TCONS_00020468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020468
Unique NameTCONS_00020468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020468 ID=TCONS_00020468|Name=TCONS_00020468|organism=Clytia hemisphaerica|type=transcript|length=880bp
TTTAAAGAACTTTTATATGAATAGCAAACTGCATTGGAAAAGCAGTATAG
ATATTAGGGGACATAAAAAGGTCtagaaataaagtaaaaatgaaTATTCA
ACTTGTGTataatttgatcattttgatGGTTCTGAGGAACACCAGAGCTA
AAGTAGAAGAACACAAGATTTCAGATGAAGAACATTTTCACAAGGATGGG
AAGCATGACACATCATATGACCATGATGCGTTCTTAGGGAAAGGGCATGG
ACACGACTTTGATGGTCTAGAACCGCAAGAAGCCAAACGAAGATTGAGAG
AAATGCTTAAAAAGGTTGACACGGACAAAGATGGATTCATTTCATTCGAA
GAACTTCGTGATTGGGTGGATAAACAAAGGATATCGTACATGTGGGAGAC
ACTGGATACAAACATTCGACAAAATGATGATGACCATGATGGCTTGATCA
CGTGGATCGAATATAAACATTCTCAATTTGGAAAATGGGAAGACGCAGAG
ACGGAGATAGATGCTAAATTACAAGCACGTATTAACAAATCAGAGAACAA
ATTCAAACTCGCTGATACAAATGGTGACGGCAAATTAAGTCGCGACGAAT
TCGCATTTTTCCGACATCCTGAAGAGAGTCGAGATGAGAAATTACAAGAC
GTTGCTGTCGATGAGGTCATTGATGATATGGACCAAAATGGTGACCGgaa
aattgaTCAAGAAGAATTTTTGGGTCAATACGTGGACGATGCAAATAATC
CCCCTGATTGGGTCCTCGAAGATAGAAAACATTTCCGTGACAAGCTAGAC
AAAAACAAGAACGGAATGTTGGAGCGAGAAGAAATGAAAGCCTGGGTACT
ACCCAATCGTGATGACACATTGAAAGAAAC
Run BLAST on NCBI

transcript from alignment at sc0000357:130843..135142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020468 ID=TCONS_00020468|Name=TCONS_00020468|organism=Clytia hemisphaerica|type=transcript|length=4300bp|location=Sequence derived from alignment at sc0000357:130843..135142+ (Clytia hemisphaerica)
TTTAAAGAACTTTTATATGAATAGCAAACTGCATTGGAAAAGCAGTATAG
ATATTAGGGGACATAAAAAGGTCtagaaataaagtaaaaatgaaTATTCA
ACTTGTGTataatttgatcattttgatGGTTCTGAGGAACACCAGAGCTA
AAGTAGAAGAACACAAGATTTCAGATGAAGAACATTTTCACAAGGATGGG
AAGCATGACACATCATATGACCATGATGCGTTCTTAGGGAAAGGGCATGG
ACACGACTTTGATGGTCTAGAACCGCAAGAAGCCAAACGAAGATTGAGAG
AAATGCTTAAAAAGGTAAGGAGAGTATAGAGATTACATAGatcagcaaaa
tttcatagTGATAATCCAAAGAAGTGACAAGCTGACGTTATATAGATGTT
ATGAATGTTAAATTGCTGAAACTCTACACTCATGCATCACACTTAAAACA
GGTCTAAAAATCAGTTCTGAAGCAGATTTTAACCTTTCAAATTTAGTGAA
ATAGTCATCAGGTGTATTATTTTTCTGGCTAAACAAAGCCCTAATGCCAA
AACATATTCGACTAACAAAGCATTTATGAACTTTCCAACAGTTaccaaaa
atgattttgtcCGTCTTTGAAGATACTAAAATGCAGGAGAACGACGTCAA
CAGAGATCGTCTTGACcttgaaatgaatgaaaatggcTGAAATCTAACAC
AAGTTTAACATAAGTCCATATATAGGTCTTAGATTTACCAGAAAAAAAGC
GCACATAaccagaaatatgattttgttAGAAGTTGATTAAATAAGAGTGG
CGAATTGATAGAAAGTTCCATTTTTAATCTGACAGGTTGACACGGACAAA
GATGGATTCATTTCATTCGAAGAACTTCGTGATTGGGTGGATAAACAAAG
GATATCGTACATGTGGGAGACACTGGATACAAACATTCGACAAAATGATG
ATGACCATGATGGCTTGATCACGTGGATCGAATATAAACATTCTCAATTT
GGAAAATGGGAAGACGCAGAGACGGAGATAGATGCTGTAAGTAACACTGC
TGAGTCTCCCGGAACTCTCTACAGTCAATTCTTTCTAGTTCGAATctcta
taatttgaataaaatcaaattagaAAGAATAAACTGTAACTTGAATGTCT
TGTCAGCTCAAAACAGGTTGTCTGGTTGCAGGTTATCAGACATCAAATCT
CCATAACTTGGAACTCTATTATAAGTCGAATTCCTCTAAGCCCGAAAAAG
GTTATCTGGTCCCTTCAGACATCAAATCTCcataatttgaacaaatttgc
GTTTCTTTAGCCGTTCAAATGTATTTAATGATTCTTATATAAGACAGCTC
ATGACTGAAGCGTGAATGCAACAGAACAGGTCATTTTCTCTCCCCGTATC
TCACTTCAACAAGACATAAAGATCAGCTTTCCAAAGAAATTAGCAAAGAT
CAGCACATAGTGAACGAGCTACAGTtgacactctataattcgacaTTCTA
ATGTTCGATGCGCTCcgttattcgataatattgaaagtcaccgtcaataa
gagactctctaaacgacgctctattattcgatgaaaattcgaTTCcccat
gaagatcgaattagagagcgtcatcTGTATTTTGATATGGCACAAAAGCA
ACGAAACTGCGAGCTTTTAGTATTAACGCCAATCAAGTAACGTGTTGagc
attttcaaatattgtgCCATATTTTTCCATAGAAATTACAAGCACGTATT
AACAAATCAGAGAACAAATTCAAACTCGCTGATACAAATGGTGACGGCAA
ATTAAGTCGCGACGAATTCGCATTTTTCCGACATCCTGAAGAGAGTCGAG
ATGAGAAATTACAAGACGTTGCTGTCGATGAGGTCATTGATGATATGGAC
CAAAATGGTGACCGGTAGGTGGTTTTTAAACATTGTTTTAAGTGCTTCCA
GTGTTGCCAAACAGTGATAATGCANNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCAAAATTTTCtagctcgcttcgctcgcacactcccttttttgtgttc
ataatgagcgtatagagaggggcgccaaaaacaaaaaatctttaaaaagg
gcgccgtatttgccttggccaccccagagaaattttcccaccacgccact
gtcTTTAGCCGTTCAAACGTATTTAATGATTCTTTTATAAGACGGCTCAT
GACTGAAACGTGAATGCAACAGAACAGGCCCGTATCTCACTTCAACAAGA
CAAAAAGATCAGCTTTCAGTCTTTCAAAGAAATTAGAAGAGATCAGTTCA
TAGTGAAAGAACTTTTTCGATACGGCACAAAAGCACCGACTCTGAGCCTT
AGTATCAACGCCAACCAACTAAGTATTGCATTCAACATTTTCACACATTT
GTACCATATTTTTTCCATAGAAATTACAAGCACGTATTAACAAATCAGAG
AAGAAATTCAAGCTCGCTGATACAAATGGTGACGGCAAATTAAGTCGCGA
CGAATTCGCATTTTTCCGACATCCTGAAGAGAGTCGAGATGAGAAATTAC
AAGACATTGCTGTCGATGAGGTCATTGATGATATGGACCAAAATGGTGAC
CGGTAGGTGGTTTTTAAACATTGTTTTAAGTGCTCTCAGTGTTGCCAAAC
AGTGATAATGCATACTTTTTGCTTTTGTGCTtctaatataatataatata
atatataataaaaattttggctGTGAATAAGGTCCTATATATGTTTGGCT
CAAATTGTCTCGACCATATATCATAAAAGGGGCAGCCAAGGAATTGCTTC
ATATATAAGAGCGAGAATAGAGCAAGTTGAATGGAGCACAAcatttgact
ttatttttatttttcaggaaaattgaTCAAGAAGAATTTTTGGGTCAATA
CGTGGACGATGCAAATAATCCCCCTGATTGGGTCCTCGAAGATAGAAAAC
ATTTCCGTGACAAGCTAGACAAAAACAAGAACGGAATGTTGGAGCGAGAA
GAAATGAAAGCCTGGGTACTACCCAATCGTGATGACACATTGAAAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011507XLOC_011507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020468-exon-sc0000357-1491911889:130843..131156TCONS_00020468-exon-sc0000357-1491911889:130843..131156Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1510915933:130843..131156TCONS_00020468-exon-sc0000357-1510915933:130843..131156Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1575043694:130843..131156TCONS_00020468-exon-sc0000357-1575043694:130843..131156Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1491911889:131678..131878TCONS_00020468-exon-sc0000357-1491911889:131678..131878Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1510915933:131678..131878TCONS_00020468-exon-sc0000357-1510915933:131678..131878Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1575043694:131678..131878TCONS_00020468-exon-sc0000357-1575043694:131678..131878Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1491911889:132575..132724TCONS_00020468-exon-sc0000357-1491911889:132575..132724Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1510915933:132575..132724TCONS_00020468-exon-sc0000357-1510915933:132575..132724Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1575043694:132575..132724TCONS_00020468-exon-sc0000357-1575043694:132575..132724Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1491911889:134663..134694TCONS_00020468-exon-sc0000357-1491911889:134663..134694Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1510915933:134663..134694TCONS_00020468-exon-sc0000357-1510915933:134663..134694Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1575043694:134663..134694TCONS_00020468-exon-sc0000357-1575043694:134663..134694Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1491911889:134960..135142TCONS_00020468-exon-sc0000357-1491911889:134960..135142Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1510915933:134960..135142TCONS_00020468-exon-sc0000357-1510915933:134960..135142Clytia hemisphaericaexon
TCONS_00020468-exon-sc0000357-1575043694:134960..135142TCONS_00020468-exon-sc0000357-1575043694:134960..135142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:130843..135142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.535265	1.02213	1.30745	0.584032	7.21821	5.65735	6.11731	9.83361	6.23752	11.206	1.4653	0.226653	0	0	0	0	1.47964	0.963313
Blast
[Close]
BLAST of TCONS_00020468 vs. Swiss-Prot (Human)
Match: CALU (Calumenin OS=Homo sapiens GN=CALU PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.313e-44
Identity = 82/217 (37.79%), Postives = 141/217 (64.98%), Query Frame = 3 
Query:  216 YDHDAFLGKGHGHDFDGLEPQEAKRRLREMLKKVDTDKDGFISFEELRDWVDKQRISYMWETLDTNIRQNDDDHDGLITWIEYKHSQFGK-WEDAETEIDAKLQARINKSENKFKLADTNGDGKLSRDEFAFFRHPEESRDEKLQDVAVDEVIDDMDQNGDRKIDQEEFLG-QYVDDAN-NPPDWVLEDRKHFRDKLDKNKNGMLEREEMKAWVLPN 857
            YDHDAFLG      FD L P+E+K RL +++ K+D DKDGF++ +EL+DW+   +  +++E ++   + +D + DGL++W EYK++ +G   +D + +     +  + + E +FK+AD +GD   +++EF  F HPEE   + ++D+ V E ++D+D+N D  ID EE++G  Y  D N + P+WV  +R+ F +  DKN++G +++EE K W+LP+
Sbjct:   47 YDHDAFLGAEEAKTFDQLTPEESKERLGKIVSKIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEY--DYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPS 261
The following BLAST results are available for this feature:
BLAST of TCONS_00020468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALU5.313e-4437.79Calumenin OS=Homo sapiens GN=CALU PE=1 SV=2[more]
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