TCONS_00020400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020400
Unique NameTCONS_00020400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020400 ID=TCONS_00020400|Name=TCONS_00020400|organism=Clytia hemisphaerica|type=transcript|length=268bp
ATTTGATAGAAAGTCATTATCTTTTTCAATTTAAGATACTGCCAAAAgac
aaatattcaaaatttaataCAATATTTCAGAAGATATTATAAAAAACTTC
TGTATTCATAGCCAATGGACTGTGTTAAAACTAGGTGATGTGAATGTGAC
GGACTAGTATGTCCGTTTTTCCTACAAAATTAAAAGTAGTTTTGGACAAA
TTTGCATAGATGAGTCATTTGACCAAAACTacttttttaggaaaaactga
aattgtgtacagttgacg
Run BLAST on NCBI

transcript from alignment at sc0000355:256799..257066

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020400 ID=TCONS_00020400|Name=TCONS_00020400|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0000355:256799..257066 (Clytia hemisphaerica)
cgtcaactgtacacaatttcagtttttcctaaaaaagtAGTTTTGGTCAA
ATGACTCATCTATGCAAATTTGTCCAAAACTACTTTTAATTTTGTAGGAA
AAACGGACATACTAGTCCGTCACATTCACATCACCTAGTTTTAACACAGT
CCATTGGCTATGAATACAGAAGTTTTTTATAATATCTTCTGAAATATTGt
attaaattttgaatatttgtcTTTTGGCAGTATCTTAAATTGAAAAAGAT
AATGACTTTCTATCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011461XLOC_011461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020400-exon-sc0000355-1491911889:256799..257066TCONS_00020400-exon-sc0000355-1491911889:256799..257066Clytia hemisphaericaexon
TCONS_00020400-exon-sc0000355-1510915933:256799..257066TCONS_00020400-exon-sc0000355-1510915933:256799..257066Clytia hemisphaericaexon
TCONS_00020400-exon-sc0000355-1575043694:256799..257066TCONS_00020400-exon-sc0000355-1575043694:256799..257066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:256799..257066 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2469	10.8052	5.28249	1.93803	3.93228	1.86441	1.49955	4.21158	3.9315	5.47853	2.36337	0.388397	0.387857	0	4.30497	1.4215	0.875588	5.83342	0	0	3.38313	6.6007	14.7107	11.5504	0	1.67644	1.59932	1.70684	3.88373	5.27588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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