TCONS_00020367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020367
Unique NameTCONS_00020367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020367 ID=TCONS_00020367|Name=TCONS_00020367|organism=Clytia hemisphaerica|type=transcript|length=895bp
TATAGGAAGATTATCAAGATTGAAACTTTATAAATTCAAATTATACAAAG
ATAAACAGAAAAACTATGGATTATCCTGATCCTGAAGATTTTTTAGACCA
GGATGATTACGATTTGTATGAGAATCGTTTTCAAGATGAATTTGAAATGA
TGGaggaatttgaaaatgaaaatacaacaaagaaaaagaatgATAAGGTT
GATTTCACTGTTGAAAACAAGACAACCAAAACTGCAAATGAACTTGACCG
ATCACTTTTGAAAGGCAGTTTGAAGAGAACTTCCACCTTCTTGGAATCAG
ATGATGATGAATTAATGTACAGTGATGAAgaagataagaaaaaagaatCA
TCAAACGGGGCCAGCatcaaagaaaataattcaCCAATGAAAGaaaaatg
tacaaaaaagttgaaatttgatGAACCATCACCACCATCAGAAACAATAA
CACCTCAAAGTCAAGCTTCAAAAGAATTATCAGAATTGAGACAAAGATTA
CAAGGCAATATAGAGGATGATGCAGATGATTTTGATGAACAGCAATACAA
TAATACAAGACAACGTGTTTTTCGTAGACCTTTACTTGGGTATGACATGG
TGAATGTAACAAATACAGAAGGTGATCGGGTTTTCTTGAAATTGTCACCT
GATACTGAACACGAAAAGTCAAAGgtCACATTTCGTGATACAGATGGTCG
GTTGAATTTGCTCTCCGTTCCATTTGAAGATCTGCTCTCAGAAGTCAATG
AAAAGagaCATCAGAATTTAATCCAGCGCCGTGCCATTAACAGttCTGAT
CGTCGTGTTCCTGACATAAGAGGCACAAAAGACCTGGCTTTATGGGTGGA
TAAATATTCGCCTCATAAATACACTGAACTTCTAAGTGATGATGT
Run BLAST on NCBI

transcript from alignment at sc0000355:229717..236105+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020367 ID=TCONS_00020367|Name=TCONS_00020367|organism=Clytia hemisphaerica|type=transcript|length=6389bp|location=Sequence derived from alignment at sc0000355:229717..236105+ (Clytia hemisphaerica)
TATAGGAAGATTATCAAGATTGAAACTTTATAAATTCAAATTATACAAAG
ATAAACAGAAAAACTATGGATTATCCTGATCCTGAAGATTTTTTAGACCA
GGATGATTACGATTTGTATGAGAATCGTTTTCAAGATGAATTTGAAATGA
TGGaggaatttgaaaatgaaaatacaacaaagaaaaagaatggTAAGTCA
AATATACACCCTTTTTACGGTAGACGTGCTTACCATTTGATTacttaatt
atccccctaaaacAAGATTCAATCTTTTTGACACTTAGTTTGGGGTTTAG
GGTCGTGATAAACAGACAAAAATTGCCTGTGTGGCAATTGGTagctacag
tcgaaaaggttATTATGGCCGACCAACCTTCATTGAAACTGGCTGATGTA
AGAATTTATTCTTATAACTAACAGAGTGTGTGTCTTACAAACCGTACTGA
GTATGACCTTCAAACTCACTTTTTGAGAAACAACCATTTTAAGAGGCCCC
CAAGCGGTTATCATAAGGGCTGTTTGGGACTTTTtctagcgtgattacgt
gatttggaaattattttttcgtgaTTGCGAGATCAGAAGGCAAATCGTGA
TTgtcatttgaaagattttttagccGTGATGcatgatttggactttttca
aaaggATGTGTGATTatccatttttttttgctgatttttgcgaTCGTGAg
atttaaaaagacaaaaaattgcattATACAGTGACCAGActtaccgctgg
ggggcctcttttAGAAAGctcttggaaattttttctacATTCAATGTcat
gaaaaaaaacatcaaaaaaagaataagtaactcgatttttttaatgtttc
ttcAAACAGATAAGGTTGATTTCACTGTTGAAAACAAGACAACCAAAACT
GCAAATGAACTTGACCGATCACTTTTGAAAGGCAGTTTGAAGAGAACTTC
CACCTTCTTGGAATCAGATGATGATGAATTAATGTACAGTGATGAAgaag
ataagaaaaaagaatCATCAAACGGGGCCAGCatcaaagaaaataattca
CCAATGAAAGGTatttattaaattaaaaatcctatttctttcaaaaataa
gtACCATTTGAATTTTGCCTAACAGATGAtcatttaatattttcaaattg
ataTATGCCTCTTTGTTAATGGAAAAAGGTCTCTGTTACCACAATTTACA
GGGTATTGTTGAAAGCTACTAATTATGATTTTGGTATATATTTTTATCAA
GAACCATTTAAAAATATTCTATTTTAATAATTGGAGAGGTAGAAATTTTA
ACAGAAAAGAGAATGGCGGAAGCACGTAAACATGATGGAAAGCTCTCTTT
TATAACACAACCAAATGTTTGATATTAAGATTTAAGATACTGCTGTCAAT
CAGGGTTAACTTTCATAGCAACCAGATTgcacatttttggacctaccccg
gtggggtggaggtcctataagttaacctgtgtttgttcgtccgtccgtcc
gttcgttcgttcgtttgtttgtctgttaccaacttttctcaggattgaat
cataggaatcttttgatttttggtataaaggtgcaaaatgatggtggcca
aaatgtgacggagctcgattttcaaaaaaacaaattttgggcaaatttgg
gccaaaaaacggctaaaatacGGGTTTTtcagactttgtgaaaaattgga
tcattaattttttctgattttttgcatgaaagtaggtctagatatgaaat
tttggttgcttggcaatgttcttagtcaaattactcaatttttttatgag
atatatgtttttttttgctcatgagggcttacttttgaagaatatctGTG
TTAGCCATGCAATTTTGGTTGCtttgcgtgtttttatagaaaaactggcc
gaattcgatatttttttataagcacattataaATTACTTAGGTAtaagct
tttctcgagattggctctttcattctttatgattttttgcacaaagatgc
ataactataaaccctcgaatgtgatggagcttgatttttcgaaaaaagat
ttttgggtaaatttcagctaaaaaacggctaaaaaaagggttttttgcat
gaaattaggtaaaagatggctcaagcagatttttgtaaaaaaatattttt
tcagctcaaaaaacgcatttttatctataagaatcactattaataagcat
acatcaatgttcttagccaaattactcaatttttttatgagatatatgtt
ttttttgctcacgaagtcttgaatatgaaagaatatttcaagagcatgaa
attttggtttccaagcgttttttttataagaaacaaacgactaattttaa
tagatcgtcactatttgtgttctgaatgattgtttaatggtcaagctcac
gtagatatcaattatatatgtgttaaatgcataaccaggtaggtccataa
aagtatcacttgttcatcCTAGAATTATaatttatatttgtaagtcagaA
TACTGCAACGTGACATTTTTACATTACATTTTAAGCCAGCTAGCATGATT
TAAACTAAAGCTTGCAGATCAGAAGAGTTCCCTGGTAGGAGGCTATGAAA
GTTACTCCTCCCTGACGAAAGCAACTCTAAATGGATGGTGCCACTTTTAA
GCACTTGGTTATACATTTCTTCTCCTTACCTTTTGATTATtagaaaaatg
tacaaaaaagttgaaatttgatGAACCATCACCACCATCAGAAACAATAA
CACCTCAAAGTCAAGCTTCAAAAGAATTATCAGAATTGAGACAAAGATTA
CAAGGCAATATAGAGGATGATGCAGATGATTTTGATGAACAGCAATACAA
TAATACAAGACAACGTGTTTTTCGTAGACCTTTACTTGGGTATGACATGG
TGAATGTAACAAATACAGAAGGTGATCGGGTTTTCTTGAAATTGTCACCT
GATACTGAACACGAAAAGTCAAAGGTATgccttatttttattttttcagt
ttgCAACAGCGTTCAGTGTTTTGCCATTCCAGACAGTTTTCCCTCATTAC
AAAGTACAAAATGAGGCTCTGTTTAAAAATGctgcaaaattttaaagaat
ctTGGCTAATTTCTAGTGTAAATTTGTGTACAGCTCTTTGCTTTTAGCAC
TGTAGTTGCTAAATTTAAAATAACAACATTCTCATTTCAATGCCTTTGCG
TTTACAGCCTTTTGGGTTTGTTGATGATTAGGATTGCTAAGCGGTAAGAC
TGTATAGTTTGTGTAATTTTAGTTAAAATGTTggtaaaattttaagaata
aatgttcatttttatttcaggtCACATTTCGTGATACAGATGGTCGGTTG
AATTTGCTCTCCGTTCCATTTGAAGATCTGCTCTCAGAAGTCAATGAAAA
GGTTGACATTTTACCTTTATAGCATCTGAGAAAGCCTTCAAAATCCtgaa
ttttaacattttgatttgatgatttcactgaagattggtgCCAGAGCACC
AATGAAACTCTTGAGTTTGATGGATATTgagtcaactctttattatagaT
CAGTTCATgatttgattaatttttaatATAGATTTTTCCTGCAAAGTTTA
ACTTTCTgttgtatttttaaattttagagaCATCAGAATTTAATCCAGCG
CCGTGCCATTAACAGGTAACATTGATTTTCATATGTTGACAAATAATTAT
ACAATTATGATTATCTGTCGAGGATTAAAGAGTATTTTTGGGAAAAGTTT
TTGTGTGCATTTTTGGGCCCTGACAACAACGAGCAATCAAATTCACCAAG
TTCACCATATATTGCGAGGTTCACTTCGTTCAATGTTATGAAattcattt
tactttttagttCTGATCGTCGTGTTCCTGACATAAGAGGGACAAAAGAC
CTGGCTTTATGGGTGGATAAATATTCCCCTCATAAATACACTGAACTTCT
AAGTGATGATGTAAGTATCGTtctgattttttaaataattatacTTAATT
AAGAAACACCATTTAACGAATCTACTACCATTTGCTTACCCAAGAAAATT
AACACTTTATCCCCTTTCCGTGCAGCACAAGCACAGATTTTTAGAAATTC
CATTgtttattctgctttgtcagcatagaggcATGCCTCCTTTCTTAGAC
AATTGACCTGTATAAGACTATATCGAAAATAGAATAACAATGGaaataaa
tctttaaaaaatgatgGACTTCATTCAGACTTAAGTGTGCCTTGTCGACT
TGTTATAGCTAATGATTTGTTTTTACTCAAATCTTTTAGTTAGTAAACTA
AACATGTCAAAGaggaattttgattttaaccatTCACAAAGAAATTCACA
AGCTAAGATTTTCACCTCCGGCCTATTGCTTGTTTTGGAAACTTGACTGG
AAATGTTTGGtttcaaaattattaaaaattggTCTTTACACAATCGAAAC
CTACAATATCacttttgaatattgaattttcaaaattaatccCTCAATAA
AACATTTTAGAGGCGGAAAATATGAGGTGGTTCGGTGAACACAAGATATC
TTTTAGCCAAATATTTTAAAGGATCTGATTATCTCACAAAAGCACTTCTC
AGTCTGCTCCTGTAAAGAATCCTTCATTATAACACCCATGCGCAATTTGT
CGTTCTCTAAACCATGTGTAGTTAATCTTTGTAATGAACAAAGAGGATCA
AAACATGGGGTGGACAAACTATCCGGTTTGGGGCTGTGGATTGCGTAAcc
tgtcgttctttttgtctattttttgcaaatgtaggattctttagaCTAAA
CTCCCTCTCTATTGTTTAGGGAACAAACCGACTTTTATTGAAATGGTTGA
AGCTCTGGGATAACGTTGTTTTTCACGAAGGGAAAGCAATCAATACAAAA
CGTTTCACcaataacaacaacaataacaaatttcaaaataaagatggTGG
ATTCAagaaacaagatggcggcaagTTTAAACGGAGAGATTTCACTAAAT
CAACGTTTGCAAGTAGACAAGCTATTTTGGAAGAGGAGCTGGTATTAATT
TTATTCCTTGCCTtccttttacacgttttttttagaaCAAACTAATAAAC
cagaatattaagaacaagttaaggttttgtttcataggaaaatggacaaa
aatactcttaaaatggtggaaataaTTACATGTtagaacattttgaaaac
tcaaaacatccaaaggcttcaaagattttggatcttataaaaaaacgtgt
ttcacCATCTAGAGCCTTATTTAGAGTCTGGCATTCTTTGCATCATCCTT
CAAATATTTGCCAGTTCTTGTGAATCAATTAAATGGCTTTCCTCGAAAAT
TTTATAACATCACTTAAAATAGAATGAGACTTTTTAATTGTGACCCATGC
AAATGATTTTTATCTTAATGCCAACTGCCGAATTTTCTTCATTAACTGCT
CTTTTCCTTACTACCTCGTATAAAGCCTTTGTCTCTTCTTAACCTAAGTG
TTTCTATTATAACCAGTAGAAAACCAAAatgattttcctatttttctttt
ccattttaggTTCATGATAAAAAGGGAAGACCGAAAATGAAGGTACATTC
CATTTTTCGGGTCAGGGTTgtttagcattctagctcattttctgaaaaat
ttgctttgaccacccctgatataATACCATATTTATACATATATAGGTGT
ATCTTTTATAGAACTAAAgttattttttcggaaaatttttctaaaagctt
atttgcttcaaaaacttgaaaatagtgctttttgaccaattttccatccc
aatttttcatagaaaacagccataacttttgatgcattaatttagaaaaa
ttttccgaaaaatttaaaacagttcaattctttgcggacagtttgaaaaa
acttcgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTCGAGG
ATTAAAGAGTATTTTTGGGAAAAGTTTTTGTGTGCATTTTTGGGCCCTGA
CAACAACGAGCAATCGAATTCACCAAGTTCACCATATATTGCGAAGTTCA
CTTCGTTCAATGTTATGAAattcattttactttttagttCTGATCGTCGT
GTTCCTGACATAAGAGGCACAAAAGACCTGGCTTTATGGGTGGATAAATA
TTCGCCTCATAAATACACTGAACTTCTAAGTGATGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011442XLOC_011442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020367-exon-sc0000355-1491911889:229717..229908TCONS_00020367-exon-sc0000355-1491911889:229717..229908Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1510915933:229717..229908TCONS_00020367-exon-sc0000355-1510915933:229717..229908Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1575043694:229717..229908TCONS_00020367-exon-sc0000355-1575043694:229717..229908Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1491911889:230576..230776TCONS_00020367-exon-sc0000355-1491911889:230576..230776Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1510915933:230576..230776TCONS_00020367-exon-sc0000355-1510915933:230576..230776Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1575043694:230576..230776TCONS_00020367-exon-sc0000355-1575043694:230576..230776Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1491911889:232410..232690TCONS_00020367-exon-sc0000355-1491911889:232410..232690Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1510915933:232410..232690TCONS_00020367-exon-sc0000355-1510915933:232410..232690Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1575043694:232410..232690TCONS_00020367-exon-sc0000355-1575043694:232410..232690Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1491911889:233037..233117TCONS_00020367-exon-sc0000355-1491911889:233037..233117Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1510915933:233037..233117TCONS_00020367-exon-sc0000355-1510915933:233037..233117Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1575043694:233037..233117TCONS_00020367-exon-sc0000355-1575043694:233037..233117Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1491911889:233344..233381TCONS_00020367-exon-sc0000355-1491911889:233344..233381Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1510915933:233344..233381TCONS_00020367-exon-sc0000355-1510915933:233344..233381Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1575043694:233344..233381TCONS_00020367-exon-sc0000355-1575043694:233344..233381Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1491911889:236004..236105TCONS_00020367-exon-sc0000355-1491911889:236004..236105Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1510915933:236004..236105TCONS_00020367-exon-sc0000355-1510915933:236004..236105Clytia hemisphaericaexon
TCONS_00020367-exon-sc0000355-1575043694:236004..236105TCONS_00020367-exon-sc0000355-1575043694:236004..236105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:229717..236105 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.92538	1.37129	1.03849	4.40597	1.32001	0	2.66709	1.12807	0.947113	0.421869	0.391759	0.659404	0.997664	0.26083	0.725941	0.304857	0	0.670688	0	1.6172	0	2.66697	2.00429	4.98505	2.69748	0	0	2.06507	1.94942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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