TCONS_00020272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020272
Unique NameTCONS_00020272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020272 ID=TCONS_00020272|Name=TCONS_00020272|organism=Clytia hemisphaerica|type=transcript|length=280bp
TCTCAACAACAGACTCACCAAATACCTCCAAAACAGACTCACCAAATACC
TCCACAACAGACTCATCTGATACCCCCACAAGGACTACCGCTCAGACAAC
AATCCAAATCCCTCAACTACCATTCAACCCAATGCAAACATTCCAGTAGT
GAATAGCTTTGCATTTTTTAACATACAAGGGCTTTGTCCACAAACAGTAC
CCAGCAAAGTTCCCTTTATTAAAGATAATGTTTGTAATGAAAACCAACTT
TTTGTTGGATTGTCAGAAACTTGGTTATAT
Run BLAST on NCBI

transcript from alignment at sc0000350:362864..363143

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020272 ID=TCONS_00020272|Name=TCONS_00020272|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0000350:362864..363143 (Clytia hemisphaerica)
ATATAACCAAGTTTCTGACAATCCAACAAAAAGTTGGTTTTCATTACAAA
CATTATCTTTAATAAAGGGAACTTTGCTGGGTACTGTTTGTGGACAAAGC
CCTTGTATGTTAAAAAATGCAAAGCTATTCACTACTGGAATGTTTGCATT
GGGTTGAATGGTAGTTGAGGGATTTGGATTGTTGTCTGAGCGGTAGTCCT
TGTGGGGGTATCAGATGAGTCTGTTGTGGAGGTATTTGGTGAGTCTGTTT
TGGAGGTATTTGGTGAGTCTGTTGTTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011376XLOC_011376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020272-exon-sc0000350-1491911889:362864..363143TCONS_00020272-exon-sc0000350-1491911889:362864..363143Clytia hemisphaericaexon
TCONS_00020272-exon-sc0000350-1510915933:362864..363143TCONS_00020272-exon-sc0000350-1510915933:362864..363143Clytia hemisphaericaexon
TCONS_00020272-exon-sc0000350-1575043694:362864..363143TCONS_00020272-exon-sc0000350-1575043694:362864..363143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:362864..363143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	2.16791	7.32098	4.17981	2.1497	11.1959	0.679206	3.5725	0	0.657654	0	2.3919	0.741872	1.10208	0.356204	0	0.0254693	0.65536	0	0.435036	0	0.632397	0.584224	0.473711	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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