TCONS_00020443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020443
Unique NameTCONS_00020443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020443 ID=TCONS_00020443|Name=TCONS_00020443|organism=Clytia hemisphaerica|type=transcript|length=289bp
TGTTTATGTCAACTTATTGATTTTTTACCTGAATTATTTGTTATAGTTTA
TTACTAAATTGTTTTCATATggtattgattttatttttatttgggaTTTA
ATTCATCTACTATCTTTGGTTTATTGTTTACGAAATTATAAATATTGTGA
TTGAAATTAGTATTTAGATTACTATAATGAAAATCAGCATTTTTCGTAAA
ATCTTAATTAGTatataaaaactttatttaaatGAATTATACAATTTCTT
ATATACACATTGTATCATACCCTGcaaatcatatttttt
Run BLAST on NCBI

transcript from alignment at sc0000356:130442..130730

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020443 ID=TCONS_00020443|Name=TCONS_00020443|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0000356:130442..130730 (Clytia hemisphaerica)
aaaaaatatgatttgCAGGGTATGATACAATGTGTATATAAGAAATTGTA
TAATTCatttaaataaagtttttatatACTAATTAAGATTTTACGAAAAA
TGCTGATTTTCATTATAGTAATCTAAATACTAATTTCAATCACAATATTT
ATAATTTCGTAAACAATAAACCAAAGATAGTAGATGAATTAAAtcccaaa
taaaaataaaatcaataccATATGAAAACAATTTAGTAATAAACTATAAC
AAATAATTCAGGTAAAAAATCAATAAGTTGACATAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011486XLOC_011486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020443-exon-sc0000356-1491911889:130442..130730TCONS_00020443-exon-sc0000356-1491911889:130442..130730Clytia hemisphaericaexon
TCONS_00020443-exon-sc0000356-1510915933:130442..130730TCONS_00020443-exon-sc0000356-1510915933:130442..130730Clytia hemisphaericaexon
TCONS_00020443-exon-sc0000356-1575043694:130442..130730TCONS_00020443-exon-sc0000356-1575043694:130442..130730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:130442..130730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.57226	1.8819	0.567608	2.12555	0.744074	2.76497	3.13104	5.5866	4.40434	3.65916	2.25624	1.88323	0.662853	2.71761	1.87726	1.96442	0	1.24924	0	0	1.42203	0.846086	0	0	0.980044	1.49776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top