TCONS_00020318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020318
Unique NameTCONS_00020318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020318 ID=TCONS_00020318|Name=TCONS_00020318|organism=Clytia hemisphaerica|type=transcript|length=124bp
ggagtctccatgaTAGTCAGGCTATAACTTTGGATAAAGGTAGAATTAGA
ACGTCCAGTAAAGGGAAATGATTTGAGTAAAGTATTAGGAATAAAATGTG
CATTAAATTAGATTCTTCGCAGTG
Run BLAST on NCBI

transcript from alignment at sc0000351:189888..190011

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020318 ID=TCONS_00020318|Name=TCONS_00020318|organism=Clytia hemisphaerica|type=transcript|length=124bp|location=Sequence derived from alignment at sc0000351:189888..190011 (Clytia hemisphaerica)
CACTGCGAAGAATCTAATTTAATGCACATTTTATTCCTAATACTTTACTC
AAATCATTTCCCTTTACTGGACGTTCTAATTCTACCTTTATCCAAAGTTA
TAGCCTGACTAtcatggagactcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011405XLOC_011405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020318-exon-sc0000351-1491911889:189888..190011TCONS_00020318-exon-sc0000351-1491911889:189888..190011Clytia hemisphaericaexon
TCONS_00020318-exon-sc0000351-1510915933:189888..190011TCONS_00020318-exon-sc0000351-1510915933:189888..190011Clytia hemisphaericaexon
TCONS_00020318-exon-sc0000351-1575043694:189888..190011TCONS_00020318-exon-sc0000351-1575043694:189888..190011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:189888..190011 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top