TCONS_00020255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020255
Unique NameTCONS_00020255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020255 ID=TCONS_00020255|Name=TCONS_00020255|organism=Clytia hemisphaerica|type=transcript|length=1194bp
CTTTTTGTCAAGTTCTGATTTGATAGATATTTTAGTCTTATGAGTTAGAG
AATGAATGGCTTAAAAATGCTTTTTACTGCCTTTTATTTCTCTAGGAAAG
GGTAAAGATACCTTTGATTTTCTCTTTAGAATTTACAAGttgaaaattaa
taataaaGCAACAAAATGTTGAAACATATTCTGATTGTGCACGGCTTCTT
ACTCAGTGGAACAGGCTCCAATATTTACAGCTGCAATGTAGCAATGCAAT
GGAAGAAACAAAACCATGCTATCACCATATTCTGCCAAGACCCTGATGCT
GGAACTTATGATTGGGTTGACGAATTATACACCAAGAATGATGAGTTGCC
CAAAGAGCAAGTAGCCCCTGGTAAAGTTCGTGTCATTTTGCCAGACATTG
CTGACCTTCTTCCTGTTTACCAATACGATGAATACAAAGGATACACCACT
AAAACAATCCCTAACTTCACTGATGAAGAGATCGAAAgACACATCAACAT
GATGGCAAAGGCTGTCAAAGACGTTTGCACACGATGGAAGGTTGATAAAG
TTTTGTCTAACCATGCTCTCTTGCAGCCTATCAACGTCAAAAGAGGGTTA
GAAGGCCTCGACATTCCATTCGACATCAAAATCCATGGCAGTGCTATCAC
CTTCATCTTAAAGAAATTTCCCAAGTATATGCCATACGCTGTCGAAGCTA
TAGAAGCTTCCAATAAAGTCATTGCTGGAACCCTACACGTCGTTGATCAA
GTGTTATCAACTTTCCCAGACATGGATCTTTCAAAGAAGTTGGTCATCGT
TCCCCCGGGTATGGACCCTGACGTTTTCGACCTTTGTACAAGCATCGACA
CAAACAGCNCCCCCGGGTATGGACCCTGACGTTTTCGACCTTTGCACAAG
CATCGACACAAACAGCAAAAAGTTCTTACAATTGTGTGAAAAACATGTTA
ACGCCGACGGAACAGGCCGTGACGCTTCAAAAGTAACCTTACCAGAGAAA
GGAGACACGACGCAAGATTTTCATAACAAATTGGTGGAAATGTCCAAAGA
TTGTAACCAACGTGTTGTCGATTCAgacattttgaagaaattccCAACCA
TTGCTGAAGATGAACCTGTCCTGATTTTCTTCGGAAAATTCCTTTACACT
AAAGGTATCggtgaaattttgatgacgtttccAACAATGGTCAA
Run BLAST on NCBI

transcript from alignment at sc0000350:454549..457531-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020255 ID=TCONS_00020255|Name=TCONS_00020255|organism=Clytia hemisphaerica|type=transcript|length=2983bp|location=Sequence derived from alignment at sc0000350:454549..457531- (Clytia hemisphaerica)
CTTTTTGTCAAGTTCTGATTTGATAGATATTTTAGTCTTATGAGTTAGAG
AATGAATGGCTTAAAAATGCTTTTTACTGCCTTTTATTTCTCTAGGAAAG
GGTAAAGATACCTTTGATTTTCTCTTTAGAATTTACAAGTTGAAAATTAA
TAATAAAGCAACAAAATGTTGAAACATATTCTGATTGTGCACGGCTTCTT
ACTCAGTGGAACAGGCTCCAATATTTACAGCTGCAATGTAGCAATGCAAT
GGAAGAAACAAAACCATGCTATCACCATATTCTGCCAAGACCCTGATGCT
GGAACTTATGATTGGGTTGACGAATTATACACCAAGAATGATGAGTTGCC
CAAAGAGCAAGTAGCCCCTGGTAAAGTTCGTGTCATTTTGCCAGACATTG
CTGACCTTCTTCCTGTTTACCAATACGATGAATACAAAGGATACACCACT
AAAACAATCCCTAACTTCACTGATGAAGAGATCGAAAGGTACTTTAAGGG
CAGAAACTTTCGCGGACAGAAAGTTTCGCGAGACCGAAAAGTCGCGAAAT
TTCGCGGATTTAAGTTTCGCGATTTTTACTTTTGGAAGAAAATTTACGGA
AGAAACTTTCGCGGTTTTTTGTGAATGTTCAATTTTAGTAGCAATAACTT
TTGCGAGTAGCTAGGGAAAGTGAATAAAAAATTATTTCAAATCTCATTTT
TTTCTCCAATCGAAAGAGTGATATGCTAATAAATGAAAAATAAACTATTT
GCACATCTTCCTCCCATTCCGAATCTTAGTCACTGCGATAATATCGATAA
TATCGACTCTCCTAGGCTTTTAAAACTTGGAAAAAACTTTTGCAATTTTT
AAGAAAATTTCATTTTTCGCGAAATTAACTTTTGCGAATTTCTTGTTTAA
TTTCTTACCTGGCAGAAACTTTCGCGAAAAAATGCTAAAAACGCGAAAGT
TTCTGCCCTTAAAGTATTTTTGATTTATGATATTCGTTGCGTAAATATTT
TTAAAGAAGCAGTTCTAAGTTGCTTCACTTTTACCTAATTTATTTAAATT
GACACACAGGTGCATGCATTTATTAGGACACTTGCTTAAATTACTTTATA
CTCTTGACTCGATCATTTACGTACTAATTATTTTTTCGCGTAACTCCTCT
AGCAAACTATTAGTTGAATGACTCGCAAAATACTCACTAACACACATGTA
AACATAACTATTCTCGTTTACGCAGACACATCAACATGATGGCAAAGGCT
GTCAAAGACGTTTGCACACGATGGAAGGTTGATAAAGTTTTGTCTAACCA
TGCTCTCTTGCAGCCTATCAACGTCAAAAGAGGGTTAGAAGGCCTCGACA
TTCCATTCGACATCAAAATCCATGGCAGTGCTATCACCTTCATCTTAAAG
AAATTTCCCAAGTATATGCCATACGCTGTCGAAGCTATAGAAGCTTCCAA
TAAAGTCATTGCTGGAACCCTACACGTCGTTGATCAAGTAGGTTTTCAAT
AGCTCTTAATTCAATTGTATTTTGCTGCCTTTTGGATTTGTTTTTCTGGT
TTGAGTCCCGAATCAATTTTTCTTGGCGTATTCTCTAGTTAAATCTTCAG
TTTCATAATTTGCAATACGTTGAGTAATAACATGTAAAAAGGGACCATTC
TTAACTCGACAAATCTATTCATAGTGTGAACCCCCCCCCTTTTTTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGGCCCCCCCCCCCCCAACTTTTCCAAAAATGCTTTATAGGGG
GGGGGATAGGAGATTTTCCGAAAAAAATTGGGGGCTTAAGATTTTAGGAG
GGTCAAGTAAAAATAGGGGGGATAACAACTTTTCGTCAAAATATCTATCC
TATTTATATTGATTTAGACATTTGGTGTGGGACAACTAAAAAACAAGTGT
AGATAGCTAATTTTTTGCCTGCCGCGCCATGTTAAACTCTTTTTTCATAT
AATTTTTTATACAAATCTCAATGTTTTTGGTTTTGAATGACTGGTGGACT
GCTGCTGTCAATAGCACGGGTTCGAATTTTTTTTTAAATAGAAGGGTATA
CATATAGGGGGTGCAATAAAAATGGGGGGGGGGTTAGACCCCTCTGCACA
CTATGTTATTATTTCCGCCGTTGCAATTAATATATATTTATTTGAAACAG
CTAAAGTGGTTGTATGTGAAATAATTCTTCTAATTCGTTTTAGGTGTTAT
CAACTTTCCCAGACATGGATCTTTCAAAGAAGTTGGTCATCGTTCCCCCG
GGTATGGACCCTGACGTTTTCGACCTTTGTACAAGCATCGACACAAACAG
CNCCCCCGGGTATGGACCCTGACGTTTTCGACCTTTGCACAAGCATCGAC
ACAAACAGCAAAAAGTTCTTACAATTGTGTGAAAAACATGTTAACGCCGA
CGGAACAGGCCGTGACGCTTCAAAAGTAACCTTACCAGAGAAAGGAGACA
CGACGCAAGATTTTCATAACAAATTGGTGGAAATGTCCAAAGATTGTAAC
CAACGTGTTGTCGATTCAGACATTTTGAAGAAATTCCCAACCATTGCTGA
AGATGAACCTGTCCTGATTTTCTTCGGAAAATTCCTTTACACTAAAGGTA
CTTTTTTGTTTATTCATCATATTGGTACTTCAGTTTTTTATAACATTTCC
CATAGCTTATAATTTAAAAAACTTTTTGTCGTGTGTTTTCTTACAAAATT
AAAAGAATGATTTTCACTATAACCGTATTTCTCACAAAATCCTAAATTTA
CTACATTGGTAACGCCAAACTTACGGCCTGAATCTGTAGTCCAATCTTTC
TACTTCTTAGATTGATATCATTTTTAAAAACCTTTTATTCCAGGTATCGG
TGAAATTTTGATGACGTTTCCAACAATGGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011360XLOC_011360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020255-exon-sc0000350-1575043694:457044..457531TCONS_00020255-exon-sc0000350-1575043694:457044..457531Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1575043694:456045..456306TCONS_00020255-exon-sc0000350-1575043694:456045..456306Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1575043694:454835..455238TCONS_00020255-exon-sc0000350-1575043694:454835..455238Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1575043694:454549..454588TCONS_00020255-exon-sc0000350-1575043694:454549..454588Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1510915933:457044..457531TCONS_00020255-exon-sc0000350-1510915933:457044..457531Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1510915933:456045..456306TCONS_00020255-exon-sc0000350-1510915933:456045..456306Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1510915933:454835..455238TCONS_00020255-exon-sc0000350-1510915933:454835..455238Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1510915933:454549..454588TCONS_00020255-exon-sc0000350-1510915933:454549..454588Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1491911889:457044..457531TCONS_00020255-exon-sc0000350-1491911889:457044..457531Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1491911889:456045..456306TCONS_00020255-exon-sc0000350-1491911889:456045..456306Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1491911889:454835..455238TCONS_00020255-exon-sc0000350-1491911889:454835..455238Clytia hemisphaericaexon
TCONS_00020255-exon-sc0000350-1491911889:454549..454588TCONS_00020255-exon-sc0000350-1491911889:454549..454588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:454549..457531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.391	40.7877	25.3978	31.2945	6.5475	8.17037	29.8305	30.3462	28.7607	44.3453	18.7028	17.6159	8.40617	5.14384	13.6288	13.2969	22.8265	16.0208	2.52156	7.03651	1.67268	2.14393	5.79096	6.8522	13.0419	10.5163	5.07441	3.83475	4.56009	2.43818
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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