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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020277 ID=TCONS_00020277|Name=TCONS_00020277|organism=Clytia hemisphaerica|type=transcript|length=1280bp
GTAGAAAGCAGGTGCTACGGTAATTCTTGCTTGAGGTATTGGACCCATTG
AAGCTTGAATTGATTGTTTCTTGAGGAACTTGCATCTCTGACAGCACTTC
AAGATGATCTTGACAGTATTTCTTCCGTCGATGATATAAGCCTTTTTCTT
GACTTCACGTAAAGTGGTTTCTACTCCTGAATGTTTTGAAACACGACTGT
TCCAATGAACATCTGATATGATGCTGAAGGCGATAGGTGAATAACGATCC
ACGAGTGGGACACAGAATGATGTTGTAGATAAATCCAGCATTGCTTCAGT
GAATCTACCAACGATTGTGATTTGGTTTGAGGGCAGAATACGACAATTGA
AGTACAAGACACCATCTTTGTTGACACTAATGGGTTCGTACTTTTTGGTT
GGAACGAACTGAAGGATCTCAGCAGTGGCTTTTTTGAAGAAGTACGTCTC
TGCTTGTTTGATTTCCAGATCTGTAAGATTGGTCGAAGTAGCTCGTTGCT
TCGTTCTCAAGATATTGATAAATCGAATTACGTAACCAAGAATACGAATG
ACTGAGCTGAAATCTCTGTGATTGGGGTCAATTACGTAATTGGAATATTG
ATATCTTTCTTGGACAGCATCTGGCAATTGGATGATGTGATGTAGTTgat
attgtctttctttttgAACTTCTGCGATGTCCTTTTGGCTGAGTCGAAGG
TCCTTGGCTGTATTGGTTGGAAATTCTCCAACGTCTCGAGTCATCCATTC
GTAGCCATTGATCCAAGTGGAATCGTCTGAAAAATCTTGGATGGTTACTC
CCTTCCTCGTCCCCAGATCAGCAATCATGTCGCTTGTGTTCACATAGAAC
CATTGATCCTTTGAGGTAAATCTGTTGATTTCGTTTACTCGATTTCTGAC
CCAGGTCTTGAGAGGTTTTTNCTTTTGAGGTGAATCTGTTGATTTCGTTT
ACTCGATTTCTGACCCAGGTCTTGAGAGGTTTTTCATCGTTGTTGAGCCA
ATGAAGGACAATCTGGCTGTCTGTAAATTTGGTTGACGATTGGTGCAACT
TTTGCAATGATTTTGACAACTTCACTTGAATGAGTATTGACGAGAGCAGC
GTACAATTCCGCTCTGGGCATCGACATATCCTTTGGTACAGTTCTTGATC
TGGCGAAGATTAATTGACAAGAGTAAGTGGAATCTTTACGTAGAAATCTG
GCATAGATCGCGGTGCACGTCATGTGTTGGCTTGCATCAGCGAAATCTAG
GGTGTTGATTTGCAAATTGACAGCATCTTT Run BLAST on NCBI protein sequence of TCONS_00020277-protein >TCONS_00020277-protein ID=TCONS_00020277-protein|Name=TCONS_00020277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MIADLGTRKGVTIQDFSDDSTWINGYEWMTRDVGEFPTNTAKDLRLSQKD
IAEVQKERQYQLHHIIQLPDAVQERYQYSNYVIDPNHRDFSSVIRILGYV
IRFINILRTKQRATSTNLTDLEIKQAETYFFKKATAEILQFVPTKKYEPI
SVNKDGVLYFNCRILPSNQITIVGRFTEAMLDLSTTSFCVPLVDRYSPIA
FSIISDVHWNSRVSKHSGVETTLREVKKKAYIIDGRNTVKIILKCCQRCK
FLKKQSIQASMGPIPQARITVAPAFY Run BLAST on NCBI transcript from alignment at sc0000350:477639..478918 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020277 ID=TCONS_00020277|Name=TCONS_00020277|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at sc0000350:477639..478918 (Clytia hemisphaerica)
AAAGATGCTGTCAATTTGCAAATCAACACCCTAGATTTCGCTGATGCAAG
CCAACACATGACGTGCACCGCGATCTATGCCAGATTTCTACGTAAAGATT
CCACTTACTCTTGTCAATTAATCTTCGCCAGATCAAGAACTGTACCAAAG
GATATGTCGATGCCCAGAGCGGAATTGTACGCTGCTCTCGTCAATACTCA
TTCAAGTGAAGTTGTCAAAATCATTGCAAAAGTTGCACCAATCGTCAACC
AAATTTACAGACAGCCAGATTGTCCTTCATTGGCTCAACAACGATGAAAA
ACCTCTCAAGACCTGGGTCAGAAATCGAGTAAACGAAATCAACAGATTCA
CCTCAAAAGNAAAAACCTCTCAAGACCTGGGTCAGAAATCGAGTAAACGA
AATCAACAGATTTACCTCAAAGGATCAATGGTTCTATGTGAACACAAGCG
ACATGATTGCTGATCTGGGGACGAGGAAGGGAGTAACCATCCAAGATTTT
TCAGACGATTCCACTTGGATCAATGGCTACGAATGGATGACTCGAGACGT
TGGAGAATTTCCAACCAATACAGCCAAGGACCTTCGACTCAGCCAAAAGG
ACATCGCAGAAGTTcaaaaagaaagacaatatcAACTACATCACATCATC
CAATTGCCAGATGCTGTCCAAGAAAGATATCAATATTCCAATTACGTAAT
TGACCCCAATCACAGAGATTTCAGCTCAGTCATTCGTATTCTTGGTTACG
TAATTCGATTTATCAATATCTTGAGAACGAAGCAACGAGCTACTTCGACC
AATCTTACAGATCTGGAAATCAAACAAGCAGAGACGTACTTCTTCAAAAA
AGCCACTGCTGAGATCCTTCAGTTCGTTCCAACCAAAAAGTACGAACCCA
TTAGTGTCAACAAAGATGGTGTCTTGTACTTCAATTGTCGTATTCTGCCC
TCAAACCAAATCACAATCGTTGGTAGATTCACTGAAGCAATGCTGGATTT
ATCTACAACATCATTCTGTGTCCCACTCGTGGATCGTTATTCACCTATCG
CCTTCAGCATCATATCAGATGTTCATTGGAACAGTCGTGTTTCAAAACAT
TCAGGAGTAGAAACCACTTTACGTGAAGTCAAGAAAAAGGCTTATATCAT
CGACGGAAGAAATACTGTCAAGATCATCTTGAAGTGCTGTCAGAGATGCA
AGTTCCTCAAGAAACAATCAATTCAAGCTTCAATGGGTCCAATACCTCAA
GCAAGAATTACCGTAGCACCTGCTTTCTAC Coding sequence (CDS) from alignment at sc0000350:477639..478918 >TCONS_00020277 ID=TCONS_00020277|Name=TCONS_00020277|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000350:477639..478918 (Clytia hemisphaerica)
ATGATTGCTGATCTGGGGACGAGGAAGGGAGTAACCATCCAAGATTTTTC
AGACGATTCCACTTGGATCAATGGCTACGAATGGATGACTCGAGACGTTG
GAGAATTTCCAACCAATACAGCCAAGGACCTTCGACTCAGCCAAAAGGAC
ATCGCAGAAGTTcaaaaagaaagacaatatcAACTACATCACATCATCCA
ATTGCCAGATGCTGTCCAAGAAAGATATCAATATTCCAATTACGTAATTG
ACCCCAATCACAGAGATTTCAGCTCAGTCATTCGTATTCTTGGTTACGTA
ATTCGATTTATCAATATCTTGAGAACGAAGCAACGAGCTACTTCGACCAA
TCTTACAGATCTGGAAATCAAACAAGCAGAGACGTACTTCTTCAAAAAAG
CCACTGCTGAGATCCTTCAGTTCGTTCCAACCAAAAAGTACGAACCCATT
AGTGTCAACAAAGATGGTGTCTTGTACTTCAATTGTCGTATTCTGCCCTC
AAACCAAATCACAATCGTTGGTAGATTCACTGAAGCAATGCTGGATTTAT
CTACAACATCATTCTGTGTCCCACTCGTGGATCGTTATTCACCTATCGCC
TTCAGCATCATATCAGATGTTCATTGGAACAGTCGTGTTTCAAAACATTC
AGGAGTAGAAACCACTTTACGTGAAGTCAAGAAAAAGGCTTATATCATCG
ACGGAAGAAATACTGTCAAGATCATCTTGAAGTGCTGTCAGAGATGCAAG
TTCCTCAAGAAACAATCAATTCAAGCTTCAATGGGTCCAATACCTCAAGC
AAGAATTACCGTAGCACCTGCTTTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020277-exon-sc0000350-1491911889:477639..478918 | TCONS_00020277-exon-sc0000350-1491911889:477639..478918 | Clytia hemisphaerica | exon |
| TCONS_00020277-exon-sc0000350-1510915933:477639..478918 | TCONS_00020277-exon-sc0000350-1510915933:477639..478918 | Clytia hemisphaerica | exon |
| TCONS_00020277-exon-sc0000350-1575043694:477639..478918 | TCONS_00020277-exon-sc0000350-1575043694:477639..478918 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:477639..478918 . |
Blast
The following BLAST results are available for this feature:
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