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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020289 ID=TCONS_00020289|Name=TCONS_00020289|organism=Clytia hemisphaerica|type=transcript|length=1488bp
TTGCACACAAAAAACAATCTCAATTACACTCTTGAAATCGGAAGAAATTC
TTACCCCAAAACATTTTGACTCAAGAAAATTCGGCCTCAATGGACATTGA
CATCCACAAAGTCAGAGTGTGATGCTCcacaaaaattcttgaaaattcgc
catttgttttgttttgattccccATGCGTGAAAATTCGTGACATTTAACA
TGACTTTAGAATGTCTCGATTAGTCAAATGATCAATGGGTATGCTTATTA
GCTTTTCGCTGTAGTAATCAAGTCAAAGTAGATCGCCATTTTGAAAGTCG
GACTTTCGATATGTCTTTTCAAACATTTCAGTAGGCCCGAAGGTTGAGAA
AGAACGGTGAGTAGTAACCTTCTActtgaaatctttcaaaatctcCTACA
TCTTTGCTCTCACTACTTAGTTGTNCTTCTACTTGAAATCTCTCAAAATC
TCCTACATCTTTGCTCTCACTACTTAGTTGTTAGATAGTCTTTACTGTTC
AATACCTCTACTGTCtcatatttttaagattttgtcagTCCCTTACTGAC
TGCACCGAATATATCATTCATTGTAGGAGCCGAAATGACGAAGTACGCCA
CCGAACCAGAAAACCCAACCAAGTCATGCAAGGCTCGTGGCTCATACTTG
CGTGTTCACTTTAAGAACACACGGGAAACAGCCCAAGCCATCAAAAAGAT
GCACATCCGTAAAGCTTACAGATATCTGAAGGATGTTATCGCTCAAAAAC
AAATTGTTCCATTCAGACGCTTCAGTGGAGGTGTTGGACGTAAAGCTCAG
gctAAAGCATTTGGTCATTCTCAAGGTAGATGGCCAAAAAAGAGTGCAAC
ATTCTTATTGCAACTTTTAAAGAATGCTGAAAGCAATGCCGATGTTAAGG
GATTAGATGTCGACTCCCTTGTCATCGACCATATTCAAGTAAACAGAGCT
CCATACATGAGAAGGCGAACATACCGTGCTCACGGTCGTATTAACCCATA
CATGTCGAGTCCATGCCACGTTGAAATGATCTTATCTGAAAAAGAACAAG
TTGTTCCACGTGCCGAGGAAGAGGTGGAAGTCAAGAAAGTCTCCAAGAAG
AAGCTTGCCCGTGAAAAACTTAAAGCTCGCGAATAAATTCAAATCTCAAC
CTGAAACACCTTTCTTCGTTATTTTCTTATCCAACTCTTTCAATGTGAAG
TTTTCATATCCTGATTCTAATTAGTAGGCCTGATTGATGTAATTAGCTTA
AGAATCAGGGACTAAAATGATGTAAACTGCATTTAGTAACACAAAAACGT
GCAAAATTGGAACGAATCAcataatagcgaggttaagcaagaagctatct
attacgtacggaatctattacgtgagtttttagACTGGATCCGAGGCATT
TTAGCCTGATTCCTAAAGCTTCACGGCATAGAAAAAAAAGTGGTTAAGCA
AAAAGGCGATCTATGacgtatgacgtaatgtttatttt Run BLAST on NCBI transcript from alignment at sc0000351:248892..254797+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020289 ID=TCONS_00020289|Name=TCONS_00020289|organism=Clytia hemisphaerica|type=transcript|length=5906bp|location=Sequence derived from alignment at sc0000351:248892..254797+ (Clytia hemisphaerica)
TTGCACACAAAAAACAATCTCAATTACACTCTTGAAATCGGAAGAAATTC
TTACCCCAAAACATTTTGACTCAAGAAAATTCGGCCTCAATGGACATTGA
CATCCACAAAGTCAGAGTGTGATGCTCcacaaaaattcttgaaaattcgc
catttgttttgttttgattccccATGCGTGAAAATTCGTGACATTTAACA
TGACTTTAGAATGTCTCGATTAGTCAAATGATCAATGGGTATGCTTATTA
GCTTTTCGCTGTAGTAATCAAGTCAAAGTAGATCGCCATTTTGAAAGTCG
GACTTTCGATATGTCTTTTCAAACATTTCAGTAGGCCCGAAGGTTGAGAA
AGAACGGTGAGTAGTAACCTTCTActtgaaatctttcaaaatctcCTACA
TCTTTGCTCTCACTACTTAGTTGTNCTTCTACTTGAAATCTCTCAAAATC
TCCTACATCTTTGCTCTCACTACTTAGTTGTTAGATAGTCTTTACTGTTC
AATACCTCTACTGTCtcatatttttaagattttgtcagTCCCTTACTGAC
TGCACCGAATATATCATTCATTGTAGGAGCCGAAATGACGAAGTACGCCA
CCGAACCAGAAAACCCAACCAAGTCATGCAAGGCTCGTGGCTCATACTTG
CGTGTTCACTTTAAGAACACACGGGAAACAGCCCAAGCCATCAAAAAGAT
GCACATCCGTAAAGCTTACAGATATCTGAAGGATGTTATCGCTCAAAAAC
AAATTGTTCCATTCAGACGCTTCAGTGGAGGTGTTGGACGTAAAGCTCAG
GTGAGATATCAAGACTAAATTTCTTAATTCTTTAAATCTTACAGCTCACA
CTTGATTTACACAGAAAGAAGAGTGTGAAAAACAATGAGATGTCAAAACT
GGGAATGATGTGAAATTGTCGAagcaaaatattgaattttcaaatggaGC
TTATAATAgtatcaaatttgtgacatggAAGCTTGAATAACAGGAGATAG
ATACTTAAACTGGAAATGATTTTTGTCTAAATCAtaatattgttattgat
tggCCTACACGTTATGTTGTTGGATGGAGAATGCATTGAACCTTTCTACA
AGTGAAACATTGGTTTAGCAAAGAATCAAGTAGCATGATGTATAAAGTAT
TGCTTATGGATTATAAATGCTcttcattttgaaattgtttatctattgct
ggAAGTTTGTCATCGCCAATAAAAGCCTGTAACAGTGGAACTGCATTATT
GTTATCAATTAAACTTACTGTTTCTTGTTGTGTTGAGCTGGTTGATTTTG
TTGATCTTGTTTTAAGTGAAGTTTTTCatgctttcagtggagtttgtgga
cgaaattggctgaaaagttttttgtccCAATACTTATATTTTATCGGTAT
GTAGCCCAATGCTGATAAAATATTTGTAAGTTTTTTTGTTGAGGGTCccc
tattctcaacttcagttgagctagaatctgagaatgtctgtgtgtgtgtc
tgtgtgcctgtcaccaaaactttggggcaggctggagacttcaaaaattg
ggctgaaattttgcacacttgatccttgggcaaatccctgggggtgtctt
tttcattttttcaaaatttatttttggggcctggggacgtgttttttcgc
caaaacgaggctaaaactttggggcaggctggagacttcaaaaatggtcc
gatttggctgaaattttgcacacttgatccttaggcaaatccctgggggt
gtttttttcattttttcaaaattttaatttttgcggcctggggacgagtt
tttcgccaaaacaaggctaaaactttggggcaggctggagacttcaaaaa
tggtccgattaggctgaaatttcgcacacttgatccttgggcaaatccct
gggggtgtttttttaattttttcaaaatttaatttttggggcctggggat
gagtttttcgccaaaGCGAGGATAAAACTTaagggcaggctggagactca
aaaatggtccgaattggctgaaattttgcacacttgatccttgggcaaat
ccctgggggtgtttttttcattttttcaaaattttgatttttggggcctg
gggatgagtttttcgccaaaGCGAGGATAAAACTTaagggcaggctggag
actcaaaaatggtccgaattggctgaaattttgcacacttgatccttggg
caaatccctgggggtgtttttttcattttttcaaaattttgatttttggg
gcctggggacaagttttaagcctaaacgaggctaaaacccaaagtgcaat
aatttttcttaagccatcGAGTTAACAATTGGGCCTacaaatgatttcaa
agatactgaagttgagccagtgcggttagcacgttcgacagttatGCATC
CAGGATGGGATTCCTGTTCTTTTAAAATAACTGAAGATTCTCTGTCGGAT
GCAAATATCATATTTGAAACTAGTTTGATGCTGCTTCACATCAATTGATT
CAGCAATAGGGTTTCAAGACATTTTCAGTTGATAGAATGGTACATACTTG
ATCATGGTACATACCTGATAATTGTGGGTTTTCAGCATTTGATACCaaca
ttttttgggaaaaatatttcagggtggtataatatcaaaaatagaaaaaa
ccaACAGAGACAAATTGGTGGAAAGCAACAAAATAATGTGCATGCGACTG
TTTTGTTGATTGGAAAAGGTGTATTGGGTGGGAGTACGAAGACTGAAAGT
TGAAGCCAGTGAAAagctaaattttattaaattaaggAAATGTTCAAATC
TTTTCTTGTTATTTCAGTTGGTTTGAGGGGGAACTAAAgcttttaaaact
taaaaatcacAGTTTTATTGTGTGTTTCCAGGCCACAAAATTGCCAGGTC
TGAAGACATGTTTTTGTGGCCAAGTAACTTTTTGGCCCTTCATTTTGCCC
GGAAACCAGAGTATGCTAAATCTGTGGGGTTTGAggttttcatgaatttt
gaagaAGTTCTCAAGCAGGCAGTACTGCAGTTCCTTGGCAGATATTCTTG
ATTAGGTTCACTTCACCTTATTTTCTGCGTGCTGCAATGCAATATCCCTT
AACATGGGCTAAAAAAATATTGGACAAATAAGCAATAGAAACTCTATGCT
AATCCCTTCCtgttttaaaagtgttttttccAATTCAGGAAGAAGTTACT
GACCTGTGCCAGTCGCAGGAAAGAGGATTGCTAaattgaaattactaaaa
tttgACCTGGGTCTATAAATTTTGTTATTATTAACTGTTAAATGATTATG
TTAACTCTAACGGTcatactttttattttcaggctAAAGCATTTGGTCAT
TCTCAAGGTAGATGGCCAAAAAAGAGTGCAACATTCTTATTGCAACTTTT
AAAGAATGCTGAAAGCAATGCCGATGTTAAGGTAAATCATCGCAATTTTC
CCTAATCCTTAACAAATTATATGAACTCtggcaatattttcaaatgCATT
GTGGTATCTCCATTGCTTTCTACAATAAAGTTCTGGTCGTTTAACCAATG
CTATATCAATATCCAAAGTGTCACATCATCGTTTGGTACTGTTGACTTCT
ACAACTTTATCATGGAATGACATGGGACATGCTATTAGAAATCTTTCTGA
TAATTTcatcaaaactcaaatttttTAAGAGTAGAGGCTTCTGAAAGTCA
CCAACAGAAGAATTAGACAAACAAACATAAAATTGTGGTGTCATCATATG
CAAGTTTTATAATCATTTGAACTCATTAAAAACATCTTAAAATACATTTT
AACCAATTTTGATGTTTCTTATATTTAGGGATTAGATGTCGACTCCCTTG
TCATCGACCATATTCAAGTAAACAGAGCTCCATACATGAGAAGGCGAACA
TACCGTGCTCACGGTCGTATTAACCGTAAGTATCATTTGTGttgtaaagt
ctgtctcaaaataatttgcagtcgcgacaaaaaaggctataacttttgat
agaattcgaattagacaggggttttgtgcttgttgaaaagacaaacagga
gtggaatattatcataaaggaaaaaaaattcgaaaaatattgaaaatgaa
ggagaagaaaatcaacttcttgtagaataatgcaatgattttgattttta
tatcaGAAATTCTTTACTCTTAGAACGtcaaaaatacgtcaaaaatgttc
aatcagtcaaaaaaatacAGCTCAAAACTTTGCCCTGGTTGACTTTaaaa
agggctcttttttgttgtttttttgatgattttttaagtCAATCAGTAAT
AAACTTTGGACTATATCTTTCGTTGGaataaatttctttggaaaatctTT
TAACATTAATGATGTTCTAAAGATCAAGAATATTGCTAATTGATAATTAA
agcacaattattgaagaagttgattttcttcttcttcattttcaatcttc
atttttcaatttttttcgagttttttcTCTATGATAGTATTCCAttcctg
tttgtcttttcaaaaagcacaaaaccgctatctaattAGAATTCGCTCAA
AAGTTATAGCTTTTTTTGTCTcggctgcaaattattttgagacttTAGAG
TGTTATTGGACAGTCCAAAGTCTGTTGAAGTATTCGTGAAAATCCAAAAC
CAAAAGTGATTTTCTTATTGCGGTCTGAGGTCTTTGATAAAGGAAAGGGA
TGGTGcttaaaattaaaagtttttctaataaatgctcccgtttcatatca
ggacagtggcTGCCTAccgtgaatcaccgattaagcgcccgggcgcttat
tttatttttcaggctctgaggggggcgcttattcaagcagGGCACTTATT
CAAGCAGGGcacttattcaagcggggcgcttatttttttatttcagaaat
tcgtatatcaacaaattcggagTCTGCTCAAACTTAacttcaaaaaagga
tgaataaaagaaaaattcaataagaaactgaaaaaaagaaagctaaaaga
ccttgatttttatttttgttccaatttttttcaactgttAATCATCCGAA
GAGAAATTCTTATCCCGGAAATTAGCCTAGGCCACcaattcgaataagcg
cccctccctggagggggcgcttattcgagcggggcgcttataaaattatt
ttaactaaattggGGGctcttattcgagcggggcgcttaatcggtgattt
acggtatTGGTGTATTATGCTTATacaagcaaaaatgtttttctttttct
ctttctgaccaatcttgctccacattcgtgtcaatctCATGTGAAAAAGC
TTATGATTTAAAATCAAGTAAGCAagcgatatcactcttatttaaaacaa
aacgtTTAAGTGACATTTCATTGCTTTAAAGTCAACAACTAACATGAACG
CTTTCTTCTTTCAGCATACATGTCGAGTCCATGCCACGTTGAAATGATCT
TATCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAAGAGGTGGAAGTC
AAGAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACTTAAAGCTCGCGA
ATAAATTCAAATCTCAACCTGAAACACCTTTCTTCGTTATTTTCTTATCC
AACTCTTTCAATGTGAAGTTTTCATATCCTGATTCTAATTAGTAGGCCTG
ATTGATGTAATTAGCTTAAGAATCAGGGACTAAAATGATGTAAACTGCAT
TTAGTAACACAAAAACGTGCAAAATTGGAACGAATCAcataatagcgagg
ttaagcaagaagctatctattacgtacggaatctattacgtgagttttta
gACTGGATCCGAGGCATTTTAGCCTGATTCCTAAAGCTTCACGGCATAGA
AAAAAAAGTGGTTAAGCAAAAAGGCGATCTATGacgtatgacgtaatgtt
tatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020289-exon-sc0000351-1491911889:248892..249691 | TCONS_00020289-exon-sc0000351-1491911889:248892..249691 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1510915933:248892..249691 | TCONS_00020289-exon-sc0000351-1510915933:248892..249691 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1575043694:248892..249691 | TCONS_00020289-exon-sc0000351-1575043694:248892..249691 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1491911889:252224..252322 | TCONS_00020289-exon-sc0000351-1491911889:252224..252322 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1510915933:252224..252322 | TCONS_00020289-exon-sc0000351-1510915933:252224..252322 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1575043694:252224..252322 | TCONS_00020289-exon-sc0000351-1575043694:252224..252322 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1491911889:252720..252816 | TCONS_00020289-exon-sc0000351-1491911889:252720..252816 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1510915933:252720..252816 | TCONS_00020289-exon-sc0000351-1510915933:252720..252816 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1575043694:252720..252816 | TCONS_00020289-exon-sc0000351-1575043694:252720..252816 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1491911889:254306..254797 | TCONS_00020289-exon-sc0000351-1491911889:254306..254797 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1510915933:254306..254797 | TCONS_00020289-exon-sc0000351-1510915933:254306..254797 | Clytia hemisphaerica | exon |
| TCONS_00020289-exon-sc0000351-1575043694:254306..254797 | TCONS_00020289-exon-sc0000351-1575043694:254306..254797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000351 | supercontig | sc0000351:248892..254797 + |
Blast
BLAST of TCONS_00020289 vs. Swiss-Prot (Human)
Match: RL17 (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 277.33 bits (708), Expect = 2.477e-90 Identity = 127/158 (80.38%), Postives = 144/158 (91.14%), Query Frame = 3
Query: 585 MTKYATEPENPTKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAQKQIVPFRRFSGGVGRKAQAKAFGHSQGRWPKKSATFLLQLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHVEMILSEKEQVVP 1058
M +Y+ +PENPTKSCK+RGS LRVHFKNTRETAQAIK MHIRKA +YLKDV QKQ VPFRR++GGVGR AQAK +G +QGRWPKKSA FLL +LKNAESNA++KGLDVDSLVI+HIQVN+AP MRRRTYRAHGRINPYMSSPCH+EMIL+EKEQ+VP
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP 158
The following BLAST results are available for this feature:
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