATATCCC
GGGATAGGGCCCGGTCCGATGATATCGGAGGGTCGGCTTCTCTCTCTCTC
TATCTTATCGTACTGTTGCTTTCTGTAGCCCATTGGTTGTATCCCGCAGT
TGATTGGATTCTTGGAGAACCATCTCATTAAAATTGGAATCGCTTGTCTT
GTCTCTGGTCTGNTGTAGCCCATTGGTTGTATTCCGCAGTTGATTGGATT
CTTGGAGAACCATCTCATTAAAATTGGAATCGCTTGTCTTGTCTCTGGTC
TGGCTCAGGTAAGTTGAAAACTTTCTCAGAAATTAGCTTCTAAGAGCAAA
GAGCTATTAACCATCATATCAGAACGTTTAAATGATACCTTTAAACATTT
TAATAGTAGCCAACCATTTCGAAAACAAAAGCTTTTACTGCACGAGAACG
AAAATCAAGATTACAGAAACGCCATTGGCGTTTTATTACTTGAACTAGAG
ACATAAGTGAAACTTTCTATTCATGATATATACCGGGTGCGCCACAAAAA
AGTTTCTCTCTTTGAAACTAATTTTCTCGAAATCTAAAAATTTTAAAAGA
ACCATTCCTTTTTCATTGAAAAGAAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAAGGTCATTTAGACAGCTAATTATAATTTTTAATGACTGAAACG
AAAATACTGATGTATCATGTAATTATGCTTCTGTTTGATTTGATAGGTCG
ACTTTAAACATTTTCGGGCAGTTTCTGAAAGTAACTTTTCTATTCAATTG
AGCATAACTTTTGATCTAATAGATCAAATTTAATAAATAACCCATCAAAA
TTTAAGTCTATCTTTCTTCTTTCCAATCAAATAGGAATTGGTTCTTTTAA
ATTTTTTAGATTTCGAGAGAATTAGTTTCAAAGAGAGAAACTTTTTTGTG
GCGCACCCGGTATGACGTAATGTTTTCTACGGAAACAATCCGGTTTTTTT
TAATTTTAAACATTTTTTCTGTAACTCAAATCTTTCAAATTTGCCACTGC
TGGCAAAAACCGGGATGTTTCAGTGGAAAATATTACGTCATGAATATCGT
CATGAAGTGTGTAAACTTTGGAGATCTTTTTCTTCAAAATATCTTGATGA
TTGTTTTCTTTTTTCAGATTATCTGTATCGTTCTTTCCATGTGGCTGTAC
CGTTTGATCGTCGAGTTCCGTTAAACGGAAATACCAAAAACCTGGAAAAG
ATCACGAGTCCACGACATCATGGTAGTTTACAAGTTTCGATGAAATTTTT
GAATGATAATGAAAGTATTTGGTGAAGAATAGCTTGAATGAAATCATAAA
GGAAAGTGTAGATTCAAAGTTTAATGAGAAAACTAGCTTTGGAACACTTT
AGAATATTCTATCTACAGATTTTAATAGATGAATATACATATCTGTCAAA
AGACAGTTTATTATATTTATGTAGTTGCATATAGAGGAACAAAATATTTT
TAATGTGACACAAATTTTAAAAGAGAATCTTGTTCCGCCATTCAAGGAAG
ACCATTTTGCATTTTGTAGGATTTAGTCATAGTTTTGAAACCCTTTTTCA
TTTGTTTTATTTGTTCATTTTTTAAGATATTTTTTTCTCTTTTTATTGGC
TCCTAAGCTTGTGGTTCTTTCCGTCGTAATTGCACTAGGAGACTTCCGAG
TTGCTAGGCTATATAAAATCTCGTCTATTGGAACACCCAGTCCCCATGTC
TACCTTTGAAAAAAGCCACTGGAAGCTTTAAATAACTATAGCCTTTTTAT
ATCTTTTAATTTTTTATATTAGTAATTTTTGTTTTTTAGAATTTTTTCTC
CATCTTCCCCTTTTTTAGATTGTACTATCAGTAGAGACGAGCTCCTTTTA
GACTTTTTACTGAGAGATTTTAGAGATGGAAAATGTCTTCCCCTTTTCGA
AGGCCAGCTTCCTTTCTCGAGTACTTTTGGCTGTATATAAAGTGAAGCAA
TGAATATTTTCTTTTTCACTGAGGAAGATTTATTCATTTATCTGAAGAAG
GCTGGTGAAAATCAAATAGGAAAATTACTTCCCAGAATCAAGGTTAGTTG
TGTCGTTTTTTAATGATTTCTCTGATCTGATCTTCTAATTTGAAAAGTGC
TTTGTTTCTAAATTGCCCTAGAATACACCCTTATTATTTTAAGAATTTTT
TTATCTCAAAGATTTTATTGGTTTTTGTATAATAATACCCAATACTCTTT
ATTTGTTTACTTTTTTATTTATTTGTTTTTATCTCTGTTTTTTTATTTAC
TTCACTTTTTGTTGCTTAATTTTTTGTTGTTTTTGAATTTTGAAAATGTT
TAACAAATTTATTATAGTAAGCAGTTAGTGAATACCAAAAATATATTTTC
CATCTTCTTTCAAATTTTCACAGTCTCTGTTATGATTGATTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011512XLOC_011512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020514-exon-sc0000357-1575043694:47734..47828TCONS_00020514-exon-sc0000357-1575043694:47734..47828Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1575043694:47124..47315TCONS_00020514-exon-sc0000357-1575043694:47124..47315Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1575043694:46615..46689TCONS_00020514-exon-sc0000357-1575043694:46615..46689Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1575043694:46260..46364TCONS_00020514-exon-sc0000357-1575043694:46260..46364Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1575043694:45317..45511TCONS_00020514-exon-sc0000357-1575043694:45317..45511Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1575043694:43221..43310TCONS_00020514-exon-sc0000357-1575043694:43221..43310Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1575043694:39484..40761TCONS_00020514-exon-sc0000357-1575043694:39484..40761Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:47734..47828TCONS_00020514-exon-sc0000357-1510915933:47734..47828Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:47124..47315TCONS_00020514-exon-sc0000357-1510915933:47124..47315Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:46615..46689TCONS_00020514-exon-sc0000357-1510915933:46615..46689Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:46260..46364TCONS_00020514-exon-sc0000357-1510915933:46260..46364Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:45317..45511TCONS_00020514-exon-sc0000357-1510915933:45317..45511Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:43221..43310TCONS_00020514-exon-sc0000357-1510915933:43221..43310Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1510915933:39484..40761TCONS_00020514-exon-sc0000357-1510915933:39484..40761Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:47734..47828TCONS_00020514-exon-sc0000357-1491911889:47734..47828Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:47124..47315TCONS_00020514-exon-sc0000357-1491911889:47124..47315Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:46615..46689TCONS_00020514-exon-sc0000357-1491911889:46615..46689Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:46260..46364TCONS_00020514-exon-sc0000357-1491911889:46260..46364Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:45317..45511TCONS_00020514-exon-sc0000357-1491911889:45317..45511Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:43221..43310TCONS_00020514-exon-sc0000357-1491911889:43221..43310Clytia hemisphaericaexon
TCONS_00020514-exon-sc0000357-1491911889:39484..40761TCONS_00020514-exon-sc0000357-1491911889:39484..40761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:39484..47828 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.94142	1.25294	22.7408	23.2141	31.8104	37.4439	30.1451	28.0127	48.7479	46.5907	26.3903	30.2563	40.4192	45.5948	36.1019	28.4798	39.5368	37.5953	21.1667	20.6653	14.3969	17.5972	29.9675	23.6282	36.2112	40.1046
Blast
[Close]
BLAST of TCONS_00020514 vs. Swiss-Prot (Human)
Match: TSN11 (Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 5.223e-32
Identity = 68/225 (30.22%), Postives = 124/225 (55.11%), Query Frame = 3 
Query:  108 GIFGFGVWFLVTQNHYEPILGSMTYITTLGLMLAAGLFSMFVCIFGIIGAVRESRFMVLGFFLMIIIVCLLEIVGGILAYVYRKDVQEEITRNLNIEMVSNYGKPGNEKKTDAIDMLQKSYQCCGDADYQVWKRTEWHKQDPPKTKPNVPDDQQMKVPDSCCITADQKDCGHRIHPSNIWRNDLKPIGCIPQLIGFLENHL-----IKIGIACL-VSGLAQIICI 764
             +   G+W LV ++ Y  +L S T+  +  +++ AG+  M     G    + E +  +  +F +++++ L+E+V G+LA+VY + + +E+ ++LN  +  NYG+PG  + T ++D LQ+ ++CCG      W+ +         T   + + +  +VPDSCC T   + CG R HPSNI++ +    GC+ +L  FL +HL     + IG+ACL + G+    C+
Sbjct:   33 AVLAVGIWTLVEKSGYLSVLASSTFAASAYILIFAGVLVMVTGFLGFGAILWERKGCLSTYFCLLLVIFLVELVAGVLAHVYYQRLSDELKQHLNRTLAENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHS---------TYILLREAEGRQVPDSCCKTVVVR-CGQRAHPSNIYKVE---GGCLTKLEQFLADHLLLMGAVGIGVACLQICGMVLTCCL 244
The following BLAST results are available for this feature:
BLAST of TCONS_00020514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN115.223e-3230.22Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=... [more]
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