TCONS_00020320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020320
Unique NameTCONS_00020320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020320 ID=TCONS_00020320|Name=TCONS_00020320|organism=Clytia hemisphaerica|type=transcript|length=394bp
NATCACCGTAGTCAAGATGAGGTCTAATGTAAGATTTATAGATGGTAAGA
AGAGATCTTCTAGGCACATGTTTGCGAAGTCTGTTAATAAGGCCAATACC
TTTACTGGCCTTTTTTATCTTCTCCTCAAGATGgtaatcaaaagaaagtt
ttgaatctaagataAGACCTAGATGTTTTTGGTGCTCACTGACAGCGATG
TTAGTGTTATTGAAGGAGATTACTGGAACATTAGCAGGAGTGATTCTGCA
GGTAAAATAGACTTCCACAGCTTGTTTAGAAGGGTCTAGGTTggacatct
tccattgacgaGCCCACTCACTTATCCTGGCAAGATCTCTGTTTAGTACC
CCAAGGCTCAAGAGCTGGTCCATCACAAGGGAGAATAAGGAGGT
Run BLAST on NCBI

protein sequence of TCONS_00020320-protein

>TCONS_00020320-protein ID=TCONS_00020320-protein|Name=TCONS_00020320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
TSLFSLVMDQLLSLGVLNRDLARISEWARQWKMSNLDPSKQAVEVYFTCR
ITPANVPVISFNNTNIAVSEHQKHLGLILDSKLSFDYHLEEKIKKASKGI
GLINRLRKHVPRRSLLTIYKSYIRPHLDYGD
Run BLAST on NCBI

transcript from alignment at sc0000351:197445..197838

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020320 ID=TCONS_00020320|Name=TCONS_00020320|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0000351:197445..197838 (Clytia hemisphaerica)
ACCTCCTTATTCTCCCTTGTGATGGACCAGCTCTTGAGCCTTGGGGTACT
AAACAGAGATCTTGCCAGGATAAGTGAGTGGGCtcgtcaatggaagatgt
ccAACCTAGACCCTTCTAAACAAGCTGTGGAAGTCTATTTTACCTGCAGA
ATCACTCCTGCTAATGTTCCAGTAATCTCCTTCAATAACACTAACATCGC
TGTCAGTGAGCACCAAAAACATCTAGGTCTtatcttagattcaaaacttt
cttttgattacCATCTTGAGGAGAAGATAAAAAAGGCCAGTAAAGGTATT
GGCCTTATTAACAGACTTCGCAAACATGTGCCTAGAAGATCTCTTCTTAC
CATCTATAAATCTTACATTAGACCTCATCTTGACTACGGTGATN

Coding sequence (CDS) from alignment at sc0000351:197445..197838

>TCONS_00020320 ID=TCONS_00020320|Name=TCONS_00020320|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000351:197445..197838 (Clytia hemisphaerica)
ACCTCCTTATTCTCCCTTGTGATGGACCAGCTCTTGAGCCTTGGGGTACT
AAACAGAGATCTTGCCAGGATAAGTGAGTGGGCtcgtcaatggaagatgt
ccAACCTAGACCCTTCTAAACAAGCTGTGGAAGTCTATTTTACCTGCAGA
ATCACTCCTGCTAATGTTCCAGTAATCTCCTTCAATAACACTAACATCGC
TGTCAGTGAGCACCAAAAACATCTAGGTCTtatcttagattcaaaacttt
cttttgattacCATCTTGAGGAGAAGATAAAAAAGGCCAGTAAAGGTATT
GGCCTTATTAACAGACTTCGCAAACATGTGCCTAGAAGATCTCTTCTTAC
CATCTATAAATCTTACATTAGACCTCATCTTGACTACGGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011407XLOC_011407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020320-exon-sc0000351-1491911889:197445..197838TCONS_00020320-exon-sc0000351-1491911889:197445..197838Clytia hemisphaericaexon
TCONS_00020320-exon-sc0000351-1510915933:197445..197838TCONS_00020320-exon-sc0000351-1510915933:197445..197838Clytia hemisphaericaexon
TCONS_00020320-exon-sc0000351-1575043694:197445..197838TCONS_00020320-exon-sc0000351-1575043694:197445..197838Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020320-proteinTCONS_00020320-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:197445..197838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00518	1.05989	2.87932	2.80487	0.943997	0.480276	1.97242	0.865927	0.410331	0	0.971997	0.766313	0.821179	1.86748	0.217788	0.260749	0.533739	0.235075	3.45348	3.00778	0.856589	0.406214	0.659645	0.399808	0.461718	1.2863	0.563007	1.40317	0.248302	1.56904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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