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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020504 ID=TCONS_00020504|Name=TCONS_00020504|organism=Clytia hemisphaerica|type=transcript|length=2152bpRun BLAST on NCBI transcript from alignment at sc0000357:279073..288545+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020504 ID=TCONS_00020504|Name=TCONS_00020504|organism=Clytia hemisphaerica|type=transcript|length=9473bp|location=Sequence derived from alignment at sc0000357:279073..288545+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020504 vs. Swiss-Prot (Human)
Match: ODFP2 (Outer dense fiber protein 2 OS=Homo sapiens GN=ODF2 PE=1 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 5.233e-78 Identity = 209/630 (33.17%), Postives = 347/630 (55.08%), Query Frame = 3
Query: 3 KFTEVDIKALSSQRDMLLDKLDEFDVTNKNLRRLIKEAHKKQVSEDELTDRCNILIKKLTNAESTIQVNLDLCDPNILIKKLTNAESTIQNQSAQLVDQDKQIDTLIAKIETDKQQGKIYDDLQKTMEATREHLQTELTQKSVECERLQQAFEKSQRDSSACTAEVEHYQSVLAVTRDKSVRDKEALKKATRIQRERADKSEDSNEKLQKQMSDLLIELDHSKRTLIDLTDAHKKLKKDNEYLEDESKILRKNIFDIGDTLELSPKTMKAGPVPVVEKLTSKVRQLKCVKTENERLKEEIRSIEENFHSTDQDYTFKLRTAETEITKLRAALDQFETLATEYKSQLDHYRNECNDLHNRLRQQDEQMNSKLKESMH-EVNDVRTSLRSKILELEPYPAMLKASEDRLRETQERANTAEKKNTEQNIVIVELTQKVEMLTEQMDHLREKYRSKHDESKHLEQQITAMERQMQSVDGSQRELIQSLSRKDENLAVLQERFESQRIENXDRTPNDKYFIV*ERFESQRIENERLVHQLEVALNDAKKQVETQKDKAVAKERSAQARIMDLEAQLSRSTQNTQQLKRTKDEAERKFNSRLQDMRDRLEQANSTTRSMQNYVQFLKSTYANVFTD 1889
+ T DI L+ Q+++LL KL F+ TN+ LR L++E H K+ SE L ++ L+K+L A+S A + Q D+DK+++ L+ +I+ +K Q K +L K+ME+ R HLQ +L K E RL + +R + AEVE L + K RDKE+LKKA R Q+ERA+KSE+ E+L Q++D + + + TL + ++ K+ LE E +L + D+ + + + M+ +VE+L + + K ENERLK +E+ KL A E+ +L+A++ +E + YKSQ+ R E +++ +L + D++ N LK+ M+ E+ R +S++ +L+ P +LK +E +L E Q++ E+KN + +I +L ++E ++++ REK+++ E+K L ++ +ER++++ E +Q +++++E A+ Q + R E + E L QLE A+ DA++QVE K+ A++KER+AQ +I+DLE QLSR+ QL+R++D+A+R++ SRLQD++DRLEQ+ ST RSMQNYVQFLKS+YANVF D
Sbjct: 240 QMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSE-RLMEQQGALLKRLAEADSE------------------KARLLLLLQ-----DKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMED-----------KLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKE-NKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREE--AIHQSQL---------------------RLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGD 810 The following BLAST results are available for this feature:
BLAST of TCONS_00020504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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