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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020412 ID=TCONS_00020412|Name=TCONS_00020412|organism=Clytia hemisphaerica|type=transcript|length=1202bp
TTGCGATAATTGTCTACTTTGAAAGGATAAGTAAATATTATTGaagacat
ttttattttgatacgAGGAAACAATACTGTTGttagaaagttgttttttc
ttttggttGGTTTCGTCCTGGCTTTACTAAAGATAAACCAATCATTTTGT
TCTTTAGGTGACGGATAGTTGTGTTTATCTGCCTCTTGGGTGGGTTGGGA
TAGTTTTGAAAGTCAGTTTCTCGTTTCACAATGATTTTCGTTCGAAACGT
TTTTAGGGGTTTTAAGCCATTTTGAAGGGAGAAActtaaaaatcatattt
cttattctttattttatagtgaatagataggaataataagcaCACACCAT
GCTGGATGGATGTTTCTGATTGGTCAGAATGAGACTTCAAAACAATCCTT
TACTTTATCCAATCATTTGCCTCCTTCTCTCTACACCGCCTGATGTTTCT
TCCAAAAAATTTCCCAAACTGGATTTATCAGTACTGTGTTCAGACAAGAT
GAAAAATAAGATCGTCAACCAGAGGAAACTTTGTCTATTTTacgaaaaaa
caacatcaaagaCAATCATGGAAACTCCAAAGACATCACAAATCAGATCA
ACAGAGATTCTACCGACCATCAAAACCGTTAAACCTGAAATTTCAACCGA
AAAATACATTATAACTGAAAAACCATTAATAAATACACGGCAAAGCACTA
AAATGGCAACAAATTCTAACGAAAAGACTTTCACATTGCCTACACCAGTG
GAAAATTCTATATATAAAACTCCAACACCAAAAACTTCTAAAATAAGCAC
TTCAACAAAAAGTGCTGATAGTTTAAAAGCAACAAATAGACTAGCTACTC
GAAGCACTTCAAGCTCAACGACGAAATTGAGAACTAAACCAGAGGAAAAG
CCTACCAGAACTACTCCTGATGATGGACTATTGAACAATGAAGTCGAGCA
GACTCAAAATGCCAATATCAAGCGATCCGCATCGTACAACTCCAGCGGGA
CAGCGCTGGGATTCTCGGTAGCACAGCTCACAAGTTATGTTTTCTTACTG
GTATTTTGTTTGACCTTATTTATGTAAATATTATGTTTcctattgtatat
tttttatgtttcgtTATCTGAAGAAGAATCACATGTTTTATATGTAAAGT
AAAGACACCAAAGTAAAAATTACTATCGCTGCAAATTTTGCTTCATCTTT
TC Run BLAST on NCBI protein sequence of TCONS_00020412-protein >TCONS_00020412-protein ID=TCONS_00020412-protein|Name=TCONS_00020412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MRLQNNPLLYPIICLLLSTPPDVSSKKFPKLDLSVLCSDKMKNKIVNQRK
LCLFYEKTTSKTIMETPKTSQIRSTEILPTIKTVKPEISTEKYIITEKPL
INTRQSTKMATNSNEKTFTLPTPVENSIYKTPTPKTSKISTSTKSADSLK
ATNRLATRSTSSSTTKLRTKPEEKPTRTTPDDGLLNNEVEQTQNANIKRS
ASYNSSGTALGFSVAQLTSYVFLLVFCLTLFM Run BLAST on NCBI transcript from alignment at sc0000356:209080..211154+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020412 ID=TCONS_00020412|Name=TCONS_00020412|organism=Clytia hemisphaerica|type=transcript|length=2075bp|location=Sequence derived from alignment at sc0000356:209080..211154+ (Clytia hemisphaerica)
TTGCGATAATTGTCTACTTTGAAAGGATAAGTAAATATTATTGaagacat
ttttattttgatacgAGGAAACAATACTGTTGttagaaagttgttttttc
ttttggttGGTTTCGTCCTGGCTTTACTAAAGATAAACCAATCATTTTGT
TCTTTAGGTGACGGATAGTTGTGTTTATCTGCCTCTTGGGTGGGTTGGGA
TAGTTTTGAAAGTCAGTTTCTCGTTTCACAATGATTTTCGTTCGAAACGT
TTTTAGGGGTTTTAAGCCATTTTGAAGGGAGAAActtaaaaatcatattt
cttattctttattttatagtgaatagataggaataataagcaCACACCAT
GCTGGATGGATGTTTCTGATTGGTCAGAATGAGACTTCAAAACAATCCTT
TACTTTATCCAATCATTTGCCTCCTTCTCTCTACACCGCCTGATGTTTCT
TCCAAAAAATGTAAGTCGAAATCATTAACACAGCCTTGTCTCAGTGACTT
GGTGAGGGTGGTGCTcacacgttcttttataagaacatccaatatttttg
aagccttggttgttcttaacattttttagttttaagcctaaaaatgctct
taacatgtttttattttcgccattttttgagNCTTCTCTCTACACCACCT
GATGTTTCTTCCAAAAAATGTAAGTCGAAATCATTAACACAGCCTTGTCT
CAGTGACTTGGTGAGGGTGGTGCTcacacgttcttttataagaacatcca
atatttttgaagccttggttgttcttaacattttttagttttaagcctaa
aaatgctcttaacatgtttttattttcgccattttttgagtaattttttt
atcggtattttagagtccgcaaagccttaaaatgtttttaacttgttctt
acaTAATTGACCATCTAAGCCTTgcgttcttatatagtttgttcttataa
agaaaaaacgtgtaatagagGGGGCAATGTCAGTACTCTTTTGCTTTTAT
AACAAGTGAGATGAAACGAAGGAACTAAATGCTGTGACGGAACTAGAAAA
TCTCTTACTTTTAGTGGTTTGGGTTTTATATTTCATTGTTTACGGATCAG
AAATCAAGTGGAAATTCTGAAACTTTCCTTATCTTCAAAGTGAGGAGCTC
GGTGTTAGTTTCGAAGAGAAATAAAATGTGTTGCATTTAGAATGTCGATG
TTCGGCCAATTAAAGCTTATACGTTTATGCTTGTAAAACGTGTGTCGGAC
AAAGTCCCCTTCTCTACGAAACCTCTGGAAACCTTTCTTTCTTAATGTCT
TTCGTTAATAAtatattttattctatttttcagTTCCCAAACTGGATTTA
TCAGTACTGTGTTCAGACAAGATGAAAAATAAGATCGTCAACCAGAGGAA
ACTTTGTCTATTTTacgaaaaaacaacatcaaagaCAATCATGGAAACTC
CAAAGACATCACAAATCAGATCAACAGAGATTCTACCGACCATCAAAACC
GTTAAACCTGAAATTTCAACCGAAAAATACATTATAACTGAAAAACCATT
AATAAATACACGGCAAAGCACTAAAATGGCAACAAATTCTAACGAAAAGA
CTTTCACATTGCCTACACCAGTGGAAAATTCTATATATAAAACTCCAACA
CCAAAAACTTCTAAAATAAGCACTTCAACAAAAAGTGCTGATAGTTTAAA
AGCAACAAATAGACTAGCTACTCGAAGCACTTCAAGCTCAACGACGAAAT
TGAGAACTAAACCAGAGGAAAAGCCTACCAGAACTACTCCTGATGATGGA
CTATTGAACAATGAAGTCGAGCAGACTCAAAATGCCAATATCAAGCGATC
CGCATCGTACAACTCCAGCGGGACAGCGCTGGGATTCTCGGTAGCACAGC
TCACAAGTTATGTTTTCTTACTGGTATTTTGTTTGACCTTATTTATGTAA
ATATTATGTTTcctattgtatattttttatgtttcgtTATCTGAAGAAGA
ATCACATGTTTTATATGTAAAGTAAAGACACCAAAGTAAAAATTACTATC
GCTGCAAATTTTGCTTCATCTTTTC Coding sequence (CDS) from alignment at sc0000356:209080..211154+ >TCONS_00020412 ID=TCONS_00020412|Name=TCONS_00020412|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000356:209080..211154+ (Clytia hemisphaerica)
ATGAGACTTCAAAACAATCCTTTACTTTATCCAATCATTTGCCTCCTTCT
CTCTACACCGCCTGATGTTTCTTCCAAAAAATTTCCCAAACTGGATTTAT
CAGTACTGTGTTCAGACAAGATGAAAAATAAGATCGTCAACCAGAGGAAA
CTTTGTCTATTTTacgaaaaaacaacatcaaagaCAATCATGGAAACTCC
AAAGACATCACAAATCAGATCAACAGAGATTCTACCGACCATCAAAACCG
TTAAACCTGAAATTTCAACCGAAAAATACATTATAACTGAAAAACCATTA
ATAAATACACGGCAAAGCACTAAAATGGCAACAAATTCTAACGAAAAGAC
TTTCACATTGCCTACACCAGTGGAAAATTCTATATATAAAACTCCAACAC
CAAAAACTTCTAAAATAAGCACTTCAACAAAAAGTGCTGATAGTTTAAAA
GCAACAAATAGACTAGCTACTCGAAGCACTTCAAGCTCAACGACGAAATT
GAGAACTAAACCAGAGGAAAAGCCTACCAGAACTACTCCTGATGATGGAC
TATTGAACAATGAAGTCGAGCAGACTCAAAATGCCAATATCAAGCGATCC
GCATCGTACAACTCCAGCGGGACAGCGCTGGGATTCTCGGTAGCACAGCT
CACAAGTTATGTTTTCTTACTGGTATTTTGTTTGACCTTATTTATGTAAA
TGAGACTTCAAAACAATCCTTTACTTTATCCAATCATTTGCCTCCTTCTC
TCTACACCGCCTGATGTTTCTTCCAAAAAATTTCCCAAACTGGATTTATC
AGTACTGTGTTCAGACAAGATGAAAAATAAGATCGTCAACCAGAGGAAAC
TTTGTCTATTTTacgaaaaaacaacatcaaagaCAATCATGGAAACTCCA
AAGACATCACAAATCAGATCAACAGAGATTCTACCGACCATCAAAACCGT
TAAACCTGAAATTTCAACCGAAAAATACATTATAACTGAAAAACCATTAA
TAAATACACGGCAAAGCACTAAAATGGCAACAAATTCTAACGAAAAGACT
TTCACATTGCCTACACCAGTGGAAAATTCTATATATAAAACTCCAACACC
AAAAACTTCTAAAATAAGCACTTCAACAAAAAGTGCTGATAGTTTAAAAG
CAACAAATAGACTAGCTACTCGAAGCACTTCAAGCTCAACGACGAAATTG
AGAACTAAACCAGAGGAAAAGCCTACCAGAACTACTCCTGATGATGGACT
ATTGAACAATGAAGTCGAGCAGACTCAAAATGCCAATATCAAGCGATCCG
CATCGTACAACTCCAGCGGGACAGCGCTGGGATTCTCGGTAGCACAGCTC
ACAAGTTATGTTTTCTTACTGGTATTTTGTTTGACCTTATTTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020412-exon-sc0000356-1491911889:209080..209539 | TCONS_00020412-exon-sc0000356-1491911889:209080..209539 | Clytia hemisphaerica | exon |
| TCONS_00020412-exon-sc0000356-1510915933:209080..209539 | TCONS_00020412-exon-sc0000356-1510915933:209080..209539 | Clytia hemisphaerica | exon |
| TCONS_00020412-exon-sc0000356-1575043694:209080..209539 | TCONS_00020412-exon-sc0000356-1575043694:209080..209539 | Clytia hemisphaerica | exon |
| TCONS_00020412-exon-sc0000356-1491911889:210413..211154 | TCONS_00020412-exon-sc0000356-1491911889:210413..211154 | Clytia hemisphaerica | exon |
| TCONS_00020412-exon-sc0000356-1510915933:210413..211154 | TCONS_00020412-exon-sc0000356-1510915933:210413..211154 | Clytia hemisphaerica | exon |
| TCONS_00020412-exon-sc0000356-1575043694:210413..211154 | TCONS_00020412-exon-sc0000356-1575043694:210413..211154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:209080..211154 + |
Blast
The following BLAST results are available for this feature:
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