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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020444 ID=TCONS_00020444|Name=TCONS_00020444|organism=Clytia hemisphaerica|type=transcript|length=2882bp
GATTAATTTTCTCCACACGCCACATTGTATATACAGAacaaattttacag
attttatatttaaaatacACTAATGTAATGAATTGATTAAGATAACGACA
TCAATTAAAACAATTATTATCATTGGAAAAAGTACCATACATCAAAAACC
AGTCAAAATCTCCTACGCTGGAAAGATTTTGCGAGCAAAGATTCTCACTC
AAAAAAAGCTATggaagcttttgaaaaaaaagaaactttcacAACTTCGA
TTATATGTCAAAAATCATTTCTCTGTCTATAAATTCACTCCTGGATTTAT
TTTTGCTACAATTATCTCCTTTTGTTATTATACCTTAtgaaatttctttg
gaaaaatgTCTCTGTGCAACGACCGATCATTGCTCAACCTCTGTTGGTAA
ATTGAGAAAAACTGCAGATCTACTCGAAAttgtttttccaaatttatatg
ttttttttcttttcaaaaacaatGTATCAAAATATACCAACTgtccaaat
cttttttttttttcaatcatccTTTAAGCTATCATTTAATGTTAATctga
tcaaaatcaaaaaggtTGTCTTCACCATTATCTTCGTTCGTTTGTTTACT
TGTGCCTTCATCTTCTCCCGCATCATCTTTGGTGCTGGGGGCTGCTTCGT
TCACAACGTCGTCTGCTTGCAATTTTGGCGTGGGATTTGCGTTACCATTA
CTTCGTTGTGTAAATcgaattttaagaattttcggCTGATGTGTTTCTGC
GCTGTGACTATTTTCAATAGGATAGCTTTTTGGGTTGTTGATGGATAAGC
CAGTTCCTCTATAGACGAAGAAATCGCTTAGTTTACTCAATTTAATCTTT
GGATTATCTGTAGTGGTTTTCACaagcttaattttttttaacggTTCGTC
GTTTGCAGTTGCATTATCAGCAGTAGTACTCGTGGTGCTTGCAGAAGCAA
CAGCAGTTGTAGAACCTGGAACTTGTATTATAGTTGTGCTGCTTGATGAG
GTACTTGGCGCAGCAGTAGTACCGGTAGTgatgcttgtagaagcagcatc
agCTGTAGAAGCTGGAACTTGTGTGATAGTTGCTGTGCTTGATGAGGTAC
TTGGTCCAGGAGTAGTATCAGCGGTGGTGCTTGCAGAAGCAGCAGCAGCA
GTTGCAGCAGCTGGAACTTGCGTGTTAATTGTGCTGCTTAATGAGGTACT
TGGCGCAGCAGTAGTACCGGTAGTgatgcttgtagaagcagcatcagtTG
TAGAACCTGGAACTTGTGTGATAGTTGCTGTGCTTAATGAGGTACTTGGC
GCAGCAGTAGTACCGGTAGTgatgcttgtagaagcagcagCAGCAGTTGT
AGCAGTTTGCGTGCTGCTTGATGTGGTACTGTCAGCGGGGCTTTTAGTAG
CACCTATAGCAATAGACTTGCGATTTATTTCATTGATGATGTTTTGTAAT
TGCTTCTGAGTAAGCTTACAACTTCCACCAATGACAAATGCTTTATCATC
TTCACAAGCCCGATTAATGATGCTTTTAACGGCTTTTGTTGTTTCATCTT
TAATGTGAAAAGAATCAAAATAAACATCACCAAATGCACCATTAAAATCC
TTCATTTGTTTTCCATTCAAAATAGGGAAAATAAAAGGCCGGGTATCATT
TCCTGTATCGATTACCCCTATTTCCAGCTTGTTTCCATTTCCTTCTAACT
CTGCTCTCAAGCACGTTTTATCGAAGTACATATCCATTCCGGACTCAGCT
TCAATTACCTCAATAGCTCCTCCATAAACAAAGTAGTCAATGTTCTTGCA
ATTCCCCGTTTCGCAGTCGGTTGGACAAGTGTAACATTCCCCACTTATTT
TGAATTCTGTAGGGTTCGTTAGTTCTCTAATCCATGagatcaactttttt
ttattcacaTTGAAATCTCCACCAATGACAAAATTTCCCTTTTCATGAAG
ATCCCGTAAAATCTTCATAACTGCTATTTGCTTTTCGTCCTTTTTCGCTG
TAGTATTTTTTCCATGAAAAGATGTAACGTTTAAAGTTCTGCCACCAATA
TTGAACTTCACAGATGCAAATCTCTCTCCCTGGTggttatattcaaattt
ttcatataTACCATGTCTTACTAGAGCTGTAGCTTCGGAACTGATGCTTC
CTGTTTTGTCTTTACTTGTGTTAATGTTATACATATTTAACCCGTACCAC
CATGGGTCATTTTCATAAACCTTCAACATAGAAATCTCCTGGAGAAAAAC
GACGTCAGGGTTATGATCGTTCAATTTCGAAACGTATGCTTTTCTAAATC
TTTCCTGGTCACCAAAAGAGCTTTTGCCATTAATGGTTATAAACTTTATA
TCCACCGCATCTTGGTCATTTTGTTCTGCCATGTTGATCGAATGACACTC
GTTGAAGATTGTGTGGTAAGATTGATTCATTAGCAAAGATATTGATTTAC
ATGAGAAGGTAAGCTATTCTGATTATGTATTCTATTTTTTTGTATAGATT
TAAAATGGGTACTGCTGCAATAGGTATTATTCTTGTATTCTCTGGAACAG
TATGACATTTAGTTATCGGTATCAATAGAGAAGTTTTCATCAATAATAAT
AGCTGACAGATATTAGGCATATTATACAGCTTGTTTATTTAAGTATTCAA
TTGAACCATCCTAATCAATGGAAGGGATTAATCAAACTCATCTTTCACAA
CGTTTATGAAGCTTCATATTATCCGTTTTGATCGGCTATTCAATTAATTC
TCATACACATAATTCTTATTACTAAATGAACTCCCCTTGGTTTTTTTTAA
ACCtgtgtaaatttatttttacaaaaactcAGGGTAAAATAATCCTCGTC
TCGCAAAGGTTCTtagcttaaccctattagcc Run BLAST on NCBI protein sequence of TCONS_00020444-protein >TCONS_00020444-protein ID=TCONS_00020444-protein|Name=TCONS_00020444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MNQSYHTIFNECHSINMAEQNDQDAVDIKFITINGKSSFGDQERFRKAYV
SKLNDHNPDVVFLQEISMLKVYENDPWWYGLNMYNINTSKDKTGSISSEA
TALVRHGIYEKFEYNHQGERFASVKFNIGGRTLNVTSFHGKNTTAKKDEK
QIAVMKILRDLHEKGNFVIGGDFNVNKKKLISWIRELTNPTEFKISGECY
TCPTDCETGNCKNIDYFVYGGAIEVIEAESGMDMYFDKTCLRAELEGNGN
KLEIGVIDTGNDTRPFIFPILNGKQMKDFNGAFGDVYFDSFHIKDETTKA
VKSIINRACEDDKAFVIGGSCKLTQKQLQNIINEINRKSIAIGATKSPAD
STTSSSTQTATTAAAASTSITTGTTAAPSTSLSTATITQVPGSTTDAAST
SITTGTTAAPSTSLSSTINTQVPAAATAAAASASTTADTTPGPSTSSSTA
TITQVPASTADAASTSITTGTTAAPSTSSSSTTIIQVPGSTTAVASASTT
STTADNATANDEPLKKIKLVKTTTDNPKIKLSKLSDFFVYRGTGLSINNP
KSYPIENSHSAETHQPKILKIRFTQRSNGNANPTPKLQADDVVNEAAPST
KDDAGEDEGTSKQTNEDNGEDNLFDFDQINIK Run BLAST on NCBI transcript from alignment at sc0000356:178576..181457 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020444 ID=TCONS_00020444|Name=TCONS_00020444|organism=Clytia hemisphaerica|type=transcript|length=2882bp|location=Sequence derived from alignment at sc0000356:178576..181457 (Clytia hemisphaerica)
ggctaatagggttaagctaAGAACCTTTGCGAGACGAGGATTATTTTACC
CTgagtttttgtaaaaataaatttacacaGGTTTAAAAAAAACCAAGGGG
AGTTCATTTAGTAATAAGAATTATGTGTATGAGAATTAATTGAATAGCCG
ATCAAAACGGATAATATGAAGCTTCATAAACGTTGTGAAAGATGAGTTTG
ATTAATCCCTTCCATTGATTAGGATGGTTCAATTGAATACTTAAATAAAC
AAGCTGTATAATATGCCTAATATCTGTCAGCTATTATTATTGATGAAAAC
TTCTCTATTGATACCGATAACTAAATGTCATACTGTTCCAGAGAATACAA
GAATAATACCTATTGCAGCAGTACCCATTTTAAATCTATACAAAAAAATA
GAATACATAATCAGAATAGCTTACCTTCTCATGTAAATCAATATCTTTGC
TAATGAATCAATCTTACCACACAATCTTCAACGAGTGTCATTCGATCAAC
ATGGCAGAACAAAATGACCAAGATGCGGTGGATATAAAGTTTATAACCAT
TAATGGCAAAAGCTCTTTTGGTGACCAGGAAAGATTTAGAAAAGCATACG
TTTCGAAATTGAACGATCATAACCCTGACGTCGTTTTTCTCCAGGAGATT
TCTATGTTGAAGGTTTATGAAAATGACCCATGGTGGTACGGGTTAAATAT
GTATAACATTAACACAAGTAAAGACAAAACAGGAAGCATCAGTTCCGAAG
CTACAGCTCTAGTAAGACATGGTAtatatgaaaaatttgaatataaccAC
CAGGGAGAGAGATTTGCATCTGTGAAGTTCAATATTGGTGGCAGAACTTT
AAACGTTACATCTTTTCATGGAAAAAATACTACAGCGAAAAAGGACGAAA
AGCAAATAGCAGTTATGAAGATTTTACGGGATCTTCATGAAAAGGGAAAT
TTTGTCATTGGTGGAGATTTCAAtgtgaataaaaaaaagttgatctCATG
GATTAGAGAACTAACGAACCCTACAGAATTCAAAATAAGTGGGGAATGTT
ACACTTGTCCAACCGACTGCGAAACGGGGAATTGCAAGAACATTGACTAC
TTTGTTTATGGAGGAGCTATTGAGGTAATTGAAGCTGAGTCCGGAATGGA
TATGTACTTCGATAAAACGTGCTTGAGAGCAGAGTTAGAAGGAAATGGAA
ACAAGCTGGAAATAGGGGTAATCGATACAGGAAATGATACCCGGCCTTTT
ATTTTCCCTATTTTGAATGGAAAACAAATGAAGGATTTTAATGGTGCATT
TGGTGATGTTTATTTTGATTCTTTTCACATTAAAGATGAAACAACAAAAG
CCGTTAAAAGCATCATTAATCGGGCTTGTGAAGATGATAAAGCATTTGTC
ATTGGTGGAAGTTGTAAGCTTACTCAGAAGCAATTACAAAACATCATCAA
TGAAATAAATCGCAAGTCTATTGCTATAGGTGCTACTAAAAGCCCCGCTG
ACAGTACCACATCAAGCAGCACGCAAACTGCTACAACTGCTGctgctgct
tctacaagcatcACTACCGGTACTACTGCTGCGCCAAGTACCTCATTAAG
CACAGCAACTATCACACAAGTTCCAGGTTCTACAactgatgctgcttcta
caagcatcACTACCGGTACTACTGCTGCGCCAAGTACCTCATTAAGCAGC
ACAATTAACACGCAAGTTCCAGCTGCTGCAACTGCTGCTGCTGCTTCTGC
AAGCACCACCGCTGATACTACTCCTGGACCAAGTACCTCATCAAGCACAG
CAACTATCACACAAGTTCCAGCTTCTACAGctgatgctgcttctacaagc
atcACTACCGGTACTACTGCTGCGCCAAGTACCTCATCAAGCAGCACAAC
TATAATACAAGTTCCAGGTTCTACAACTGCTGTTGCTTCTGCAAGCACCA
CGAGTACTACTGCTGATAATGCAACTGCAAACGACGAAccgttaaaaaaa
attaagcttGTGAAAACCACTACAGATAATCCAAAGATTAAATTGAGTAA
ACTAAGCGATTTCTTCGTCTATAGAGGAACTGGCTTATCCATCAACAACC
CAAAAAGCTATCCTATTGAAAATAGTCACAGCGCAGAAACACATCAGccg
aaaattcttaaaattcgATTTACACAACGAAGTAATGGTAACGCAAATCC
CACGCCAAAATTGCAAGCAGACGACGTTGTGAACGAAGCAGCCCCCAGCA
CCAAAGATGATGCGGGAGAAGATGAAGGCACAAGTAAACAAACGAACGAA
GATAATGGTGAAGACAacctttttgattttgatcagATTAACATTAAATG
ATAGCTTAAAggatgattgaaaaaaaaaaaagatttggacAGTTGGTATA
TTTTGATACattgtttttgaaaagaaaaaaaacatataaatttggaaaaa
caaTTTCGAGTAGATCTGCAGTTTTTCTCAATTTACCAACAGAGGTTGAG
CAATGATCGGTCGTTGCACAGAGAcatttttccaaagaaatttcaTAAGG
TATAATAACAAAAGGAGATAATTGTAGCAAAAATAAATCCAGGAGTGAAT
TTATAGACAGAGAAATGATTTTTGACATATAATCGAAGTTgtgaaagttt
cttttttttcaaaagcttccATAGCTTTTTTTGAGTGAGAATCTTTGCTC
GCAAAATCTTTCCAGCGTAGGAGATTTTGACTGGTTTTTGATGTATGGTA
CTTTTTCCAATGATAATAATTGTTTTAATTGATGTCGTTATCTTAATCAA
TTCATTACATTAGTgtattttaaatataaaatctgtaaaatttgtTCTGT
ATATACAATGTGGCGTGTGGAGAAAATTAATC Coding sequence (CDS) from alignment at sc0000356:178576..181457 >TCONS_00020444 ID=TCONS_00020444|Name=TCONS_00020444|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0000356:178576..181457 (Clytia hemisphaerica)
ATGAATCAATCTTACCACACAATCTTCAACGAGTGTCATTCGATCAACAT
GGCAGAACAAAATGACCAAGATGCGGTGGATATAAAGTTTATAACCATTA
ATGGCAAAAGCTCTTTTGGTGACCAGGAAAGATTTAGAAAAGCATACGTT
TCGAAATTGAACGATCATAACCCTGACGTCGTTTTTCTCCAGGAGATTTC
TATGTTGAAGGTTTATGAAAATGACCCATGGTGGTACGGGTTAAATATGT
ATAACATTAACACAAGTAAAGACAAAACAGGAAGCATCAGTTCCGAAGCT
ACAGCTCTAGTAAGACATGGTAtatatgaaaaatttgaatataaccACCA
GGGAGAGAGATTTGCATCTGTGAAGTTCAATATTGGTGGCAGAACTTTAA
ACGTTACATCTTTTCATGGAAAAAATACTACAGCGAAAAAGGACGAAAAG
CAAATAGCAGTTATGAAGATTTTACGGGATCTTCATGAAAAGGGAAATTT
TGTCATTGGTGGAGATTTCAAtgtgaataaaaaaaagttgatctCATGGA
TTAGAGAACTAACGAACCCTACAGAATTCAAAATAAGTGGGGAATGTTAC
ACTTGTCCAACCGACTGCGAAACGGGGAATTGCAAGAACATTGACTACTT
TGTTTATGGAGGAGCTATTGAGGTAATTGAAGCTGAGTCCGGAATGGATA
TGTACTTCGATAAAACGTGCTTGAGAGCAGAGTTAGAAGGAAATGGAAAC
AAGCTGGAAATAGGGGTAATCGATACAGGAAATGATACCCGGCCTTTTAT
TTTCCCTATTTTGAATGGAAAACAAATGAAGGATTTTAATGGTGCATTTG
GTGATGTTTATTTTGATTCTTTTCACATTAAAGATGAAACAACAAAAGCC
GTTAAAAGCATCATTAATCGGGCTTGTGAAGATGATAAAGCATTTGTCAT
TGGTGGAAGTTGTAAGCTTACTCAGAAGCAATTACAAAACATCATCAATG
AAATAAATCGCAAGTCTATTGCTATAGGTGCTACTAAAAGCCCCGCTGAC
AGTACCACATCAAGCAGCACGCAAACTGCTACAACTGCTGctgctgcttc
tacaagcatcACTACCGGTACTACTGCTGCGCCAAGTACCTCATTAAGCA
CAGCAACTATCACACAAGTTCCAGGTTCTACAactgatgctgcttctaca
agcatcACTACCGGTACTACTGCTGCGCCAAGTACCTCATTAAGCAGCAC
AATTAACACGCAAGTTCCAGCTGCTGCAACTGCTGCTGCTGCTTCTGCAA
GCACCACCGCTGATACTACTCCTGGACCAAGTACCTCATCAAGCACAGCA
ACTATCACACAAGTTCCAGCTTCTACAGctgatgctgcttctacaagcat
cACTACCGGTACTACTGCTGCGCCAAGTACCTCATCAAGCAGCACAACTA
TAATACAAGTTCCAGGTTCTACAACTGCTGTTGCTTCTGCAAGCACCACG
AGTACTACTGCTGATAATGCAACTGCAAACGACGAAccgttaaaaaaaat
taagcttGTGAAAACCACTACAGATAATCCAAAGATTAAATTGAGTAAAC
TAAGCGATTTCTTCGTCTATAGAGGAACTGGCTTATCCATCAACAACCCA
AAAAGCTATCCTATTGAAAATAGTCACAGCGCAGAAACACATCAGccgaa
aattcttaaaattcgATTTACACAACGAAGTAATGGTAACGCAAATCCCA
CGCCAAAATTGCAAGCAGACGACGTTGTGAACGAAGCAGCCCCCAGCACC
AAAGATGATGCGGGAGAAGATGAAGGCACAAGTAAACAAACGAACGAAGA
TAATGGTGAAGACAacctttttgattttgatcagATTAACATTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020444-exon-sc0000356-1491911889:178576..181457 | TCONS_00020444-exon-sc0000356-1491911889:178576..181457 | Clytia hemisphaerica | exon |
| TCONS_00020444-exon-sc0000356-1510915933:178576..181457 | TCONS_00020444-exon-sc0000356-1510915933:178576..181457 | Clytia hemisphaerica | exon |
| TCONS_00020444-exon-sc0000356-1575043694:178576..181457 | TCONS_00020444-exon-sc0000356-1575043694:178576..181457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:178576..181457 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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