TCONS_00020258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020258
Unique NameTCONS_00020258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020258 ID=TCONS_00020258|Name=TCONS_00020258|organism=Clytia hemisphaerica|type=transcript|length=289bp
CGATATTAAGATTTTAAGTCTGTTTTTCATAGTTATtgtaaaaattagaa
atttgttGAATCAAGAaagttataattttcaaaaagactttcaaaatgaT
TAAACTGAAAGCGTTCTTGAGAGAGAAGTCCATTTTTATGTTAGGGTCGT
GCCATatattttaatatgttttgtaTACATTTTGTTACTTTTCAGTTATA
GTTTGCTTTAaagatttcgcgattttttaaatttaacttATTATTTTTGT
AGCTTGTACAACGAATTTTTAACTGTGACAACAGTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000350:850..1138

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020258 ID=TCONS_00020258|Name=TCONS_00020258|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0000350:850..1138 (Clytia hemisphaerica)
CTAAACTGTTGTCACAGTTAAAAATTCGTTGTACAAGCTACAAAAATAAT
aagttaaatttaaaaaatcgcgaaatcttTAAAGCAAACTATAACTGAAA
AGTAACAAAATGTAtacaaaacatattaaaatatATGGCACGACCCTAAC
ATAAAAATGGACTTCTCTCTCAAGAACGCTTTCAGTTTAAtcattttgaa
agtctttttgaaaattataacttTCTTGATTCaacaaatttctaattttt
acaATAACTATGAAAAACAGACTTAAAATCTTAATATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011362XLOC_011362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020258-exon-sc0000350-1491911889:850..1138TCONS_00020258-exon-sc0000350-1491911889:850..1138Clytia hemisphaericaexon
TCONS_00020258-exon-sc0000350-1510915933:850..1138TCONS_00020258-exon-sc0000350-1510915933:850..1138Clytia hemisphaericaexon
TCONS_00020258-exon-sc0000350-1575043694:850..1138TCONS_00020258-exon-sc0000350-1575043694:850..1138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:850..1138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.66563	6.59262	5.46552	5.73731	1.78613	0.470475	1.70282	1.06278	4.46444	3.13715	1.78916	3.38097	1.17449	0.381366	1.88039	4.17576	5.73736	1.76277	1.40795	1.80228	2.78815	3.70003	5.08104	1.63763	0	1.26913	16.9272	8.4939	18.016	14.524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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