TCONS_00020348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020348
Unique NameTCONS_00020348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020348 ID=TCONS_00020348|Name=TCONS_00020348|organism=Clytia hemisphaerica|type=transcript|length=716bp
aaagaacgcgtcatttttattactggAAATGACCAATTATAAAAGTatct
tatgaaaaattcacgTATTTAAACACAATATTGCAgattcatgcattcac
gcaatcaaaaagtggattttcacgttctcctaagtttttttcaattcaca
cattctttatcaattttcatGCATTCACACAACCGGAAAAGCCTATTCAA
GGATTAATGCAAACTGCTGGCCTGGGAGGGCCCCATAATAAATCGAACAG
TGATAACAGAATATCTCTTATTGTTCATTTTTAGCTGTCAAATAATAAGA
AACAATAATCAAAATGACTGCACCACCACTTTTCCCACAAATTGTTGCCA
CTATTCGCATGAATAGAAAAGCATTatgggaaaaattattttttgttcat
gTTGCTTTCGGTTTGACCGCTTATACCGTCTACAAGATCCCAGTCACTGa
TAAAGATAGACAAGCATCGAaaacattGAACCCATGGAACCAACCTTCAG
ACCATTAAATTGATATCAGATCGTGACATCAGCTGTATTAGTTTGTAATT
TCAAGTGTATATATTACACATTTTTATTCAGGAATAGAATAatatgaaaa
attacaaaatgtctTTTCCAGTTTTTGGATCTccgacctacctggaggtc
ctataaattaacctgtgttcgttcgtccgtccgttcgtctgttaccaact
tttctcgggattgaat
Run BLAST on NCBI

transcript from alignment at sc0000354:253957..255519+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020348 ID=TCONS_00020348|Name=TCONS_00020348|organism=Clytia hemisphaerica|type=transcript|length=1563bp|location=Sequence derived from alignment at sc0000354:253957..255519+ (Clytia hemisphaerica)
aaagaacgcgtcatttttattactggAAATGACCAATTATAAAAGTatct
tatgaaaaattcacgTATTTAAACACAATATTGCAgattcatgcattcac
gcaatcaaaaagtggattttcacgttctcctaagtttttttcaattcaca
cattctttatcaattttcatGCATTCACACAACCGGAAAAGCCTATTCAA
GGATTAATGCAAACTGCTGGCCTGGGAGGGCCCCATAATAAATCGAACAG
TGATAACAGAATATCTCTTATTGTTCATTTTTAGCTGTCAAATAATAAGA
AACAATAATCAAAATGACTGCACCACCACTTTTCCCACAAATTGTTGCCA
CTATTCGCATGAATAGAAAAGCATTatgggaaaaattattttttgttcat
gTTGCTTTCGGTTTGACCGCTTATACCGTCTACAAGATCCCAGTCACTGG
TAAGGaatattctttttttctaacCTTTGCTCCAATTACTCTCCTATATG
CTATCTTAGTAACTGACATTAGATCACTAGGTCTATTTTTTGTTACAAAG
GCTTCTTATTTTTCTAGACATTTTAAATCTTAGCCAAAATTTTTGACTGT
CGATTTTTCATTGCCTAAGTAAGACCCCTGATCATTTTTATCTATTTCTG
AGTAAACCATCGGTGATGGCCAAAAAGGTCACTATCCATAAGGCTATTCT
AACAACAATCTTTTTAACTGAAAATGGGCACCTTCCCATAACCGGGAagc
atgaaaaatgaaaaaaatttggtatttgatattttctttttctgtttctt
tttcttcagaTAAAGATAGACAAGCATCGAGTaagactttcattttaaat
tgaCTTTATTTTGAACATTATTATTGCCTGTTTGAAACTTATGTACATGA
AGGAACTTTAATTTAAGTTTCTTGCGTACGtaaagggaacttattttgat
cAGAACTAAGAGCAGCAAAAATCGTGAACATTTTTAATATTGGCGAAAAC
TTCTTTCGGCGAATTTggttaaactttttaaattttggtgagagctaata
gacgatatcggccttccgaattctccccgaatgattacccatgatgcatt
gcgcaaaaaaattcacgtaAATTCAATATTGTACGTGAATtattttgcgc
aatgcatcatgggtaatcattcggggagaattcggaaagccgatatcgtc
tatttgtcgttctttttgaaatttgtcattcttttttacTGTTGCGAAGC
AGGCACATTCTCCCCCTTTTTATATTCGTCTTCTTGATATCTTATTATAC
AGTactctatttttcagaaacattGAACCCATGGAACCAACCTTCAGACC
ATTAAATTGATATCAGATCGTGACATCAGCTGTATTAGTTTGTAATTTCA
AGTGTATATATTACACATTTTTATTCAGGAATAGAATAatatgaaaaatt
acaaaatgtctTTTCCAGTTTTTGGATCTccgacctacctggaggtccta
taaattaacctgtgttcgttcgtccgtccgttcgtctgttaccaactttt
ctcgggattgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011424XLOC_011424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020348-exon-sc0000354-1491911889:253957..254405TCONS_00020348-exon-sc0000354-1491911889:253957..254405Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1510915933:253957..254405TCONS_00020348-exon-sc0000354-1510915933:253957..254405Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1575043694:253957..254405TCONS_00020348-exon-sc0000354-1575043694:253957..254405Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1491911889:254766..254786TCONS_00020348-exon-sc0000354-1491911889:254766..254786Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1510915933:254766..254786TCONS_00020348-exon-sc0000354-1510915933:254766..254786Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1575043694:254766..254786TCONS_00020348-exon-sc0000354-1575043694:254766..254786Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1491911889:255274..255519TCONS_00020348-exon-sc0000354-1491911889:255274..255519Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1510915933:255274..255519TCONS_00020348-exon-sc0000354-1510915933:255274..255519Clytia hemisphaericaexon
TCONS_00020348-exon-sc0000354-1575043694:255274..255519TCONS_00020348-exon-sc0000354-1575043694:255274..255519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000354supercontigsc0000354:253957..255519 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
144.893	148.335	185.938	228.102	147.34	119.816	172.737	221.097	295.304	203.582	281.994	317.456	206.347	230.295	130.506	126.999	198.575	207.18	86.2703	75.5828	280.686	264.135	168.245	169.592	210.933	312.996	211.268	185.622	142.22	124.519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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