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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020275 ID=TCONS_00020275|Name=TCONS_00020275|organism=Clytia hemisphaerica|type=transcript|length=2085bp
TTTTCTTGTAGCCTATTGAGATTGTTACGACCCTTAGCTAAGATATCGTT
TAGGCTGTACCCGGAAGATGTTGATTGAGATGCGTCAAAGACGATGCGAC
AGGGTGTGCTTAGAGAGTTTCCCTTCCAGACGGCTCTCCAGGGTATGAAG
TAGTGTATAGGTGAACTGCGAAGTCTTGATTGAACATCTTGAGGTAGGTT
ACGAACAAATTCAACATACCCAAGTTTCTGAAGCTTCCCTTCAGATTGGA
GGATATCTTCTTTGTCAGTGAGGTTTGATGGTTGATTGAGCTTCTTCAAT
TACTGAATGTAAACTTTCATTGCTTTATCTTTATTGTTGGCGAGACGAGT
TGTAGGATCAGCGATGAAGGGTAATGAAGCAGATGAGATGGATTGGTCGA
AGTCGATCTTGACTGAAGAATTGATGAGACTTTGTTCGACTTCTTCTTTG
ATTGAAATAGTTTCGTTTGATGAATCATGTTTACAGTCTTTGCAGCCTCG
ACACTTTGGACATCGATAGTCAATTTCACTTCCTGCTCCTTCCACCTCTT
CGAAGACTTTCATTGAAGTTGACAGGAATGCTGATGTTGAATCTGGTTGG
TATCCCAAAAGAGGAACTTGAGGTTTGACCTCCCTTAGGGTTGGATGAAT
GGCAACGTGGTGGTATTGATGAACATTAGTGAAGGCTTTGTGAGGACCTC
CGACGACACCACGACGACCTGAGGAATCTTGGAAAACTGACTGATACAAC
GTGAGTCCTGATGGTAGCTGATGGATCAATTTTGGATGGTAACGAAGATA
CCTTACACCAATCATAACGTGAACTTCACCACCGANGGTAGCTGGGGCAA
TGGTTGGTTACCACCTGATATTGTGTAGCTTCGCTGAATGTCTTTGAAGA
CTTCGTCAAGTGGATAGGTTGGCATGGTTGATGTGATCCTTTCCAAGCAA
GGACCTGACATTAAGACATCATCACCAACACCACCAAGACTGATAGGATT
GAATGATTCTTGTGAGCATCTGGCACCAAGGAGTTTTACTGCAGATTTGC
TGATGATGAAATCACTGCAGCCAGAATCGAAGAAAACGAGAGGCTTCTTA
CCATCGACGTTGATGCGTTGTAAGGCATAGATTCCTCTGTCATTACAGTC
TTGATTGTGGATCTTGTGGCACTCTGATTCTTCAAGTGTCAAGCTGATGT
TGTGAGCAAATTCTGGTAGTGATGGATTACGTATGAAGCGTTGAATGTAC
TTTGCAAGTAATTGATTGTTTTCGGATTTGTGTTCCTTGCAGACAAGGAA
GTGTTTCTTAACATCATACCTTCGATGAGATGGATGTGGACATACAAAGT
CTCGTTGGCATCTTCCTTCGGCGTGCTTTCCAGTTGTAGCGTCAGCACCA
GGGAAGAGACATTGCATGCAGTAGTTTCTTTCACGAAGGATCTTGAGACG
TTGAGCAGGTGTAGCCAAGACGAACTTTCTGCATGTGAAGTATTGAAGGA
TTTTGGTGCCATTTGGACCAGATGATGGAATGTGACCAATGGTACCAGTG
GGTTCGTTGCAAATTGTGCATGACGTTTCTGGACTCGTGATATGGGACGA
TTATCGTCTGTTGGAGCCTGTGTTTGATCCTGGGCTGCCCGACTTTCTTT
GATCATCCTTTGAATTTGATGCATCCTTAGCAGTTTGGAGGAGTGACTTT
TGTAGATGAACCTTCTTTTCACGTTCGAGGAATGTGATGAGTTTCAACCA
AGTCTGCTTTTCTGATAGGTCATCGTCGATGATGGATGTGAGGAATTTGG
TTGTCCTTTGATTACCAAGAAGGTTGTAGATTGTAGATAGACCATCTCCG
TAGTATAGATGTTCTTCCACTTTGTGATCCTTTGCAAGCCTCATACCATA
GTTTCGTTAATGACGTTGATGATCTTACCAAGGCTGGTTGTCAACTTCTC
TGAATTGTTAGGTTAGTAGACTTGACGTTGTCTAGCTTTGATAACTCTTG
CAACTTTTTGTGGAGCATAATTTTGGCGTCACCAAAAGCATCTTCTAGGT
GGCGCCATATCAGGTCGATATCATCAAGACTTTTG Run BLAST on NCBI protein sequence of TCONS_00020275-protein >TCONS_00020275-protein ID=TCONS_00020275-protein|Name=TCONS_00020275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MQCLFPGADATTGKHAEGRCQRDFVCPHPSHRRYDVKKHFLVCKEHKSEN
NQLLAKYIQRFIRNPSLPEFAHNISLTLEESECHKIHNQDCNDRGIYALQ
RINVDGKKPLVFFDSGCSDFIISKSAVKLLGARCSQESFNPISLGGVGDD
VLMSGPCLERITSTMPTYPLDEVFKDIQRSYTISGGNQPLPQLXSVVKFT
L Run BLAST on NCBI transcript from alignment at sc0000350:474221..476305 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020275 ID=TCONS_00020275|Name=TCONS_00020275|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0000350:474221..476305 (Clytia hemisphaerica)
CAAAAGTCTTGATGATATCGACCTGATATGGCGCCACCTAGAAGATGCTT
TTGGTGACGCCAAAATTATGCTCCACAAAAAGTTGCAAGAGTTATCAAAG
CTAGACAACGTCAAGTCTACTAACCTAACAATTCAGAGAAGTTGACAACC
AGCCTTGGTAAGATCATCAACGTCATTAACGAAACTATGGTATGAGGCTT
GCAAAGGATCACAAAGTGGAAGAACATCTATACTACGGAGATGGTCTATC
TACAATCTACAACCTTCTTGGTAATCAAAGGACAACCAAATTCCTCACAT
CCATCATCGACGATGACCTATCAGAAAAGCAGACTTGGTTGAAACTCATC
ACATTCCTCGAACGTGAAAAGAAGGTTCATCTACAAAAGTCACTCCTCCA
AACTGCTAAGGATGCATCAAATTCAAAGGATGATCAAAGAAAGTCGGGCA
GCCCAGGATCAAACACAGGCTCCAACAGACGATAATCGTCCCATATCACG
AGTCCAGAAACGTCATGCACAATTTGCAACGAACCCACTGGTACCATTGG
TCACATTCCATCATCTGGTCCAAATGGCACCAAAATCCTTCAATACTTCA
CATGCAGAAAGTTCGTCTTGGCTACACCTGCTCAACGTCTCAAGATCCTT
CGTGAAAGAAACTACTGCATGCAATGTCTCTTCCCTGGTGCTGACGCTAC
AACTGGAAAGCACGCCGAAGGAAGATGCCAACGAGACTTTGTATGTCCAC
ATCCATCTCATCGAAGGTATGATGTTAAGAAACACTTCCTTGTCTGCAAG
GAACACAAATCCGAAAACAATCAATTACTTGCAAAGTACATTCAACGCTT
CATACGTAATCCATCACTACCAGAATTTGCTCACAACATCAGCTTGACAC
TTGAAGAATCAGAGTGCCACAAGATCCACAATCAAGACTGTAATGACAGA
GGAATCTATGCCTTACAACGCATCAACGTCGATGGTAAGAAGCCTCTCGT
TTTCTTCGATTCTGGCTGCAGTGATTTCATCATCAGCAAATCTGCAGTAA
AACTCCTTGGTGCCAGATGCTCACAAGAATCATTCAATCCTATCAGTCTT
GGTGGTGTTGGTGATGATGTCTTAATGTCAGGTCCTTGCTTGGAAAGGAT
CACATCAACCATGCCAACCTATCCACTTGACGAAGTCTTCAAAGACATTC
AGCGAAGCTACACAATATCAGGTGGTAACCAACCATTGCCCCAGCTACCN
TCGGTGGTGAAGTTCACGTTATGATTGGTGTAAGGTATCTTCGTTACCAT
CCAAAATTGATCCATCAGCTACCATCAGGACTCACGTTGTATCAGTCAGT
TTTCCAAGATTCCTCAGGTCGTCGTGGTGTCGTCGGAGGTCCTCACAAAG
CCTTCACTAATGTTCATCAATACCACCACGTTGCCATTCATCCAACCCTA
AGGGAGGTCAAACCTCAAGTTCCTCTTTTGGGATACCAACCAGATTCAAC
ATCAGCATTCCTGTCAACTTCAATGAAAGTCTTCGAAGAGGTGGAAGGAG
CAGGAAGTGAAATTGACTATCGATGTCCAAAGTGTCGAGGCTGCAAAGAC
TGTAAACATGATTCATCAAACGAAACTATTTCAATCAAAGAAGAAGTCGA
ACAAAGTCTCATCAATTCTTCAGTCAAGATCGACTTCGACCAATCCATCT
CATCTGCTTCATTACCCTTCATCGCTGATCCTACAACTCGTCTCGCCAAC
AATAAAGATAAAGCAATGAAAGTTTACATTCAGTAATTGAAGAAGCTCAA
TCAACCATCAAACCTCACTGACAAAGAAGATATCCTCCAATCTGAAGGGA
AGCTTCAGAAACTTGGGTATGTTGAATTTGTTCGTAACCTACCTCAAGAT
GTTCAATCAAGACTTCGCAGTTCACCTATACACTACTTCATACCCTGGAG
AGCCGTCTGGAAGGGAAACTCTCTAAGCACACCCTGTCGCATCGTCTTTG
ACGCATCTCAATCAACATCTTCCGGGTACAGCCTAAACGATATCTTAGCT
AAGGGTCGTAACAATCTCAATAGGCTACAAGAAAA Coding sequence (CDS) from alignment at sc0000350:474221..476305 >TCONS_00020275 ID=TCONS_00020275|Name=TCONS_00020275|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000350:474221..476305 (Clytia hemisphaerica)
ATGCAATGTCTCTTCCCTGGTGCTGACGCTACAACTGGAAAGCACGCCGA
AGGAAGATGCCAACGAGACTTTGTATGTCCACATCCATCTCATCGAAGGT
ATGATGTTAAGAAACACTTCCTTGTCTGCAAGGAACACAAATCCGAAAAC
AATCAATTACTTGCAAAGTACATTCAACGCTTCATACGTAATCCATCACT
ACCAGAATTTGCTCACAACATCAGCTTGACACTTGAAGAATCAGAGTGCC
ACAAGATCCACAATCAAGACTGTAATGACAGAGGAATCTATGCCTTACAA
CGCATCAACGTCGATGGTAAGAAGCCTCTCGTTTTCTTCGATTCTGGCTG
CAGTGATTTCATCATCAGCAAATCTGCAGTAAAACTCCTTGGTGCCAGAT
GCTCACAAGAATCATTCAATCCTATCAGTCTTGGTGGTGTTGGTGATGAT
GTCTTAATGTCAGGTCCTTGCTTGGAAAGGATCACATCAACCATGCCAAC
CTATCCACTTGACGAAGTCTTCAAAGACATTCAGCGAAGCTACACAATAT
CAGGTGGTAACCAACCATTGCCCCAGCTACCNTCGGTGGTGAAGTTCACG
TTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020275-exon-sc0000350-1491911889:474221..476305 | TCONS_00020275-exon-sc0000350-1491911889:474221..476305 | Clytia hemisphaerica | exon |
| TCONS_00020275-exon-sc0000350-1510915933:474221..476305 | TCONS_00020275-exon-sc0000350-1510915933:474221..476305 | Clytia hemisphaerica | exon |
| TCONS_00020275-exon-sc0000350-1575043694:474221..476305 | TCONS_00020275-exon-sc0000350-1575043694:474221..476305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:474221..476305 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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