TCONS_00020313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020313
Unique NameTCONS_00020313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020313 ID=TCONS_00020313|Name=TCONS_00020313|organism=Clytia hemisphaerica|type=transcript|length=2898bp
aaaaagaaaaaacctCATATTATTCATGCAATGATTAAGGATTTTCGTGT
TAGTCTGCTCTGCTTTCGAGTTTTGTTACCTCCATGAGTCTATAGTtatt
taaaaaaaagctaaaacGAAAGATGGACATGTATAAAGGTTTAAACCAAG
CTGTTCTTGACAAGTATATGGAGTTGGATACAAGAGGGTTGATCCAGTTG
AATTATATTTGGATTGACGGGACCGGTGAAACAATGCGCTCCAAAACGAG
AACAGTAGATTGGGACCCTGTGAATGTTGATCAATTGCCTATTTGGAATT
TTGATGGATCCTCAACTGGCCAAGCTCAAGGGAGCAACAGTGATACTTAT
TTGCATCCTGTAGCCATTTTTGCTGATCCTTTCAGAAGAGGAAAACATAA
GCTCATCTTGTGTGAGACGTACACTTATGATCATAAACCAACCAAAACTA
ACAAACGAAAAATATGTCAGTATGTTATGGAACAAGCTAAGGATGAGAAA
CCTTGGTTTGGTATGGAACAAGAATACACGTTACTGGATCGTGATGGCCA
CCCCTTAGGTTGGCCAAAACATGGCTACCCTGGTCCCCAAGGACCATACT
ACTGTTCCGTTGGTACAGGACGTGTTTTTGGTAGAGAAGTAATGGAAGCT
CATTACAGAGCTTGTATGTATGCTGGTGTCAAGATATCGGGAGAAAATGC
TGAAGTAATGCCAGCCCAGTGGGAGTTTCAAGTTGGACCATGTGAAGGGA
TTGAGATGGGTGATCATTTATGGATGGCCCGATATCTCTTGGAACGTGTG
TCAGAAGATTTTGGTATCAGAGTTTCATTGGATCCTAAACCAATGCCAGG
TGATTGGAATGGTGCCGGATGCCATTGTAATTACAGCACCGAAGAAATGA
GGAAAGAAGGTGGCATTACTCATATTTACACTGCAATTGAAAAGTTGGGG
AAAAGACATGATTACCATATCGAAATGTACGATCCTCGCGGTGGACTTGA
TAATCGAAGACGTCTAACAGGACGTCATGAGACTTCATCTATCCATGATT
TTTCACATGGTGTGGCTCACAGAGGGAGCAGTATTCGCGTGCCTCGCCAG
TGTGCTGAAGATGGATATGGGTACTTTGAAGATCGAAGACCATCCTCTAA
TTGTGACCCATATTCAGTCACTGAGGCGCTAGTACGTACTACAATCTTAA
ATGAGGCCGATACTTCGTCCGAAGGGAAAGCAGCTACTGTAACGAAATGA
GTCAAGGTTTGATATAATTATGAATTTAGGTAAGTAGATGTCTTTACAAT
TTGTAGTGTGTACATTTTTAgttattatttatattttggCATGTATTTAA
AGGTATTGTCTaaacgtttttgttttttatttatttgcaTTTAATTTATT
GGAACTAAATatttgtacatttttatttcatttccaaagtttcttttttt
ttattatatagttagtgcagaaaaatattattgaaagaATTAACTATAGA
GACAAAGTGGTATGTTTCTGATATTACATTTGCGGGTTTGCAACAACCCA
CGCTCGAAAGAAGTGGGTTTTCTTGCATTATTGTGAATTTTGTTATACCG
ATTAGTCTATAGCTAAGCTGTTTTTCTTCGGAGGAAGAGATTTTGATGAG
GATTAAATATGAAGGATGGTTTAAAGGAATTAATTTGCTaagtatttaat
ttggcggtcgcagaattatttttggccaaaaatcgTTGTTAGATAGGCAA
AcactttttgccaaatttgcTAAAGCCGCTAAATTTACTTCTCAAATTGC
CTTCCTTTCAAAACCTTTAATACGCTTGAATTTACTTTCGAAATTATCTA
TCATATGATTTCGTATGAAAGAAATTTGGCAATAACTGACATCTCTATGC
AATTGACAAATCGAGGCTAATAACATTTCCAAGGTAGCCATATAATAAAC
ATGAACAAATTCCCTAGGTTTTGGAAATATACCGGGAAAATACGAAAAAC
TTTTGGCGCCCTTCACCCAAAAACTCCGACGTTTTATTCGACTCTCTATA
ATAATTTCGAGCTCTGATAGAGCGGTTTAGTTTCAGCTATCTTCTTTTTT
GTGTGATTTCCTAGAAAGTTTATCACTTCGGgtataaattaaaaatattc
agtAAAGTTTCAAACAGCGTTTTCCTACTTTGAACATGTATaattatata
aatatttttcacggGAAGATTCATTCTTTTTTGTCCATCCTTTCTTAATC
CACTCCGTCactttgtttattatttttcttgaatAATGTTTACGTTTTTC
GTTAAATTCCCAATTCATTCTATTCGATTTGTTTAGTGTTGTTCTTCTAT
ATTTAGTATAGCTTTTTATTATTAATGATTAAAACTATCCAATTTTCGGC
ACTTTTCcggaaaaatagttttaaaagtttatGGTTTTGCAAGCTATCgt
atgtttttttctaaaaaaaatttgctaTGTTAACCAATATGTGATGCTGG
ATGATTAACATGGCTCCACTACCAAATAGTAGGTTTATTGCAGGCCcagc
ggaacaaccgtaaaagtggggaggctgaaggctcaaaatgagataaaatt
cgctagaaattcgagaaaaaaatctcaattgCTCAAAAGTGGGTTGGCGT
AAGTCTTCCCAGTCTCCCCGTTTTCGCCGGGCCTGTATTACAATAAAATT
acatttcaaataaatttttcggTACAACCTATCAAATTTCGTGATAATGA
GGGTTAAGGGAGATTCGATACGACTTAACCCCTTTTTTTATCTCAAGAAC
CTTCCCAATCATCTTcggaattgaatatctattgattaaGCAGAGAATTg
taatcttatttcaattattctaagCCAACTTAAGAACGAGTTTTGAGG
Run BLAST on NCBI

protein sequence of TCONS_00020313-protein

>TCONS_00020313-protein ID=TCONS_00020313-protein|Name=TCONS_00020313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MDMYKGLNQAVLDKYMELDTRGLIQLNYIWIDGTGETMRSKTRTVDWDPV
NVDQLPIWNFDGSSTGQAQGSNSDTYLHPVAIFADPFRRGKHKLILCETY
TYDHKPTKTNKRKICQYVMEQAKDEKPWFGMEQEYTLLDRDGHPLGWPKH
GYPGPQGPYYCSVGTGRVFGREVMEAHYRACMYAGVKISGENAEVMPAQW
EFQVGPCEGIEMGDHLWMARYLLERVSEDFGIRVSLDPKPMPGDWNGAGC
HCNYSTEEMRKEGGITHIYTAIEKLGKRHDYHIEMYDPRGGLDNRRRLTG
RHETSSIHDFSHGVAHRGSSIRVPRQCAEDGYGYFEDRRPSSNCDPYSVT
EALVRTTILNEADTSSEGKAATVTK
Run BLAST on NCBI

transcript from alignment at sc0000351:288325..295304-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020313 ID=TCONS_00020313|Name=TCONS_00020313|organism=Clytia hemisphaerica|type=transcript|length=6980bp|location=Sequence derived from alignment at sc0000351:288325..295304- (Clytia hemisphaerica)
AAAAAGAAAAAACCTCATATTATTCATGCAATGATTAAGGATTTTCGTGT
TAGTCTGCTCTGCTTTCGAGTTTTGTTACCTCCATGAGTCTATAGTGTAA
GTAAAATTTAATACGTCTTTATTTTTTTTACAATAATCATTGTTTGATCG
ACATGTCTAGAAATTCTGCTGTGACTGTGTGATTACCCTCTATATATATA
GTTACTTTTGGTGATTTAGCTAAGGTTCTAAGCTAATAGTATTTAAAGAT
GTATATTATAAGCTTAGTTGCAAACAAACTCCGTCCTCACCTTTTTGCCA
AACACTTTTTTCGTATTATCCCAAACACTGCCACTACTTTTTTTTTTTTA
AGAAACACACTTTTAAGAAACATGAGGCTTAGAATGCCTAAAAACTAAGA
AACATCTAAGAAACATGCAATTCGTTTTTTTAAAAGAACCTTAACATAAC
AGTTAGAAGCACTTGAGAAAGTCAGAAAATCAATATAGAAGATAGGAAAG
TACTGTAGATTAGTCTCATCGACATGCGTCCTTTAAGCTTGACAAAGTTT
AGAAACATGTAAGAAACATTTAAGGCTCAAAAGGTTGATTTCTTAAGAAA
CATTACCAGACGGTGTCAATCGAACGAATTGAACTCCGAATCAATTGAAC
GCAATCGAATAATTGCAATTCGATTGTCGAACGCAATCGAATCGCAATCG
AATCGCAATCGAATATTACCTAGGATTTGCTGTTCGATTGCTTCGATTAC
GTTGGATTGTATTTGATTACGTTCGATTGATTCAATTATATTCGATTTTA
TTCGCTTTGGTACGGTACTTAAGCACGCGGCCGCCCGCTAAAAACCCCTA
ACGGTGTGATTTAATTTAATCAAACTCATCAAACACAATAAAACTAATCG
CACGAAGATTATTCAACAATCGAACATAGTTCAACTATCAATCGAATCAA
TCTAACCTTACTCAAACGCAATCGAACACAATCGAATATTACCCAGGAAT
CGGCCGTTCGATTGTGATTCGATTACGTTTGACAATCGAATCGCAATTAT
TCGATCACGTTCAATTACGTTCGATTGGTTCAATTGCGATTTTTGTTCGA
AGTTGTTCGATTGACACCGTCTGGACATTGAGGCTGCTTGGTAAAACTAG
TTTCTTAAAAAAAAAAATGTGTAGTTCACAATTATTATATATCGGTTCTT
TTTTGCTAGTCGGGGGAAATATTTTTATATTTAGAACAGATCCCTGATTT
CCAGTTAAAAGCCAGCTGTAACTCAATCATATGGGAAAAAATCCAAGCCG
GAAAGCAATAAAAACTTTGAAATAGATAGCCACAAAGAATAGCTGAAATT
TTTTTACGCTGAAAAATTTGAGAAAGAGAATTTACTCAGAACAGATTAAC
TTCAAATTTCTGTTAGAACAATTGTAAATTTCCAGGTGGAAGGTTCTGCT
TAAGAAGACTCTTTTGATTCAGAGTGGTATCTATGCAAGTGAAGGGTACA
GGTATGCACTTTCTCTAAGGGTACCTTTAATAATCAGCAACAAAATTCAT
AAAAAAGAAATTAGTTTATATCTAAACTACCATTGACAATACCACCAGAT
GAAAGTAGCTTTCTCAACCTGTGATTGGAGGATGGTTTACATAGTCAAAA
AGGTATATGTAAATTTTTTATGTTTTTGTAGTATTTAAAAAAAAGCTAAA
ACGAAAGATGGACATGTATAAAGGTTTAAACCAAGCTGTTCTTGACAAGT
ATATGGAGTTGGATACAAGAGGGTTGATCCAGTTGAATTATATTTGGATT
GACGGGACCGGTGAAACAATGCGCTCCAAAACGAGAACAGTAGATTGGGA
CCCTGTGAATGTTGATCAATTGCCTATTTGGAATTTTGATGGATCCTCAA
CTGGCCAAGCTCAAGGTAATTTTTATGGCTCCATCTTCTCAACTTCAGAT
TTATGTTTGAATTTCAATAAGAGTTTTCACACTGGTTCCTTGGCTTGATT
TGTGAAGATTCTTTAAACGGATTAAAAGTTTTAGTTTTTGGACCCTTGCC
TGGAAGCAAGATTGCTGAAACAAGGGTTAACATATCGGCAGGTCCAAATT
GCATAAAACATAATGCATATTGCATAATGCATAATGCATAATATTTGAAA
AATGTCAATTTTAGAGCCTATAATAAGGAGAATTTTAAAGATAATACTTT
CAACAAAACAAATATACCAATTTCTACCAGAAAATAAAGGGTAGAAAGCT
GTAAACTTGAATTTTGGATACTGAAGAAAATCCATGATCCACTGAAAATG
CTTGTCGCCATTTTGATTTTCATAGTTGTATTTTACAGAACGTAGTATAA
TGTAGAAAAAACACGAAAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTATGTT
ACTTTTCTAACTCGAAAACGTAAATTTTATAGCAAGATCTTTCTGGGTTT
TCTCAGAGATCTTTTCGAATAATTGCTAATAAATTTCAATGGATTTTCCC
TCTTACAAAGCATTAACCATGTGAATGCTTTTTTATTAGATAAGCCAATA
TCCAGCCAATATAAATTAAAGAGCTTCATCCGGAAGCTAGATCAAAGAAA
ATAGACTTCGAATCTTTTTACATTCGAATGTTTATGTTGTTTTTTTATCT
GATGATCTGTTGCATCTTCTTATTATTTATGCTGACGGAAAACCCTTTGT
TGTTATGATTCGAATATTTTCTCTTTCGTTCGGGTCTGTTCGGATTCGAA
AAGTACTCTGATTGGAATGTTTACAAGGAACTCTTCTAAAGAGGTTTTCG
CGGTTTTAGCCTCTGCAAAGGAGAGTTTCAGAGAATATAAAATCGTTATG
TAAATTACACAATACTATTATGCATTATGCAATATGCATTATGTTTTATG
CATTTTGTACCTGCCGGTTAACATATTAAGTAGTCTTCAAAATAATATGA
AGCTGAATAAGTGCCAGCCATAATTGAGTTCAAAGGCTCGGTTCCTGGAT
CATCCATTTACATATTCATTTTTCCTAATCCTAGTGAATTTTTTCTCTTG
TTTTTCTTAGGGAGCAACAGTGATACTTATTTGCATCCTGTAGCCATTTT
TGCTGATCCTTTCAGAAGAGGAAAACATAAGCTCATCTTGTGTGAGACGT
ACACTTATGATCATAAACCAACCAAAACTAACAAACGAAAAATATGTCAG
TATGTTATGGAACAAGCTAAGGTAGATTTTTTGAATTCACAGAGAATACT
CCTTTTTCTTGAGATTTCGAGTGTGAAACTAGCTAAAGCTGAAATACAAA
ATTATTTGAGATTCTTTGTACATGGGCTTCTCTTTAAATCTGAACTTTAT
TCCTTTTACACAAATGTTGTCTCTGCAATATGCCCAATGCAGTTGTTTCT
CAATTCAGTAATTAGGTCCACTTTGAAGACTAAAAAAAGGCTGATTAGTG
TTGAAAAACTAAATTTCCAATCAAGATCTGAATTAGGATTTTAATTTTGG
ATGAATGTTTTTACTTTATTAAGGATGAGAAACCTTGGTTTGGTATGGAA
CAAGAATACACGTTACTGGATCGTGATGGCCACCCCTTAGGTTGGCCAAA
ACATGGCTACCCTGGTCCCCAAGGACCATACTACTGTTCCGTTGGTACAG
GACGTGTTTTTGGTAGAGAAGTAATGGAAGCTCATTACAGAGCTTGTATG
TATGCTGGTGTCAAGATATCGGGAGAAAATGCTGAAGTAATGCCAGCCCA
GGTAATTATTATTGAAAATATGTTCTAATTGCTATTTCTGGAAAGATGCC
AGTTTTATCCAAGAGATACTTTCAGAATAAAATACAGAAAGGTTTAATTT
GAAAAGTGAACATAACTCCCATGATGAGTAAACCTTGCAATATTTATCAA
ATTTTCTTTCTTTCAAGGCATTATTTATTTTTAATTTCATTAATGGAAAG
ATGATAGAAACTGATATAGATATTCTCGATTTTCTTAGTGGGAGTTTCAA
GTTGGACCATGTGAAGGGATTGAGATGGGTGATCATTTATGGATGGCCCG
ATATCTCTTGGAACGTGTGTCAGAAGATTTTGGTATCAGAGTTTCATTGG
ATCCTAAACCAATGCCAGGTGATTGGAATGGTGCCGGATGCCATTGTAAT
TACAGGTGGGTAAAAATAAATTGATACTAAAAGACCATTTGGCTTTGCAT
GGTCTAAATAAGCAAGTTAATAAAGAATTACAGACCCAACAAAGTATGAA
CAAAGAGTCTACTTACATGAAACATCTTCAAACTTATATTCACACGTAAC
CTTGTCTCTGCTTTGATACGACTCTTTTAATTCTGCTTTTCTCACTCATT
GAGCAATAATTTGATGATTTGACTTGCAAACGACTTGATTTGTTGATTGT
AAACGATACCAATGTTCATTTTCTCTGCTCTAGCACCGAAGAAATGAGGA
AAGAAGGTGGCATTACTCATATTTACACTGCAATTGAAAAGTTGGGGAAA
AGACATGATTACCATATCGAAATGTACGATCCTCGCGGTGGACTTGATAA
TCGAAGACGTCTAACAGGCATGTATTATAACTTCATAATCATGTGTTTAA
TCTGTCATTCTTTATCGTTAGTATCAAAGTTTTACCTTATTACACGAATA
TAAGTATGAAAAAATTTAACGGCCTTGAAATTAACACGTCAAAAATTTAC
GCGAATTTTATTGCTTTTTCAAGGACACCATGGCTGGTGGGATTTTTATT
AACACGAAATTTTTCAATTCGTGTTAATAAAATGACTAGTAATATTCGTG
GTAGTCTAAAATAATATCACACAAAAAATATTATGACGTATATATAAGTA
TTATTGACTGGAAACATGTTACCAAATAAGGAAACTGAGATTAAAAATTG
GAAAATGAAATATACTATAGCGTGGGAGAATAAAATCAACCGACAATTTT
GTCGCAGTGCTTTATCTACATTTATGTTCAATACTATCTGTTCGTTCTAT
AGGACGTCATGAGACTTCATCTATCCATGATTTTTCACATGGTGTGGCTC
ACAGAGGGAGCAGTATTCGCGTGCCTCGCCAGTGTGCTGAAGATGGATAT
GGGTACTTTGAAGATCGAAGACCATCCTCTAATTGTGACCCATATTCAGT
CACTGAGGCGCTAGTACGTACTACAATCTTAAATGAGGCCGATACTTCGT
CCGAAGGGAAAGCAGCTACTGTAACGAAATGAGTCAAGGTTTGATATAAT
TATGAATTTAGGTAAGTAGATGTCTTTACAATTTGTAGTGTGTACATTTT
TAGTTATTATTTATATTTTGGCATGTATTTAAAGGTATTGTCTAAACGTT
TTTGTTTTTTATTTATTTGCATTTAATTTATTGGAACTAAATATTTGTAC
ATTTTTATTTCATTTCCAAAGTTTCTTTTTTTTTATTATATAGTTAGTGC
AGAAAAATATTATTGAAAGAATTAACTATAGAGACAAAGTGGTATGTTTC
TGATATTACATTTGCGGGTTTGCAACAACCCACGCTCGAAAGAAGTGGGT
TTTCTTGCATTATTGTGAATTTTGTTATACCGATTAGTCTATAGCTAAGC
TGTTTTTCTTCGGAGGAAGAGATTTTGATGAGGATTAAATATGAAGGATG
GTTTAAAGGAATTAATTTGCTAAGTATTTAATTTGGCGGTCGCAGAATTA
TTTTTGGCCAAAAATCGTTGTTAGATAGGCAAACACTTTTTGCCAAATTT
GCTAAAGCCGCTAAATTTACTTCTCAAATTGCCTTCCTTTCAAAACCTTT
AATACGCTTGAATTTACTTTCGAAATTATCTATCATATGATTTCGTATGA
AAGAAATTTGGCAATAACTGACATCTCTATGCAATTGACAAATCGAGGCT
AATAACATTTCCAAGGTAGCCATATAATAAACATGAACAAATTCCCTAGG
TTTTGGAAATATACCGGGAAAATACGAAAAACTTTTGGCGCCCTTCACCC
AAAAACTCCGACGTTTTATTCGACTCTCTATAATAATTTCGAGCTCTGAT
AGAGCGGTTTAGTTTCAGCTATCTTCTTTTTTGTGTGATTTCCTAGAAAG
TTTATCACTTCGGGTATAAATTAAAAATATTCAGTAAAGTTTCAAACAGC
GTTTTCCTACTTTGAACATGTATAATTATATAAATATTTTTCACGGGAAG
ATTCATTCTTTTTTGTCCATCCTTTCTTAATCCACTCCGTCACTTTGTTT
ATTATTTTTCTTGAATAATGTTTACGTTTTTCGTTAAATTCCCAATTCAT
TCTATTCGATTTGTTTAGTGTTGTTCTTCTATATTTAGTATAGCTTTTTA
TTATTAATGATTAAAACTATCCAATTTTCGGCACTTTTCCGGAAAAATAG
TTTTAAAAGTTTATGGTTTTGCAAGCTATCGTATGTTTTTTTCTAAAAAA
AATTTGCTATGTTAACCAATATGTGATGCTGGATGATTAACATGGCTCCA
CTACCAAATAGTAGGTTTATTGCAGGCCCAGCGGAACAACCGTAAAAGTG
GGGAGGCTGAAGGCTCAAAATGAGATAAAATTCGCTAGAAATTCGAGAAA
AAAATCTCAATTGCTCAAAAGTGGGTTGGCGTAAGTCTTCCCAGTCTCCC
CGTTTTCGCCGGGCCTGTATTACAATAAAATTACATTTCAAATAAATTTT
TCGGTACAACCTATCAAATTTCGTGATAATGAGGGTTAAGGGAGATTCGA
TACGACTTAACCCCTTTTTTTATCTCAAGAACCTTCCCAATCATCTTCGG
AATTGAATATCTATTGATTAAGCAGAGAATTGTAATCTTATTTCAATTAT
TCTAAGCCAACTTAAGAACGAGTTTTGAGG

Coding sequence (CDS) from alignment at sc0000351:288325..295304-

>TCONS_00020313 ID=TCONS_00020313|Name=TCONS_00020313|organism=Clytia hemisphaerica|type=CDS|length=6768bp|location=Sequence derived from alignment at sc0000351:288325..295304- (Clytia hemisphaerica)
GACGTCATGAGACTTCATCTATCCATGATTTTTCACATGGTGTGGCTCAC
AGAGGGAGCAGTATTCGCGTGCCTCGCCAGTGTGCTGAAGATGGATATGG
GTACTTTGAAGATCGAAGACCATCCTCTAATTGTGACCCATATTCAGTCA
CTGAGGCGCTAGTACGTACTACAATCTTAAATGAGGCCGATACTTCGTCC
GAAGGGAAAGCAGCTACTGTAACGAAATGACACCGAAGAAATGAGGAAAG
AAGGTGGCATTACTCATATTTACACTGCAATTGAAAAGTTGGGGAAAAGA
CATGATTACCATATCGAAATGTACGATCCTCGCGGTGGACTTGATAATCG
AAGACGTCTAACAGTGGGAGTTTCAAGTTGGACCATGTGAAGGGATTGAG
ATGGGTGATCATTTATGGATGGCCCGATATCTCTTGGAACGTGTGTCAGA
AGATTTTGGTATCAGAGTTTCATTGGATCCTAAACCAATGCCAGGTGATT
GGAATGGTGCCGGATGCCATTGTAATTACAGGATGAGAAACCTTGGTTTG
GTATGGAACAAGAATACACGTTACTGGATCGTGATGGCCACCCCTTAGGT
TGGCCAAAACATGGCTACCCTGGTCCCCAAGGACCATACTACTGTTCCGT
TGGTACAGGACGTGTTTTTGGTAGAGAAGTAATGGAAGCTCATTACAGAG
CTTGTATGTATGCTGGTGTCAAGATATCGGGAGAAAATGCTGAAGTAATG
CCAGCCCAGGGAGCAACAGTGATACTTATTTGCATCCTGTAGCCATTTTT
GCTGATCCTTTCAGAAGAGGAAAACATAAGCTCATCTTGTGTGAGACGTA
CACTTATGATCATAAACCAACCAAAACTAACAAACGAAAAATATGTCAGT
ATGTTATGGAACAAGCTAAGATGGACATGTATAAAGGTTTAAACCAAGCT
GTTCTTGACAAGTATATGGAGTTGGATACAAGAGGGTTGATCCAGTTGAA
TTATATTTGGATTGACGGGACCGGTGAAACAATGCGCTCCAAAACGAGAA
CAGTAGATTGGGACCCTGTGAATGTTGATCAATTGCCTATTTGGAATTTT
GATGGATCCTCAACTGGCCAAGCTCAAGGACGTCATGAGACTTCATCTAT
CCATGATTTTTCACATGGTGTGGCTCACAGAGGGAGCAGTATTCGCGTGC
CTCGCCAGTGTGCTGAAGATGGATATGGGTACTTTGAAGATCGAAGACCA
TCCTCTAATTGTGACCCATATTCAGTCACTGAGGCGCTAGTACGTACTAC
AATCTTAAATGAGGCCGATACTTCGTCCGAAGGGAAAGCAGCTACTGTAA
CGAAATGACACCGAAGAAATGAGGAAAGAAGGTGGCATTACTCATATTTA
CACTGCAATTGAAAAGTTGGGGAAAAGACATGATTACCATATCGAAATGT
ACGATCCTCGCGGTGGACTTGATAATCGAAGACGTCTAACAGTGGGAGTT
TCAAGTTGGACCATGTGAAGGGATTGAGATGGGTGATCATTTATGGATGG
CCCGATATCTCTTGGAACGTGTGTCAGAAGATTTTGGTATCAGAGTTTCA
TTGGATCCTAAACCAATGCCAGGTGATTGGAATGGTGCCGGATGCCATTG
TAATTACAGGATGAGAAACCTTGGTTTGGTATGGAACAAGAATACACGTT
ACTGGATCGTGATGGCCACCCCTTAGGTTGGCCAAAACATGGCTACCCTG
GTCCCCAAGGACCATACTACTGTTCCGTTGGTACAGGACGTGTTTTTGGT
AGAGAAGTAATGGAAGCTCATTACAGAGCTTGTATGTATGCTGGTGTCAA
GATATCGGGAGAAAATGCTGAAGTAATGCCAGCCCAGGGAGCAACAGTGA
TACTTATTTGCATCCTGTAGCCATTTTTGCTGATCCTTTCAGAAGAGGAA
AACATAAGCTCATCTTGTGTGAGACGTACACTTATGATCATAAACCAACC
AAAACTAACAAACGAAAAATATGTCAGTATGTTATGGAACAAGCTAAGAT
GGACATGTATAAAGGTTTAAACCAAGCTGTTCTTGACAAGTATATGGAGT
TGGATACAAGAGGGTTGATCCAGTTGAATTATATTTGGATTGACGGGACC
GGTGAAACAATGCGCTCCAAAACGAGAACAGTAGATTGGGACCCTGTGAA
TGTTGATCAATTGCCTATTTGGAATTTTGATGGATCCTCAACTGGCCAAG
CTCAAGGACGTCATGAGACTTCATCTATCCATGATTTTTCACATGGTGTG
GCTCACAGAGGGAGCAGTATTCGCGTGCCTCGCCAGTGTGCTGAAGATGG
ATATGGGTACTTTGAAGATCGAAGACCATCCTCTAATTGTGACCCATATT
CAGTCACTGAGGCGCTAGTACGTACTACAATCTTAAATGAGGCCGATACT
TCGTCCGAAGGGAAAGCAGCTACTGTAACGAAATGACACCGAAGAAATGA
GGAAAGAAGGTGGCATTACTCATATTTACACTGCAATTGAAAAGTTGGGG
AAAAGACATGATTACCATATCGAAATGTACGATCCTCGCGGTGGACTTGA
TAATCGAAGACGTCTAACAGTGGGAGTTTCAAGTTGGACCATGTGAAGGG
ATTGAGATGGGTGATCATTTATGGATGGCCCGATATCTCTTGGAACGTGT
GTCAGAAGATTTTGGTATCAGAGTTTCATTGGATCCTAAACCAATGCCAG
GTGATTGGAATGGTGCCGGATGCCATTGTAATTACAGGATGAGAAACCTT
GGTTTGGTATGGAACAAGAATACACGTTACTGGATCGTGATGGCCACCCC
TTAGGTTGGCCAAAACATGGCTACCCTGGTCCCCAAGGACCATACTACTG
TTCCGTTGGTACAGGACGTGTTTTTGGTAGAGAAGTAATGGAAGCTCATT
ACAGAGCTTGTATGTATGCTGGTGTCAAGATATCGGGAGAAAATGCTGAA
GTAATGCCAGCCCAGGGAGCAACAGTGATACTTATTTGCATCCTGTAGCC
ATTTTTGCTGATCCTTTCAGAAGAGGAAAACATAAGCTCATCTTGTGTGA
GACGTACACTTATGATCATAAACCAACCAAAACTAACAAACGAAAAATAT
GTCAGTATGTTATGGAACAAGCTAAGATGGACATGTATAAAGGTTTAAAC
CAAGCTGTTCTTGACAAGTATATGGAGTTGGATACAAGAGGGTTGATCCA
GTTGAATTATATTTGGATTGACGGGACCGGTGAAACAATGCGCTCCAAAA
CGAGAACAGTAGATTGGGACCCTGTGAATGTTGATCAATTGCCTATTTGG
AATTTTGATGGATCCTCAACTGGCCAAGCTCAAGGACGTCATGAGACTTC
ATCTATCCATGATTTTTCACATGGTGTGGCTCACAGAGGGAGCAGTATTC
GCGTGCCTCGCCAGTGTGCTGAAGATGGATATGGGTACTTTGAAGATCGA
AGACCATCCTCTAATTGTGACCCATATTCAGTCACTGAGGCGCTAGTACG
TACTACAATCTTAAATGAGGCCGATACTTCGTCCGAAGGGAAAGCAGCTA
CTGTAACGAAATGACACCGAAGAAATGAGGAAAGAAGGTGGCATTACTCA
TATTTACACTGCAATTGAAAAGTTGGGGAAAAGACATGATTACCATATCG
AAATGTACGATCCTCGCGGTGGACTTGATAATCGAAGACGTCTAACAGTG
GGAGTTTCAAGTTGGACCATGTGAAGGGATTGAGATGGGTGATCATTTAT
GGATGGCCCGATATCTCTTGGAACGTGTGTCAGAAGATTTTGGTATCAGA
GTTTCATTGGATCCTAAACCAATGCCAGGTGATTGGAATGGTGCCGGATG
CCATTGTAATTACAGGATGAGAAACCTTGGTTTGGTATGGAACAAGAATA
CACGTTACTGGATCGTGATGGCCACCCCTTAGGTTGGCCAAAACATGGCT
ACCCTGGTCCCCAAGGACCATACTACTGTTCCGTTGGTACAGGACGTGTT
TTTGGTAGAGAAGTAATGGAAGCTCATTACAGAGCTTGTATGTATGCTGG
TGTCAAGATATCGGGAGAAAATGCTGAAGTAATGCCAGCCCAGGGAGCAA
CAGTGATACTTATTTGCATCCTGTAGCCATTTTTGCTGATCCTTTCAGAA
GAGGAAAACATAAGCTCATCTTGTGTGAGACGTACACTTATGATCATAAA
CCAACCAAAACTAACAAACGAAAAATATGTCAGTATGTTATGGAACAAGC
TAAGATGGACATGTATAAAGGTTTAAACCAAGCTGTTCTTGACAAGTATA
TGGAGTTGGATACAAGAGGGTTGATCCAGTTGAATTATATTTGGATTGAC
GGGACCGGTGAAACAATGCGCTCCAAAACGAGAACAGTAGATTGGGACCC
TGTGAATGTTGATCAATTGCCTATTTGGAATTTTGATGGATCCTCAACTG
GCCAAGCTCAAGGACGTCATGAGACTTCATCTATCCATGATTTTTCACAT
GGTGTGGCTCACAGAGGGAGCAGTATTCGCGTGCCTCGCCAGTGTGCTGA
AGATGGATATGGGTACTTTGAAGATCGAAGACCATCCTCTAATTGTGACC
CATATTCAGTCACTGAGGCGCTAGTACGTACTACAATCTTAAATGAGGCC
GATACTTCGTCCGAAGGGAAAGCAGCTACTGTAACGAAATGACACCGAAG
AAATGAGGAAAGAAGGTGGCATTACTCATATTTACACTGCAATTGAAAAG
TTGGGGAAAAGACATGATTACCATATCGAAATGTACGATCCTCGCGGTGG
ACTTGATAATCGAAGACGTCTAACAGTGGGAGTTTCAAGTTGGACCATGT
GAAGGGATTGAGATGGGTGATCATTTATGGATGGCCCGATATCTCTTGGA
ACGTGTGTCAGAAGATTTTGGTATCAGAGTTTCATTGGATCCTAAACCAA
TGCCAGGTGATTGGAATGGTGCCGGATGCCATTGTAATTACAGGATGAGA
AACCTTGGTTTGGTATGGAACAAGAATACACGTTACTGGATCGTGATGGC
CACCCCTTAGGTTGGCCAAAACATGGCTACCCTGGTCCCCAAGGACCATA
CTACTGTTCCGTTGGTACAGGACGTGTTTTTGGTAGAGAAGTAATGGAAG
CTCATTACAGAGCTTGTATGTATGCTGGTGTCAAGATATCGGGAGAAAAT
GCTGAAGTAATGCCAGCCCAGGGAGCAACAGTGATACTTATTTGCATCCT
GTAGCCATTTTTGCTGATCCTTTCAGAAGAGGAAAACATAAGCTCATCTT
GTGTGAGACGTACACTTATGATCATAAACCAACCAAAACTAACAAACGAA
AAATATGTCAGTATGTTATGGAACAAGCTAAGATGGACATGTATAAAGGT
TTAAACCAAGCTGTTCTTGACAAGTATATGGAGTTGGATACAAGAGGGTT
GATCCAGTTGAATTATATTTGGATTGACGGGACCGGTGAAACAATGCGCT
CCAAAACGAGAACAGTAGATTGGGACCCTGTGAATGTTGATCAATTGCCT
ATTTGGAATTTTGATGGATCCTCAACTGGCCAAGCTCAAGGACGTCATGA
GACTTCATCTATCCATGATTTTTCACATGGTGTGGCTCACAGAGGGAGCA
GTATTCGCGTGCCTCGCCAGTGTGCTGAAGATGGATATGGGTACTTTGAA
GATCGAAGACCATCCTCTAATTGTGACCCATATTCAGTCACTGAGGCGCT
AGTACGTACTACAATCTTAAATGAGGCCGATACTTCGTCCGAAGGGAAAG
CAGCTACTGTAACGAAATGACACCGAAGAAATGAGGAAAGAAGGTGGCAT
TACTCATATTTACACTGCAATTGAAAAGTTGGGGAAAAGACATGATTACC
ATATCGAAATGTACGATCCTCGCGGTGGACTTGATAATCGAAGACGTCTA
ACAGTGGGAGTTTCAAGTTGGACCATGTGAAGGGATTGAGATGGGTGATC
ATTTATGGATGGCCCGATATCTCTTGGAACGTGTGTCAGAAGATTTTGGT
ATCAGAGTTTCATTGGATCCTAAACCAATGCCAGGTGATTGGAATGGTGC
CGGATGCCATTGTAATTACAGGATGAGAAACCTTGGTTTGGTATGGAACA
AGAATACACGTTACTGGATCGTGATGGCCACCCCTTAGGTTGGCCAAAAC
ATGGCTACCCTGGTCCCCAAGGACCATACTACTGTTCCGTTGGTACAGGA
CGTGTTTTTGGTAGAGAAGTAATGGAAGCTCATTACAGAGCTTGTATGTA
TGCTGGTGTCAAGATATCGGGAGAAAATGCTGAAGTAATGCCAGCCCAGG
GAGCAACAGTGATACTTATTTGCATCCTGTAGCCATTTTTGCTGATCCTT
TCAGAAGAGGAAAACATAAGCTCATCTTGTGTGAGACGTACACTTATGAT
CATAAACCAACCAAAACTAACAAACGAAAAATATGTCAGTATGTTATGGA
ACAAGCTAAGATGGACATGTATAAAGGTTTAAACCAAGCTGTTCTTGACA
AGTATATGGAGTTGGATACAAGAGGGTTGATCCAGTTGAATTATATTTGG
ATTGACGGGACCGGTGAAACAATGCGCTCCAAAACGAGAACAGTAGATTG
GGACCCTGTGAATGTTGATCAATTGCCTATTTGGAATTTTGATGGATCCT
CAACTGGCCAAGCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011400XLOC_011400Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020313-proteinTCONS_00020313-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020313-exon-sc0000351-1575043694:295209..295304TCONS_00020313-exon-sc0000351-1575043694:295209..295304Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1575043694:293390..293623TCONS_00020313-exon-sc0000351-1575043694:293390..293623Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1575043694:291984..292144TCONS_00020313-exon-sc0000351-1575043694:291984..292144Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1575043694:291454..291681TCONS_00020313-exon-sc0000351-1575043694:291454..291681Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1575043694:291050..291216TCONS_00020313-exon-sc0000351-1575043694:291050..291216Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1575043694:290638..290771TCONS_00020313-exon-sc0000351-1575043694:290638..290771Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1575043694:288325..290202TCONS_00020313-exon-sc0000351-1575043694:288325..290202Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:295209..295304TCONS_00020313-exon-sc0000351-1510915933:295209..295304Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:293390..293623TCONS_00020313-exon-sc0000351-1510915933:293390..293623Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:291984..292144TCONS_00020313-exon-sc0000351-1510915933:291984..292144Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:291454..291681TCONS_00020313-exon-sc0000351-1510915933:291454..291681Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:291050..291216TCONS_00020313-exon-sc0000351-1510915933:291050..291216Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:290638..290771TCONS_00020313-exon-sc0000351-1510915933:290638..290771Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1510915933:288325..290202TCONS_00020313-exon-sc0000351-1510915933:288325..290202Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:295209..295304TCONS_00020313-exon-sc0000351-1491911889:295209..295304Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:293390..293623TCONS_00020313-exon-sc0000351-1491911889:293390..293623Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:291984..292144TCONS_00020313-exon-sc0000351-1491911889:291984..292144Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:291454..291681TCONS_00020313-exon-sc0000351-1491911889:291454..291681Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:291050..291216TCONS_00020313-exon-sc0000351-1491911889:291050..291216Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:290638..290771TCONS_00020313-exon-sc0000351-1491911889:290638..290771Clytia hemisphaericaexon
TCONS_00020313-exon-sc0000351-1491911889:288325..290202TCONS_00020313-exon-sc0000351-1491911889:288325..290202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:288325..295304 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
815.195	808.902	1018.26	1013.46	16.361	12.916	11.9381	11.9684	9.13508	12.2921	8.35709	6.88111	5.94127	5.40883	5.18915	6.91613	5.9059	7.27366	3.32229	4.02712	6.11365	6.68666	245.299	198.876	8.36316	10.1694	17.3568	18.798	116.034	122.748
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008146Gln_synth_cat_dom
IPR008147Gln_synt_b-grasp
IPR014746Gln_synth/guanido_kin_cat_dom
IPR027302Gln_synth_N_conserv_site
IPR027303Gln_synth_gly_rich_site
Vocabulary: Molecular Function
TermDefinition
GO:0004356glutamate-ammonia ligase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO:0006542glutamine biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006542 glutamine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004356 glutamate-ammonia ligase activity
Blast
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BLAST of TCONS_00020313 vs. Swiss-Prot (Human)
Match: GLNA (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 512.301 bits (1318), Expect = 8.013e-173
Identity = 226/355 (63.66%), Postives = 283/355 (79.72%), Query Frame = 3 
Query:  141 LNQAVLDKYMELDTRGLIQLNYIWIDGTGETMRSKTRTVDWDPVNVDQLPIWNFDGSSTGQAQGSNSDTYLHPVAIFADPFRRGKHKLILCETYTYDHKPTKTNKRKICQYVMEQAKDEKPWFGMEQEYTLLDRDGHPLGWPKHGYPGPQGPYYCSVGTGRVFGREVMEAHYRACMYAGVKISGENAEVMPAQWEFQVGPCEGIEMGDHLWMARYLLERVSEDFGIRVSLDPKPMPGDWNGAGCHCNYSTEEMRKEGGITHIYTAIEKLGKRHDYHIEMYDPRGGLDNRRRLTGRHETSSIHDFSHGVAHRGSSIRVPRQCAEDGYGYFEDRRPSSNCDPYSVTEALVRTTILNE 1205
            LN+ +   YM L     +Q  YIWIDGTGE +R KTRT+D +P  V++LP WNFDGSST Q++GSNSD YL P A+F DPFR+  +KL+LCE + Y+ +P +TN R  C+ +M+   ++ PWFGMEQEYTL+  DGHP GWP +G+PGPQGPYYC VG  R +GR+++EAHYRAC+YAGVKI+G NAEVMPAQWEFQ+GPCEGI MGDHLW+AR++L RV EDFG+  + DPKP+PG+WNGAGCH N+ST+ MR+E G+ +I  AIEKL KRH YHI  YDP+GGLDN RRLTG HETS+I+DFS GVA+R +SIR+PR   ++  GYFEDRRPS+NCDP+SVTEAL+RT +LNE
Sbjct:    9 LNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 363
The following BLAST results are available for this feature:
BLAST of TCONS_00020313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLNA8.013e-17363.66Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
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