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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020450 ID=TCONS_00020450|Name=TCONS_00020450|organism=Clytia hemisphaerica|type=transcript|length=1036bp
CGTCATCATATTTCGCTAAATCCTGTTAAAAATTGTTAACATATCATTTG
TGTcgttgaaaagtttgaaaatattatttttgtgtCAGAGATCAGTTTTG
ACTTACATGGTGATTGGAGAATTGATCAAAAATTGTCTGATCGGGAAGTT
AccaatcttagaaaaatgtaaaaactgaaaaatatacACTGAGTAGTTTG
TTTTAGAGACATTTTTCTTCAGAAGCTACGATGTATCAAAACAGCGGATG
TTTCCAGTGGAAGTTGTTGAGAAGAATTTTACCATTAGAATTACAATTCG
GATTAAAATGTGGCTCATGTACAGCCATTACTTTATTAAGAAGTCTGGTG
TCTTGTCTCCAGACCTTTGATGACCACGAGGATGTTGCTGTCTTCCGATT
CAATGATGACAAAGTTGACGTAACGCTAGATGAGCAAAGCGCCGCAGATG
ATGAAAGTAGATCGAACAATCATGATACGACAAGTGAGGCTGTTAGAGAA
TTCAACCTACATTTCCGGAAAGAAAGAGAGATTAGTTCTCAGTCTACAGA
TATCGAAGATTATGACATGAACAATAATTGTGATCCCTCCATCAGCAGGA
GAAAGGTCCTGACAATACCTAATATTATCGTTGAAGCTCGTGATGAACCT
GTAGACCAAAATGTTAATATTAATCCTAGACCTAACGATAAAAGTGAAGA
AACGAGTTTTTAAATGGATGATCATATAGTTGCTGCTTGGCCTATACAAA
TTATATATACTTATACTTTTTTAAGGTCCTGATAACCCCCCACCGCATAT
TTTTACCCAATTGTATCCTTTGTTTAGCTATTTGATTtcgaaatttataa
aatttagtCTTTATAAAGTCTTTAATGCTATACAGCAAGCAACAAGGGAA
AATTTCAATATCAAATTATCAAACATTTGGGAAAGACATTGGGTAAAAAA
ACGTGGAGGTCTCAGGATCGAAGCAGCTGTTGGATTggatgttatgttat
gttatcTTATCTCCAATTAAAACTTAGATTTAGTGT Run BLAST on NCBI protein sequence of TCONS_00020450-protein >TCONS_00020450-protein ID=TCONS_00020450-protein|Name=TCONS_00020450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MYQNSGCFQWKLLRRILPLELQFGLKCGSCTAITLLRSLVSCLQTFDDHE
DVAVFRFNDDKVDVTLDEQSAADDESRSNNHDTTSEAVREFNLHFRKERE
ISSQSTDIEDYDMNNNCDPSISRRKVLTIPNIIVEARDEPVDQNVNINPR
PNDKSEETSF Run BLAST on NCBI transcript from alignment at sc0000356:219676..220711 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020450 ID=TCONS_00020450|Name=TCONS_00020450|organism=Clytia hemisphaerica|type=transcript|length=1036bp|location=Sequence derived from alignment at sc0000356:219676..220711 (Clytia hemisphaerica)
ACACTAAATCTAAGTTTTAATTGGAGATAAgataacataacataacatcc
AATCCAACAGCTGCTTCGATCCTGAGACCTCCACGTTTTTTTACCCAATG
TCTTTCCCAAATGTTTGATAATTTGATATTGAAATTTTCCCTTGTTGCTT
GCTGTATAGCATTAAAGACTTTATAAAGactaaattttataaatttcgaA
ATCAAATAGCTAAACAAAGGATACAATTGGGTAAAAATATGCGGTGGGGG
GTTATCAGGACCTTAAAAAAGTATAAGTATATATAATTTGTATAGGCCAA
GCAGCAACTATATGATCATCCATTTAAAAACTCGTTTCTTCACTTTTATC
GTTAGGTCTAGGATTAATATTAACATTTTGGTCTACAGGTTCATCACGAG
CTTCAACGATAATATTAGGTATTGTCAGGACCTTTCTCCTGCTGATGGAG
GGATCACAATTATTGTTCATGTCATAATCTTCGATATCTGTAGACTGAGA
ACTAATCTCTCTTTCTTTCCGGAAATGTAGGTTGAATTCTCTAACAGCCT
CACTTGTCGTATCATGATTGTTCGATCTACTTTCATCATCTGCGGCGCTT
TGCTCATCTAGCGTTACGTCAACTTTGTCATCATTGAATCGGAAGACAGC
AACATCCTCGTGGTCATCAAAGGTCTGGAGACAAGACACCAGACTTCTTA
ATAAAGTAATGGCTGTACATGAGCCACATTTTAATCCGAATTGTAATTCT
AATGGTAAAATTCTTCTCAACAACTTCCACTGGAAACATCCGCTGTTTTG
ATACATCGTAGCTTCTGAAGAAAAATGTCTCTAAAACAAACTACTCAGTg
tatatttttcagtttttacatttttctaagattggTAACTTCCCGATCAG
ACAATTTTTGATCAATTCTCCAATCACCATGTAAGTCAAAACTGATCTCT
GacacaaaaataatattttcaaacttttcaacgACACAAATGATATGTTA
ACAATTTTTAACAGGATTTAGCGAAATATGATGACG Coding sequence (CDS) from alignment at sc0000356:219676..220711 >TCONS_00020450 ID=TCONS_00020450|Name=TCONS_00020450|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000356:219676..220711 (Clytia hemisphaerica)
TTAAAAACTCGTTTCTTCACTTTTATCGTTAGGTCTAGGATTAATATTAA
CATTTTGGTCTACAGGTTCATCACGAGCTTCAACGATAATATTAGGTATT
GTCAGGACCTTTCTCCTGCTGATGGAGGGATCACAATTATTGTTCATGTC
ATAATCTTCGATATCTGTAGACTGAGAACTAATCTCTCTTTCTTTCCGGA
AATGTAGGTTGAATTCTCTAACAGCCTCACTTGTCGTATCATGATTGTTC
GATCTACTTTCATCATCTGCGGCGCTTTGCTCATCTAGCGTTACGTCAAC
TTTGTCATCATTGAATCGGAAGACAGCAACATCCTCGTGGTCATCAAAGG
TCTGGAGACAAGACACCAGACTTCTTAATAAAGTAATGGCTGTACATGAG
CCACATTTTAATCCGAATTGTAATTCTAATGGTAAAATTCTTCTCAACAA
CTTCCACTGGAAACATCCGCTGTTTTGATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020450-exon-sc0000356-1491911889:219676..220711 | TCONS_00020450-exon-sc0000356-1491911889:219676..220711 | Clytia hemisphaerica | exon |
| TCONS_00020450-exon-sc0000356-1510915933:219676..220711 | TCONS_00020450-exon-sc0000356-1510915933:219676..220711 | Clytia hemisphaerica | exon |
| TCONS_00020450-exon-sc0000356-1575043694:219676..220711 | TCONS_00020450-exon-sc0000356-1575043694:219676..220711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:219676..220711 . |
Blast
The following BLAST results are available for this feature:
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