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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020410 ID=TCONS_00020410|Name=TCONS_00020410|organism=Clytia hemisphaerica|type=transcript|length=1899bp
GTTCTCTAAAAAGATGGTATATAGATCcagtatatatttttggaaagtca
ATTTGagAGCTGAATAAATAATTCACCTAAATGTTCCGATACTTCGTTTA
TATGTCCGTCTATTTCTCTTCATTTGATTGGTCAATACAAAGACACATTG
TCGTGGCTTCAATCACAACACAGTCGACTACAAATACACCTTGGAACACT
GAGGGTTGTGATGTCGATTGGTACCGCTTCAAGGAATCTTGTTATCTTCC
TTACAAGCAAGAACAATACCACAATGACGCCTCCAAAATCTGTCAGAAAC
ACTCCGCTACTTTAGCTACCATTATGGATGAACAGGAAAACCAATTCATA
AAAGCATTAGCCAATCAATTCTTGAGTTACGGTGAAAGCTGGCTGGGATT
GGTTCGTTCCGAAAGACTGGGTACTACTTTCACATGGGCAGATGGTCAAC
AAGTGAGCTATGAGAGATGGATGTTTAATAAGCCTTCGATTGGTGATGGA
GATTGCGTACAATTGATCAGTAGTGGGTTCTGGACGAACATCAATTGTTA
CAATCGATTCTCTTTCATTTGCAAAAAAGATAAGAACCTTCCACCAGCAG
AAGATAACCTGGATTTAATCTTGAACATTTCGATACCTCTATCGTGTGTC
TTCATCATGTTTTGTTTTGTGGCATTCCTTTGTTTCAAGAGTTACAAAGA
ATTACAGGAAATAAAACAAGACAATTTAGACGGAAAGCCGTTCGAGCTTA
TCCAAGCTGCAATGATACTACCGATCACCAAAACTCCTGATTTGTTGACT
TCGAATGGTAAGAATCTCTGGAAAAGCGCATTGGAGCGTTTAAAAGCAGA
ACAGATCAAGAATAACCCGTTAAACGAACCACATACATTCTTAGCTCGAG
GTTCTTTGAGTAGTATAGTCGACGCAGCTCGAAAGAATGGACAGATTGGC
GGCAATAGGGCGGCAAATATGAACACGGATAATTCATTCGCTGATATTGT
GAATAGTTTGATGTCAAAAAGACGCGATACAACATTCCAAGGTGGTTTGA
TGGGCTTCCCAATTATTGAGAATCCGAATGTTCCAAAGATAGCAGTAGAC
TCACCAGAACATGATAAACTGAATAAAGATATATCTCAAAGCACTAACAA
CTCAAGACAAGAGACTGATCCGAATTTCGATTTTAGTTCAAATGCATCTA
CCGAAAGCCTGGACTCTAATCATAACCCGAAACCTAGAGATCAGAGTTAT
TCGTCTGATGACAATAGTGCTGATGAGAACACTGATACTCTTAAAAATCA
TCAGTCAAAATCTTATAAATCGAATTCGAAAAGGTTTGTCGAAGTTGTTG
TCGAATTATATGATGTTCATGAGAAATTAAAACATAAAACCACCACCAGT
GTTAAGAGGAGAGAAAGTCACGGAAACGGTTGTCCGAACCCGAATCacga
aaaaagaaattacagaccagataaTAAGCGAAATTCTGTAAACTCGATAC
AAGACACTAAGTGTAAACGAGAGTCTGTAAATTGTACACCAGATACGAAA
CGAGTTTCGCTTAACTCTAAACCAAACGATCATAGAGATTCTGTATTTTA
CCGACCAGATATTGTGCCAAACACAACAAAACCAAGACCGAGTCAAAATT
CGACAAGTTCGATAGGCACTAGCGATTCAAATAGCTCTCTGTCAAACGAT
GGAACGAACTCAGATATCTTAAGTACCAAACAATTTAGAGATTCGATACG
CAAAGAAtctgagaaaagaaaagaacaatatTTTCCGAATTCTCCGGAAA
AGAAACTTCCTCCGGTAGATTATAATTCGATACCGTTTAAATCGAACGTT
GCTGATTATACGACTGTAACTTTAGTATGATTATGCTTAGTaccttagc Run BLAST on NCBI transcript from alignment at sc0000356:175278..188986+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020410 ID=TCONS_00020410|Name=TCONS_00020410|organism=Clytia hemisphaerica|type=transcript|length=13709bp|location=Sequence derived from alignment at sc0000356:175278..188986+ (Clytia hemisphaerica)
GTTCTCTAAAAAGATGGTATATAGATCcagtatatatttttggaaagtca
ATTTGGTAATCATTTATTAAACTCCGGTTAAGGAGTTTCTTAAAAccaat
gtttttcatttgtaattgtgcgtaaatccGATCAATCGTCGggttcgatt
tcccgatctttccggcttgatttcccgatttggtttacgtttgcgctcgc
acttactaggatatactcttttaaattttatgttagatatattaagaaag
gctgaccCATGACAATATTATCAGAGTTTGCAGCCGTCATTACAGCTGTT
TTATTCTCTACTACTATTACAGGGAGTCCCGGAAAAAGTCCTGTCTTAGA
ACACTACTACAAGTAGAAACAGTTTTGTATGTGTATGTCTAATTTCTCAA
TGTTTAGTCTCAGGCCTCGTAAATCTACGAATATACcttaaagaagaaat
tttggcgaatgagccCATTTGCCAACTTTGGTGCAATTTGGCGGAATTTG
TTTTGGcgattttataaaatttctaaatttggcgagatttaattttggcg
aatgacccattttgttcaatattttagctgaaaaaagaggaaaaaaggtt
tttaggagaaatagagattaaattaaaagaaaattaaatttggcgagaat
tctttttggcgaatgacctatGAACTTAAATTTGGTGGaaggaaattttg
gcgaatttggcgaatttggcgaaatttttagtcaattcgccaaaatttct
ttccgccaaaatttcttaccTTAAAGTACTATTAATTCTAATCAAATTTA
AAGGTTGAAAGAGGTTTTGGATAGATAGAAAAAGCTGACttgctgatttt
tttttctttttgataaatcCAACTGACGGAATTTCTCAGCTAGACGAAGA
ATAGGTGTGAAAAAAGTGAAGcaggaaatcaaaaatttcatagttataaa
tataaagTGAATATATAATAATAGAAGATATGCAAAAATAGTAGTTGTta
aaaagagataatattgttCTTCATTAACATTCTTTCgacaatttttctat
tttggtttcTTAGCAGTTATCTCAGCGAGATCATATTTCTTGGTAAAAAC
TGTTAAGCAAAGAACACTTACATTAGAAGGGTATCTTACCAGTAATACTA
TGGTTGTTCTGTTAATAAGAGAATTAAGTTCTGATTTTGACAATATTCGG
TAGGGATAAaagtttgttgaattttttgacGACGTGCTCAAGCCAACATT
GAAATCATCGATATGTCATTGTCAAAGTAAGGTATTCTAACATATTTATC
ATTTTGCTGAATAATTTAATGGCATTCAAACAGACAAATTCAGTCAGAAA
ATAAATAGTTTTTAGTGAACTATTCAAAGGGCTTGGACTTGGAACAAGCA
CCAGGTTGATTAGGTCTACGAACGCTGTGATATATCAAATCTTCGATAGT
GAAAAATAGatcaaattcaataaatatTTAGTCTAGTCGTTATGTTAATT
GCTGTTCAGGTCtcgttcttttttaaatatagcaAAAGTAGACCTTAACA
AACGTAATTGCCAGAATACTTGGTTTAAAATGCAAAATAAAAGATCTGGC
GACCTATTCATCCACCAGTTTACGTGTTGGAAAGGTATGGTTATTTACAA
TGACTGTCATGATTACCGCAGCCTTTATGGAGTGCGAAGATACAGCAACA
CGGTATATCATTGATCCTTTGCTGAATACAAAGCTagagaaagaaattaa
aattggTGAACTCTGGACACAATATAGAACTGAACTCGGctccaaacaac
aaaattaaaaGTTGGGTAAACAGTCGACTGAGGGCATTTGTACATTGCAA
GCTTTACTTCTTCTTTATTCTGCCAGAGCAGATTAAGAATATATGAACTG
AACTGaagaaaaaccccaaaaatCAGCTCACCTTCCAACACCAACGTGTT
GAACGAATTATCATGGAGAACAAGAGATCACCAATCATTTGATTGTTCAT
TCGTGAAAATCAAGCACTTATttcaagaagattttttttcaactcaTTTG
GATTATGCGAGCAATGGTTCTAAGGTGAGGCAAACTATCAAGAGTATAAT
TAAGGCGGGTTGTAGCAAGAGTGTAAGACGTGGTGCATAACCTCCGCTAG
TACTAACTTCTTTACAGTAATGCAtcttttaaatatattttaaccctatt
agccccagggggggtagaatctaccacgctggagttcttttgtttatatc
tcggagaaaaatttttcaaacgacttgaaactttctgactttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTAGGTTGtctagatcaggttttatgactttattgtg
aaacatgacataaaacccagctaaaatcgcttaaaactcaaaattttaaa
gtgctgataacttctaaactttttattcaatcattttcaaattttgacac
gtgataggcattgataatacaaattaaaaaaatcaaaagaacatttttga
aaataatgacgtcatcatttatgacgtcatcaaattttgaaaattctact
catcttcagcatagactTTAAGAAGAATCCTTCATGCAAATtacaaaacc
ggcaattatgttaaagaacagttttttacctttcagaatcttcaaacaga
atcgaaatatctttattggttcgactgtaatagacatttttgtaaaccat
atatttgggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtggaaaattgtatcatgatggagaaca
tctgtaccaaatttcatggccatagctcttctagatcgaaaataatcgag
ggtggtagattctacccccctggggatacaaaagtcaaaaaagcttgggg
ctaatagggttaagctaAGAACCTTTGCGAGACGAGGATTATTTTACCCT
gagtttttgtaaaaataaatttacacaGGTTTAAAAAAAACCAAGGGGAG
TTCATTTAGTAATAAGAATTATGTGTATGAGAATTAATTGAATAGCCGAT
CAAAACGGATAATATGAAGCTTCATAAACGTTGTGAAAGATGAGTTTGAT
TAATCCCTTCCATTGATTAGGATGGTTCAATTGAATACTTAAATAAACAA
GCTGTATAATATGCCTAATATCTGTCAGCTATTATTATTGATGAAAACTT
CTCTATTGATACCGATAACTAAATGTCATACTGTTCCAGAGAATACAAGA
ATAATACCTATTGCAGCAGTACCCATTTTAAATCTATACAAAAAAATAGA
ATACATAATCAGAATAGCTTACCTTCTCATGTAAATCAATATCTTTGCTA
ATGAATCAATCTTACCACACAATCTTCAACGAGTGTCATTCGATCAACAT
GGCAGAACAAAATGACCAAGATGCGGTGGATATAAAGTTTATAACCATTA
ATGGCAAAAGCTCTTTTGGTGACCAGGAAAGATTTAGAAAAGCATACGTT
TCGAAATTGAACGATCATAACCCTGACGTCGTTTTTCTCCAGGAGATTTC
TATGTTGAAGGTTTATGAAAATGACCCATGGTGGTACGGGTTAAATATGT
ATAACATTAACACAAGTAAAGACAAAACAGGAAGCATCAGTTCCGAAGCT
ACAGCTCTAGTAAGACATGGTAtatatgaaaaatttgaatataaccACCA
GGGAGAGAGATTTGCATCTGTGAAGTTCAATATTGGTGGCAGAACTTTAA
ACGTTACATCTTTTCATGGAAAAAATACTACAGCGAAAAAGGACGAAAAG
CAAATAGCAGTTATGAAGATTTTACGGGATCTTCATGAAAAGGGAAATTT
TGTCATTGGTGGAGATTTCAAtgtgaataaaaaaaagttgatctCATGGA
TTAGAGAACTAACGAACCCTACAGAATTCAAAATAAGTGGGGAATGTTAC
ACTTGTCCAACCGACTGCGAAACGGGGAATTGCAAGAACATTGACTACTT
TGTTTATGGAGGAGCTATTGAGGTAATTGAAGCTGAGTCCGGAATGGATA
TGTACTTCGATAAAACGTGCTTGAGAGCAGAGTTAGAAGGAAATGGAAAC
AAGCTGGAAATAGGGGTAATCGATACAGGAAATGATACCCGGCCTTTTAT
TTTCCCTATTTTGAATGGAAAACAAATGAAGGATTTTAATGGTGCATTTG
GTGATGTTTATTTTGATTCTTTTCACATTAAAGATGAAACAACAAAAGCC
GTTAAAAGCATCATTAATCGGGCTTGTGAAGATGATAAAGCATTTGTCAT
TGGTGGAAGTTGTAAGCTTACTCAGAAGCAATTACAAAACATCATCAATG
AAATAAATCGCAAGTCTATTGCTATAGGTGCTACTAAAAGCCCCGCTGAC
AGTACCACATCAAGCAGCACGCAAACTGCTACAACTGCTGctgctgcttc
tacaagcatcACTACCGGTACTACTGCTGCGCCAAGTACCTCATTAAGCA
CAGCAACTATCACACAAGTTCCAGGTTCTACAactgatgctgcttctaca
agcatcACTACCGGTACTACTGCTGCGCCAAGTACCTCATTAAGCAGCAC
AATTAACACGCAAGTTCCAGCTGCTGCAACTGCTGCTGCTGCTTCTGCAA
GCACCACCGCTGATACTACTCCTGGACCAAGTACCTCATCAAGCACAGCA
ACTATCACACAAGTTCCAGCTTCTACAGctgatgctgcttctacaagcat
cACTACCGGTACTACTGCTGCGCCAAGTACCTCATCAAGCAGCACAACTA
TAATACAAGTTCCAGGTTCTACAACTGCTGTTGCTTCTGCAAGCACCACG
AGTACTACTGCTGATAATGCAACTGCAAACGACGAAccgttaaaaaaaat
taagcttGTGAAAACCACTACAGATAATCCAAAGATTAAATTGAGTAAAC
TAAGCGATTTCTTCGTCTATAGAGGAACTGGCTTATCCATCAACAACCCA
AAAAGCTATCCTATTGAAAATAGTCACAGCGCAGAAACACATCAGccgaa
aattcttaaaattcgATTTACACAACGAAGTAATGGTAACGCAAATCCCA
CGCCAAAATTGCAAGCAGACGACGTTGTGAACGAAGCAGCCCCCAGCACC
AAAGATGATGCGGGAGAAGATGAAGGCACAAGTAAACAAACGAACGAAGA
TAATGGTGAAGACAacctttttgattttgatcagATTAACATTAAATGAT
AGCTTAAAggatgattgaaaaaaaaaaaagatttggacAGTTGGTATATT
TTGATACattgtttttgaaaagaaaaaaaacatataaatttggaaaaaca
aTTTCGAGTAGATCTGCAGTTTTTCTCAATTTACCAACAGAGGTTGAGCA
ATGATCGGTCGTTGCACAGAGAcatttttccaaagaaatttcaTAAGGTA
TAATAACAAAAGGAGATAATTGTAGCAAAAATAAATCCAGGAGTGAATTT
ATAGACAGAGAAATGATTTTTGACATATAATCGAAGTTgtgaaagtttct
tttttttcaaaagcttccATAGCTTTTTTTGAGTGAGAATCTTTGCTCGC
AAAATCTTTCCAGCGTAGGAGATTTTGACTGGTTTTTGATGTATGGTACT
TTTTCCAATGATAATAATTGTTTTAATTGATGTCGTTATCTTAATCAATT
CATTACATTAGTgtattttaaatataaaatctgtaaaatttgtTCTGTAT
ATACAATGTGGCGTGTGGAGAAAATTAATCAGTTGTTCATTAATCTTTTA
TCTATTGAGTATTAGTGACACCAAAACATCAACATTCCTTTgctgtacac
attttttataagcaactagGTTGTTAAAACTAGAGACTCAAATTTGGCAA
TTCTTTTTCACACCATATCTCAGAGTTCCGATGGAAAGTTTTTCCATAAC
AGGGATAAAATTTAatatcgaaatcccaataggGATAGAAATTTCTTGTT
CTAAGCTGAAaagatccagtggggatggttttgaagtgcaattttttaca
atgAATTTTGTATGGGATTTAATCAAactcaatttcccagtggggctaaa
aatTTGGGGTATTTTCAATACAGTGAgactggggtcccagtgggtctttg
acacaggggtgtcttttcactatctcgtaaagtaaaagatAACTTAGCCA
TTGCAAACAATAACCCTTTGCCCAATAAGCATAAAAATTATGTAATACAT
ATCAGGGATAATCGAAGCAAACCAAGAGCTGTCTCCAACAAAATCTTCAG
CAATTTGCAGTCTCATtattaatgtaaattttttaaatacacgctttttc
tctTAAAAGAACGGTgtttttcaattcatcatgaatattcttgaAATCCA
ATCCCAGCCAAAATTTAGCCTGTAATATTACCTCAAgcaaaaatttggca
tttttgttgaACCTTTTAGCATTGCTGGGTAATAGTTGCTAATTTAATGg
caaaatgctctaaaaatggtattcttatgttcagttgccaaattccatga
tggtggtattcttaccatattcctaatttttcggtcaattttatcataga
tattcttataaaaaacgtgtgatAAAGAGTGTAGTCTTAACTGGATGCCT
CCGGTGATACGGTCATGCATCTTCGACGCGTCTACCGGGAAAAGAACAAA
GCTATTCTCGTTTTAACTTGAAATAAGCTAGAATagagatttttcataag
aacgtccacactttttgaagccttcggatttttttgactttttgtgtttt
aagctcaaaaatgttcttaaatgtttttaatttcaccACTTTTTAAGTCT
TTAGGGTCATAAGGGCTTAATGttctaagaatttttttaaatattttggt
catcaaagccttacattcttttattattttttcttataaaaaaacaagca
aGGTTTTCCGATCGTAATCTATGGATCAAAGCTCAATTATCATTATTCCG
GGTattaaaattctttttaatcttgttgttcctataaaaagaacaagtaa
acaaaaacaaaaggttCAGTATTTTTAGAACAAacttgcgaaaaaagtga
cagaATGACCGGAAGAATCATTTTAAAGGATTGTAAATATTGAATGTAAT
TGTCGAGAGGTATACGAGTTCTTATTCAAAAGACGAGCGtgatgtgtttt
ttttcattttatataaaataataaatcaacCAGCGttgataaaaaaaagt
ttgatactttaAGTTTGTTCACGAACGTCAAACCTGTAAAGTattcatgg
tcgaaatatatttagattttttaggcattttgaaaaaacgttttttcgaa
ttcaaaattcGGGCGAGAATGACGATTTTAGCATTTGGACGTCATTTCAt
tggatattttgattttggaggGGCTGTATTTAGACTACAACTTTAAGGGT
AGAAACTTTGGCCCAGCCTTATCGGAGCATTCTTTGAGTTTGTAGATTCT
TAGAGGTTTTAAGTCTCTTACacgtttattttataaaaacattcaaaatt
tttgaaaccttcagatgttcttaatattttctctttgttcTTAACAGCAG
TTTTGTcgattttcctaagaaattgggtattttagagtctccaaagcctt
aaaatgttctaacttgttcttaacataattggccatcgaagccttatgtt
cttctaTAATTATTTGTTAATATAAAAGACGTGTATGCTAAAACTCAGAG
TATTCTTTAAGTAAAATAGAGCACTTCAAAATCATTTgtgctttttataa
ttttgcaTGGAATTCTCCCCTTTCTCTCAAACGTAATAACCATGATTGTA
GACAGGGGAGATAAACCGAAGAAACTATGATTTTAGCGCGATCTGACGCT
CTCCCTACTGTAGTGATGCTGTTTACGAGCAGCCAGAACCTTTTAGAAAT
CAGATTTTCTAAAAGTTCTGAAGGCCGATAGTAAACAAAATTTGACCGTT
GCTAAACTACTAAACCGCTCGTTATACCGAACGAAGAGCGGTCCGATATT
CAGGTACAGTAAATCGCTTGGGAAGTCAAAGGTCGTTGATACTATAGACA
GAATTTCAAAGTTCGTCCATCAGGGTTCAGTttgtctgaaaaaaaatcac
agttAAGATACTTTCAAGTGTATATGTATTCTTACAAAAAGCATGCAATT
AGTTAAGTTGTGTATTTGTAAatctcaaaaagaaaacttgTGATCTAGAG
CTCTGTTTCTATGATTTAACATGTAGAGGAAGTGGTTATAATTGTTCTGG
CGTGGCCAATTAAGTTCTTGTGATCACACAGCtatttcaatttctttcct
CTTGAAGATTGTATTACTTTGCAGCTATACAACTTCAAAGAGTGTTGCCG
CTATTTTTGCGATAATTGCATTGATATTAGGTTCTGAGCAGAATTTTGTT
CGTTtgaggtctttttttaattcaaaaatgaaattgaattcgAGCGCAAA
GGAGAAGCAAAGTTTGAGATATAGAGTGGTGAAGACTATATAATTTTCTC
AGAAGTCAAGGATAGATCGTTCGACCTACATAATGAAAGTAAGATTTCGC
CCAGGTTAGGTTAGCTTGACACTTTCAGCGACTTTGTCGAATaatgaaaa
gaacaaacttttttctttaaacacGTGTTATTTCGTTGCTTTTGATGCTT
TCGATACACGAACCATCAATAAGTTTGCAAGATGTTGCTCAAAAGTtggg
gaaaagtttttttgcgatCCTATGAAAAgctatttttgatgaaaacttCA
ATAAAGTAATAGAGCAATAAGCCATATATACGAGAGGGAACTCTGTTCAA
AACCTTGTCAAGGTCCTACAAAATCTGGTAGGATCCTGCGATATCTTGTT
ATACCTCAGATATTGCGAGTTCTTATTTGAACGGAAATTTAATTATAACA
CTCGAGTAACTCGAATCCGCACGGAGTACACAATAAATTTGTTCCATTTA
ACgaaatttcgatttagagagtaAAGTGTATTGTTGAATGACGGGACGAG
AAaagttgttcgagttaaggagacattcaagttgtagaggttcaagttaa
agagactctactgtaataCGGACCTACAGTTAATTTCCCCTGTTTTAGAA
GGTCATTATGTCAAGGATGCCTAAAAAAATGGGTCGTCTACTCGAAGTAA
TGACCATACTTAAAActgacttcttttttttctagagAGCTGAATAAATA
ATTCACCTAAATGTTCCGATACTTCGTTTATATGTCCGTCTATTTCTCTT
CATTTGATTGGTCAATACAAAGACACATTGTCGTGGCTTCAATCACAACA
CAGTCGACTACAAATACACCTTGGAACACTGAGGGTAAGTTATTAAAGTA
GGAGCAGGGGGAGAAAGTGCAAATTTCATCAGCAAATTTCATCATCAACC
ACCCCGACCGAAAGTTATTATACCACCCCTacgtattcattcctctttgt
gtTTTGCGTATAATAACGACAAACAGTTTATAAATACGCATgcgttttaa
ttttgttttgaaaatgaaacaatagatgcgAAGTAGACACTTTCTCTGTG
GTAGGGTAAATTGGCTTTTTCTAAACCAAAATTACCATAACGTGTAACAA
TGAACATCTCCCAATTTATCTAAAACGGTTTCTAGCTGAGAATGGCGGAA
GTTACTTGGTATGCTAAATGCGATAGGTACCAATTATGCGCGAACGGTAA
AGGTATCTATTTTCATATCTCATAATAAATCTATGTAAAAGTTACAGAAA
CCAAATCACTAAACTTGGGGAACATCTCCTTAATAAACGCCTAAAGCTGT
TAAAGAATATCGATTTTTGATTTGAGGCAAGACTGGGGGATACCCGTCAT
CTTCAAAGCCAACAATATTTGGTAATTTGACTTCAAAAGACTGATTTCAA
TCAATTTAAGAGACATTGGATACATTATACTCAATTTGATATTTTGCAAC
AAGCAGGTCCTTTTAAAAATGTACCCTCTAAAAGCGATACAAACATGATG
CTCAAGTCTCGACTCTTTTCGGAAGATCTTTGTAACTGAAGAAGctaatc
aaatttcagaaaacactAAAACTTTTGACCAATGGATTTTAACAACCCAA
Aatctaccctgagtatcagaggttaagttttcaaagaaaatagtaacctc
tgaagacaaataatagaaattttatcgcgcatgtgtcaatctaatcactg
tagaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNacttttgtcttcgctgattgcgcgatgaatagaat
ctcgattcgtcggcacagcgtaaatatatgattttgagctgtgcttttca
cggtacccAAAATCCTAAAAgacaaaatacaaaacaaaccaaattcCGCT
AGAGACACATTTACTAGAACaattaaaacaaatttagcGAATAGGAACcc
aatattcaaaatgaaaagagATCTAAACggaaagaaaatggaaaaattat
gaaaagatAAAGACCGAAGTCTGAGATCAGGTGCGGTACCTAGTGTAAGC
ATCCCCTGCCACCCGCGAGTCACCCGTCATTTTCCTGAAAGAAAAGGAGT
AGTGTTGTACAACCATGCCTAAAAGATTAAATTAATTTCAGCCTTCTACC
AAATTCTAGGTTGTGATGTCGATTGGTACCGCTTCAAGGAATCTTGTTAT
CTTCCTTACAAGCAAGAACAATACCACAATGACGCCTCCAAAATCTGTCA
GAAACACTCCGCTACTTTAGCTACCATTATGGATGAACAGGAAAACCAAT
TCATAAAAGCATTAGCCAATCAATTCTTGAGTTACGGTGAAAGCTGGCTG
GGATTGGTTCGTTCCGAAAGACTGGGTACTACTTTCACATGGGCAGATGG
TCAACAAGTGAGCTATGAGAGATGGATGTTTAATAAGCCTTCGATTGGTG
ATGGAGATTGCGTACAATTGATCAGTAGTGGGTTCTGGACGAACATCAAT
TGTTACAATCGATTCTCTTTCATTTGCAAAAAAGGTAAGTAGCGGTACGG
CAGATTTTCCGTCAGCGGACGGAAGCTAGTTTAACTGACCCTAACTTATC
TATCAGGTATTCGGCCGGTGACttgctaaatcaggtcttcggccgttaaa
tcCGGTCTTCCgctgagagaaaaaaatttacagcGCTACGCTATCATATC
TGTTCTAATGTGTATCTAAGGTAAACTTGAGAACTTTTGAATGAGAACTC
TCGCTTACTTAGACGAATTTCCATTCTCTGAAAAACCCGAAAAATGATGG
CATGTGAAATTTAGTTTGCAGTACCAAGTACCAAGGGAATAGCACAAATA
CCTTAATATTAGCAGTAACCACTAAATGGAGGGCTGAAGTGAGATTCGAA
ATCACCACTAGTGATTTTggatacaaaacaaaaacaattattttaacCCT
TTTCCtgctaaaaaatgtttttcctctttttgtCTACAGATAAGAACCTT
CCACCAGCAGAAGATAACCTGGATTTAATCTTGAACATTTCGATACCTCT
ATCGTGTGTCTTCATCATGTTTTGTTTTGTGGCATTCCTTTGTTTCAAGA
GTTACAAAGAATTACAGGAAATAAAACAAGACAATTTAGACGGAAAGCCG
TTCGAGCTTATCCAAGCTGCAATGATACTACCGATCACCAAAACTCCTGA
TTTGTTGACTTCGAATGGTAAGAATCTCTGGAAAAGCGCATTGGAGCGTT
TAAAAGCAGAACAGATCAAGAATAACCCGTTAAACGAACCACATACATTC
TTAGCTCGAGGTTCTTTGAGTAGTATAGTCGACGCAGCTCGAAAGAATGG
ACAGATTGGCGGCAATAGGGCGGCAAATATGAACACGGATAATTCATTCG
CTGATATTGTGAATAGTTTGATGTCAAAAAGACGCGATACAACATTCCAA
GGTGGTTTGATGGGCTTCCCAATTATTGAGAATCCGAATGTTCCAAAGAT
AGCAGTAGACTCACCAGAACATGATAAACTGAATAAAGATATATCTCAAA
GCACTAACAACTCAAGACAAGAGACTGATCCGAATTTCGATTTTAGTTCA
AATGCATCTACCGAAAGCCTGGACTCTAATCATAACCCGAAACCTAGAGA
TCAGAGTTATTCGTCTGATGACAATAGTGCTGATGAGAACACTGATACTC
TTAAAAATCATCAGTCAAAATCTTATAAATCGAATTCGAAAAGGTTTGTC
GAAGTTGTTGTCGAATTATATGATGTTCATGAGAAATTAAAACATAAAAC
CACCACCAGTGTTAAGAGGAGAGAAAGTCACGGAAACGGTTGTCCGAACC
CGAATCacgaaaaaagaaattacagaccagataaTAAGCGAAATTCTGTA
AACTCGATACAAGACACTAAGTGTAAACGAGAGTCTGTAAATTGTACACC
AGATACGAAACGAGTTTCGCTTAACTCTAAACCAAACGATCATAGAGATT
CTGTATTTTACCGACCAGATATTGTGCCAAACACAACAAAACCAAGACCG
AGTCAAAATTCGACAAGTTCGATAGGCACTAGCGATTCAAATAGCTCTCT
GTCAAACGATGGAACGAACTCAGATATCTTAAGTACCAAACAATTTAGAG
ATTCGATACGCAAAGAAtctgagaaaagaaaagaacaatatTTTCCGAAT
TCTCCGGAAAAGAAACTTCCTCCGGTAGATTATAATTCGATACCGTTTAA
ATCGAACGTTGCTGATTATACGACTGTAACTTTAGTATGATTATGCTTAG
Taccttagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020410-exon-sc0000356-1491911889:175278..175332 | TCONS_00020410-exon-sc0000356-1491911889:175278..175332 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1510915933:175278..175332 | TCONS_00020410-exon-sc0000356-1510915933:175278..175332 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1575043694:175278..175332 | TCONS_00020410-exon-sc0000356-1575043694:175278..175332 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1491911889:184913..185061 | TCONS_00020410-exon-sc0000356-1491911889:184913..185061 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1510915933:184913..185061 | TCONS_00020410-exon-sc0000356-1510915933:184913..185061 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1575043694:184913..185061 | TCONS_00020410-exon-sc0000356-1575043694:184913..185061 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1491911889:186837..187211 | TCONS_00020410-exon-sc0000356-1491911889:186837..187211 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1510915933:186837..187211 | TCONS_00020410-exon-sc0000356-1510915933:186837..187211 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1575043694:186837..187211 | TCONS_00020410-exon-sc0000356-1575043694:186837..187211 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1491911889:187667..188986 | TCONS_00020410-exon-sc0000356-1491911889:187667..188986 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1510915933:187667..188986 | TCONS_00020410-exon-sc0000356-1510915933:187667..188986 | Clytia hemisphaerica | exon |
| TCONS_00020410-exon-sc0000356-1575043694:187667..188986 | TCONS_00020410-exon-sc0000356-1575043694:187667..188986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:175278..188986 + |
Blast
BLAST of TCONS_00020410 vs. Swiss-Prot (Human)
Match: NCAN (Neurocan core protein OS=Homo sapiens GN=NCAN PE=1 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 8.700e-17 Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = 3
Query: 201 EGCDVDWYRFKESCYLPYKQEQYHNDASKICQKHSATLATIMDEQENQFIKALANQFLSYGESWLGLVRSERLGTTFTWADGQQVSYERWMFNKPS---IGDGDCVQLIS--SGFWTNINCYNRFSFICKKDKNL---PPAEDNLDLI 620
EGCD W++F+ CY + + DA K C++ S L ++ +E+ FI + ++ +W+GL + F W D + +E W N+P G DCV +++ SG W ++ C ++CKK L PPA +N LI
Sbjct: 1086 EGCDRGWHKFQGHCYRYFAHRRAWEDAEKDCRRRSGHLTSVHSPEEHSFINSFGHE-----NTWIGL-NDRIVERDFQWTDNTGLQFENWRENQPDNFFAGGEDCVVMVAHESGRWNDVPCNYNLPYVCKKGTVLCGPPPAVENASLI 1227
The following BLAST results are available for this feature:
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