TCONS_00020427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020427
Unique NameTCONS_00020427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020427 ID=TCONS_00020427|Name=TCONS_00020427|organism=Clytia hemisphaerica|type=transcript|length=922bp
GTTAGAAAATAAGAATTCAAGATGACAGAACCAATGACGTACGAGCAATA
TGCAAAGGACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACC
CTGTCCGTAAAATCGCTTTCAAAATATCCACTTCAAAGCTGTTCGATTCG
TTTATTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTGC
TCCACTACCACTCAACGATACAAATGAGCTGAACAATAGTATAGAGAAGC
TTGCGTCAAAATGCTAACTCAAGGTTTCATTTTACATGCTGGTTCGTACA
TTCGAAACGGATGGAACTTGCTGGATTTCACTGTCGTTGTTACAGGTATT
TTGGGTTTACCGTCGGTTGGAATGGGTGAAAATGCGGGACCAATGAAAGT
CATCAAAGCTGCTAGAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTAC
CAAGTTTACAAATTGTTATGAGTGCCATCATCAAATCTATGGCCTCACTT
TTACAAATTTCTCTACTCATTGGTTTTGTAATTGTTATTTTCGCCATCAT
TTTCTTGTCTTTTCTACCCGGAAAATTCCATTACACATGTTTCAAGAATG
CAACTGAACCGTTTCCTCAAGAATATCAAATAGAAGCTGGTCGACTATGT
TCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATGTAAAAG
ATACTGGGATGGTCCTAATTTTGGTGTGACAAATTTCGATAATATTTTCA
GTGCATGTCTGACTGTCTTTACGTGTATCACATGTGAAGGGTGGACAGAT
ACTATGTATTGGACGATGGATGTTATGGATTATGATGGATATTATATGTT
TTCGATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTGAATT
TAGTCTGTGGTGTCCTCAGCGG
Run BLAST on NCBI

transcript from alignment at sc0000356:114450..118088-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020427 ID=TCONS_00020427|Name=TCONS_00020427|organism=Clytia hemisphaerica|type=transcript|length=3639bp|location=Sequence derived from alignment at sc0000356:114450..118088- (Clytia hemisphaerica)
GTTAGAAAATAAGAATTCAAGATGACAGAACCAATGACGTACGAGCAATA
TGCAAAGGACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACC
CTGTCCGTAAAATCGCTTTCAAAATATCCACTTCAAAGGTATTATATTTT
CTTCAGAAGCTTTGAAACCCTGTTCGAATTATTTTGTTAGGGTTGGGTCT
CCAAAATTTTGACTTCATAAGAGGTAAATATTGATTGACTTTGAGTCATT
TTAGCGCTCTTTTAGATGAGCAATAAAGGTTTTGGGTGATTTTTAGGGGC
ATGCTTTTAATATTTTTGTCTTTAAAAATTTTTACATCTTATTGCGCTTG
TAATTTCTGATTTAGTTCTATTTATTATTTTCTAGCTGTTCGATTCGTTT
ATTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTGCTCC
ACTACCACTCAACGATACAAATGAGCTGAACAATAGTATAGTAAGTCTAT
GTTTTAAATATCCCCTTTATTGTGTTGTGCCTCATCAAACCGTCTGGCTG
GGTGCACTCCTTACGGGTTTAAAGCAATTCAAAGACACAATTAATTTCTA
CTTTGAACTTCCTCGTGTTAACAGACCCTATAACTTTTCATTAGGCCTAG
ATTGAGTAGCTAGGTTCATCTTTTAAGCCTCCCTTTCGTATTAACCACCT
CATCACCACCGTTTAGACCTTACCATCACCCAAAAGAGGTTATCTCTAGA
TCTAACATTTCTGTATATGTATACCGAGTTTATCGTTCTACATCAGCAAT
TTGAGCTTTACGAAGCTCGTTTGACATTCTACCGATTCGTATTTGTGAAG
GTTTCGATCACAGACTTGCACCGCCATGGACTGTGTTCGAATCCCAAGCA
CTTCCAGGCAGGGTGTTAGGGAAATATGGTGATAGATTCTCTACCTTTAC
TCACATTTCTTTATGTTTTTAATCCTTTCAGGAAGCTTTGGAGGTCTATT
TGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAAATGCTAACTCAAGGT
TTCATTTTACATGCTGGTTCGTACATTCGAAACGGATGGAACTTGCTGGA
TTTCACTGTCGTTGTTACAGGGTAAATGCTTTTATAAACAGCATGTCCCG
AAAAAAGCGGACAAATTTTTATATAAAGTAAAATCCTCATAATATAATTT
ATGCCGATTTTTATGACTTACATACTAAATATCTCAATCGCAAAAACCTG
TTCAATCATTTCTGGGATACTGAATATCTATTGATTGAACTGTAATCCTA
TTTCAATTATTCTAATTCAAGTTTAATGAGTTTTGAGGATTTTACATTTG
TCCACTTTTTTTTTGAGACACACAGTACAACGGAAATGTTCAAATACATG
ATCTAGGTGGTTTGATTATATCTAAAATGAGCCTTGTTTTTCTTTACAAC
TATACATGCTTTTCTCTTTGTAAGAACGCATAAAGCTAAATTTTAGCAAC
GACCTAAGAGCAAATTATAAGACCAATCCAAACAATACAAGCCTTATAGA
TTTTGTAAACGGTTTAGTAGAGAATGCTGATTTGTAGCCCCTAGCAAGTC
AATAAAGAAATCATAAACCGTGTACTATTCCAAAGCAAGAATATCGATGT
CTTGATTTCCGAAAGGTCCTACCCGATGAATAAAAGAACACACTCTAAAA
TCTAAAAAATACCCACATCTTTGATAAGACAAAACGCTTAATATAAAGCT
CTTATCTTGCCGTTACTATAATTATGTTATCATAATTCTCTTATAGTATT
TTGGGTTTACCGTCGGTTGGAATGGGTGAAAATGCGGGACCAATGAAAGT
CATCAAAGCTGCTAGAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTAC
CAAGTGAGTTTTCTAAAGAAATCATCAGATTGTTTGAGATCCTGTTGATA
GTACAACAAGCCAGTTTTTTTTCGAGTGTGAAAACATGCTATGTTCTTAA
CGACGCTCTTAAATTTTGAGATCAATTAAATCATCAAAGAATTGTTACCT
GGACTGATTAAGATGTTCTTATTTTTTAGTAAGATTTCAGCCTAAATGTT
CTTATAAATTGGGTTCCAATACGTGAATTCTCATTTTTACATTTCAGGTT
TACAAATTGTTATGAGTGCCATCATCAAATCTATGGCCTCACTTTTACAA
ATTTCTCTACTCATTGGTTTTGTAATTGTTATTTTCGCCATCATTTTCTT
GTCTTTTCTACCCGGAAAATTCCATTACACATGTTTCAAGAATGCAACTG
AACCGTTTCCTCAAGAATGTAAGTTGTTTGTTGTAGGTTTGTTTGTTAGC
TTGTAAGAACAAGTTAAGAACCTTCAGAACGTAGGGTGGAAAAAATCTTT
TTAGAAAATGCTGAATTTTTAAATCCTGATTCGTTTAAGATAAACAATCG
ACTACTATTATTATCAACTCGAGCTAAAATAGAAAGCTACATTTTTATAA
TTCTGGCCTCTGGATCTTAATTTTAAACGCAGATAGCTTGAAAACATTAT
AAGAGGGTTTCGCTTCTTAAAAACCACAATATTATGTACACAATTAGAAC
GGCGCATGCAACTATCCTTCCTAACCTTCTTTCGAATTTTGAGTTTTTTT
ACCTACAGAAGCACACTCCCCTCCCCATTCGTGTGACGTAATATAATTCC
AGAACGGCGTTTTTTACCATCTATCACCAAAGATTTGAAATTCGACCTCA
AGAAAAGAAAGTTTTGACAGTACTATACGGAATAAAAATGAAACATAAAA
AAGAGATATTTGTATAAGTTAACTTGAATAATCGTCCTGAATTTAATGTT
AGTACCTACGTACAATAGTTTCAAGAATAAACAATTTCCTTTTTAGATCA
AATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCATGTC
CCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGGTGTG
ACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGTGTAT
CACATGTGAAGGGTGGACAGATACTATGTATTGGGTGAGATCGCTTTCTT
TATCATTCTTATAAGTATTGATGACTAAGAACTTGTCAAATAGAACAAAA
ATAAGTCCGAAAAAAGACATCTTGGCTCCTTGATACTCAGATATAGACAC
AATGCAATACATAGAAGCGCCAAAACAGGGTCTTAGAACACACTTACAAA
GATAAGTTTATTTAAGGGATGTTAATTTCATGGTTTCGTCTGCCGCCGCA
ACATAATGATGATGGTTTTTTTTGGGAAGGCGCTAATTTCCCCCTTGCCG
GTTGCCATTTTTTATAAACAGTCCAATCTCCTCTTAGAAACAATGTTTAC
GCTTCTGCAACCCTGGGCTAAGAAAATTGCTAATATTAATGTGAAATTAT
TTCGTGCTTCAAAGCCGAGCTGTTTCCTGATCTTGTAAAAGTGGGGGTTA
GTTAATAGGTGTATTCTTTTTCTTCGCAGACGATGGATGTTATGGATTAT
GATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGTCATTGGTGC
TCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011474XLOC_011474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020427-exon-sc0000356-1575043694:117951..118088TCONS_00020427-exon-sc0000356-1575043694:117951..118088Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1575043694:117599..117703TCONS_00020427-exon-sc0000356-1575043694:117599..117703Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1575043694:116968..117070TCONS_00020427-exon-sc0000356-1575043694:116968..117070Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1575043694:116186..116292TCONS_00020427-exon-sc0000356-1575043694:116186..116292Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1575043694:115771..115941TCONS_00020427-exon-sc0000356-1575043694:115771..115941Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1575043694:115005..115192TCONS_00020427-exon-sc0000356-1575043694:115005..115192Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1575043694:114450..114559TCONS_00020427-exon-sc0000356-1575043694:114450..114559Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:117951..118088TCONS_00020427-exon-sc0000356-1510915933:117951..118088Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:117599..117703TCONS_00020427-exon-sc0000356-1510915933:117599..117703Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:116968..117070TCONS_00020427-exon-sc0000356-1510915933:116968..117070Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:116186..116292TCONS_00020427-exon-sc0000356-1510915933:116186..116292Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:115771..115941TCONS_00020427-exon-sc0000356-1510915933:115771..115941Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:115005..115192TCONS_00020427-exon-sc0000356-1510915933:115005..115192Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1510915933:114450..114559TCONS_00020427-exon-sc0000356-1510915933:114450..114559Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:117951..118088TCONS_00020427-exon-sc0000356-1491911889:117951..118088Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:117599..117703TCONS_00020427-exon-sc0000356-1491911889:117599..117703Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:116968..117070TCONS_00020427-exon-sc0000356-1491911889:116968..117070Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:116186..116292TCONS_00020427-exon-sc0000356-1491911889:116186..116292Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:115771..115941TCONS_00020427-exon-sc0000356-1491911889:115771..115941Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:115005..115192TCONS_00020427-exon-sc0000356-1491911889:115005..115192Clytia hemisphaericaexon
TCONS_00020427-exon-sc0000356-1491911889:114450..114559TCONS_00020427-exon-sc0000356-1491911889:114450..114559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:114450..118088 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.084875	0.0485223	0.112678	0	0	0	0	0.139346	0	0	0.654251	0	0.557754	0	1.34244	0.283909	0	1.01446	0	0	0.756778	1.35927	0.699931	1.05702	0.28015	0	0.658747	0.436893	0.165684	0
Blast
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BLAST of TCONS_00020427 vs. Swiss-Prot (Human)
Match: CAC1A (Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 2.593e-53
Identity = 115/225 (51.11%), Postives = 151/225 (67.11%), Query Frame = 3 
Query:  246 EACVKMLTQGFILHAGSYIRNGWNLLDFTVVVTGILGLPSVGMGENAGPMKVIKAARVLRPLKLVSGVPSLQIVMSAIIKSMASLLQISXXXXXXXXXXXXXXXXXXPGKFHYTCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLS 920
            EA +K++  GF  H GSY+RNGWN++DF VV+TGIL   +VG   +   ++ ++A RVLRPLKLVSG+PSLQ+V+ +I+K+M  LLQI LL+ F I+IFAII L F  GKFH TCF+  T+    + Q E+   C      R CP G+ C+ YW+GPN G+T FDNI  A LTVF CIT EGWTD +Y + D       +++ I   L +IG+ FMLNLV GVLS
Sbjct:  147 EAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILA--TVGTEFD---LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCFEEGTD----DIQGESPAPCGTEEPARTCPNGTKCQPYWEGPNNGITQFDNILFAVLTVFQCITMEGWTDLLYNSNDASGNTWNWLYFI--PLIIIGSFFMLNLVLGVLS 360

HSP 2 Score: 37.3502 bits (85), Expect = 2.593e-53
Identity = 18/50 (36.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:   97 NPVRKIAFKISTSKLFDSFILLAIVVNCIMMAMSAPLPLNDTNELNNSIE 246
            N VRK A KI+    F+  IL  I+ NCI++A+   LP +D   ++  ++
Sbjct:   85 NVVRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPDDDKTPMSERLD 134

HSP 3 Score: 80.1073 bits (196), Expect = 1.936e-16
Identity = 58/195 (29.74%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:  246 EACVKMLTQGFILHAGSYIRNGWNLLDFTVVVTGILGLPSVG--MGENAGPMKVIKAARVLRPLKLVSGVPSLQIVMSAIIKSMASLLQISXXXXXXXXXXXXXXXXXXPGKFHYTCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDV 824
            E  +KM+  G +LH G+Y R+ WN+LDF VV   ++     G   G++   +K ++  RVLRPLK +  +P L+ V   ++ S+ ++  I ++    + IFA++ +    GKF + C   + E    E       L  E +      E     R W    F   ++DN+  A LT+FT  T EGW   +  ++D 
Sbjct: 1291 EMVIKMIDLGLVLHQGAYFRDLWNILDFIVVSGALVAFAFTGNSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF-FHCTDESKE---FEKDCRGKYLLYEKN------EVKARDREWKKYEF---HYDNVLWALLTLFTVSTGEGWPQVLKHSVDA 1472
The following BLAST results are available for this feature:
BLAST of TCONS_00020427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1A2.593e-5351.11Voltage-dependent P/Q-type calcium channel subunit... [more]
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