TCONS_00020253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020253
Unique NameTCONS_00020253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020253 ID=TCONS_00020253|Name=TCONS_00020253|organism=Clytia hemisphaerica|type=transcript|length=2170bp
ACTAGACATGTGTGTTTTAGTTGTGTATACTGAGTctacaattatttttt
tctgattcatCTAATCTATTTACATTCTATTTTCCagaaactaaataaat
aaatagagaAAAATGTTATGTAGAAATAAATTGGGATTAACTTGTCGTGC
GCATGCGCGTATGATATCTACGTCATGTTGTCGAATGAGACGGAAGCCGA
AACCTGAACGTGATATGTCAAAACGGAATTTACAAGGCGAGGCATTGGAG
GAAAGGTTAAAACGAAGAGAAGCTGACATTATTCGGCAACAGCCATACAA
AGAAGCAGTAGCGCGTGTGGTACATCGTTTCGCACAAGAGATCGAAGCGG
AAGAACGGAAGAAACACGACGTTCAAGGTGAACTCATGCAAAGAGAGTTG
GCTGAACGGCAGCAAGCTCTGCAAAATCTCGCAATACTCTCCAAAAGCAA
TgaagaattgaaattgaaaagGGAGAAACAAAGTTTGTTAGACGAAGAGA
AACTTCGTTTAcaagaaagagaagaagaaatACGATTGGAGCAATTAAAA
GCAGAAATCAAAGAACGAAACACCAATATCGTAATAAGAGTAATCGAGGA
AAGCAAGTCGTTCGTTACTAAAGAAAACCTCGATCAAAAAATCGAAGAAG
CACTCGAAAATCCTATTAACTACAATTTCGCTTTGAAAACCAACGGTGAA
AAGATCATTTCTACTAAACCACCTGGTAACTTGGATGGGTGGAAGGGCGC
CAATCCAAGTGCGTACGCCCTGGGTGGAATACAACAAGGAAGCGGTGAgt
ggaatttcatttttcgatcaCAAAAACCACAACAAGAAGAAAGTCAAGat
aattaatattttttataagataatGAATGATAGAAATGTACATACTGTTT
TGcaagaaaaatattaagaaaatataTCTCAAATGAAATATCTGAAATAA
CATGTCATTTCTTCTGAAATTGAGTAACAGTAATTCTTTGTTGGGTAACA
TTCTCTTGTGTTGAGATTGAACTTCTATGAATTACCATTGGTTGCACTGT
ATTACGCATGCGTGAACTACGTTTCGAAAAATTACTATTCAGTGAACTTT
TTGAGGGTTGAAAAATTCTTGAGAAAGCTTTTCGGAATCGTTTTTGTTGT
AGAAAATAGATGAATGGGTTAAATGAACTTTTCGAAAATGAAGCCCATTT
TGATGCCACACTTAGTGTCATTGAGATGCTTTCCATATGGTCTGTGTTTT
GTTCTTTCAACTCCAAAATACGTAAACATGCGTATGGTAGATGACAAATA
ACGAAAGCTCCAATAACGAATAATATTTTACTAGCTGTTCGAATTTCACG
TTGACGAAAACTTTCATGTCTTGATTTTTGATTCATGTTGAATATATTCA
CTGGTAGTATAGCACGTGCGATCCTCCGATTGTGTGAGCGTGCAACACGA
AAAATGTACAAATAAGTCGCTAGAATCACGCACAAAGATAGCAAGAAATT
GCATGAAATCAGGAAAGCCGTATAAATATAAAATCCAGTTTCTTCACTGT
ACGAATAAAAAGTACATGCTAAGTATCTTTGATTGAATGTATACCAGTTA
CAAAAGACTGGGACTAGAGAGAAAACAATAGATTGCACCCAGATGTAAAC
GTTACATTGCGACGCTTTACAAATTGTCATTCTAGCTTTATAGGCTAGTG
GTTTCATCACAGCGGCTAGTCGGTCTAGACTGATAACTGCTAATGCTAAC
ATCGAGGCCAGTTCAACAGACGTTCCCATAAATCCGTTTAGTTTTTGTAA
TGCAACGGGTGGTCTCCAAGACGCTGATACTATGGCAACGAACGAAAAAG
GCATGACGAATACAAGGTTTGTAAGATCGATAATCAATAAATTAATCAAA
AAGATACTAGCGATGTTTCTTCGTAATTGTCTTTCCTTTACTAATACACA
CAACACAACAATATTAGCTAGCGTACCAATCAAAATGATGGCTCCCAAAA
ATACTGCAAAAATGATCTGGTTACTTGTCTGTAACTTCATCTTCGCCAGA
TAAGAATATATCTTCAGTTCTTCTTTTTATTGCTAATCTCAAAACACCAA
GACATCAGTCTAGAATATTTGTTTTCGTACtaataaaaatttaacctttt
ttcaTCGGGCTCGAATTTCT
Run BLAST on NCBI

transcript from alignment at sc0000350:446704..452140-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020253 ID=TCONS_00020253|Name=TCONS_00020253|organism=Clytia hemisphaerica|type=transcript|length=5437bp|location=Sequence derived from alignment at sc0000350:446704..452140- (Clytia hemisphaerica)
ACTAGACATGTGTGTTTTAGTTGTGTATACTGAGTCTACAATTATTTTTT
TCTGATTCATCTAATCTATTTACATTCTATTTTCCAGAAACTAAATAAAT
AAATAGAGAAAAATGTTATGTAGAAATAAATTGGGATTAACTTGTCGTGC
GCATGCGCGTATGATATCTACGTCATGTTGTCGAATGAGACGGAAGCCGA
AACCTGAACGTGATATGTCAAAACGGAATTTACAAGGCGAGGCATTGGAG
GAAAGGTTAAAACGAAGAGAAGCTGACATTATTCGGCAACAGGTATTAGC
AGCCTTGCCATCCCTCACTTTTTAGCTTCCTTGGCTTTTCTTTAGAACCT
AAAAGAAAAGTGGTTTTTCATTATTTGGAGACGATATTTGTTTCAAAATG
TTTCAGTCTACCAAGGAAATGTTTATTGTGCATAACTTGGATATAAAAAA
CACTGTCTCACAGCCCGGTAGAAGTTCTAATGTTTCGAGTTCAAAAACGC
CAGTGGGGATGGTCTTGGAGTGCAATTTATTTCCATTGAATTTTTGAATG
GGGGTGAAAAGTCAATTACCAATGGAGCTGAATTTGTAGGGTATTTTCCC
ACAAGGGATGAAATTAGGCCAAATTTTCCCGTAGGTTAGGGTTTTCACTG
GGTCTGTGACACAGGGGTGTATAATAGGTTGGGAACTGCAAATTAATAAC
CCTTTAGTTAATCAAGGGATCAGTGGTGTAATGGTCGTTGCTCTTGACTC
CCGTCTGAGTGTTCCGAGTTCAATGGTCACCGTATTACCCTGATTCACTT
AGCAAATGAAAGAACTTCTTTCGCCCGGGTCAACCATTACCATGTGAGGG
GATTCAGGTACCCCTACCCCTACCTAGACAAGAGTGTGGGTTCCAGGTAT
TGTGACGTCCTATCTATCAAGAACTTATAAGGGCCAATTTTTTATCCATA
GCCATACAAAGAAGCAGTAGCGCGTGTGGTACATCGTTTCGCACAAGAGA
TCGAAGCGGAAGAACGGAAGAAACACGACGTTCAAGGTGAACTCATGCAA
AGAGAGTTGGCTGAACGGCAGCAAGCTCTGCAAAATCTCGCAATACTCTC
CAAAAGCAATGAAGAATTGAAATTGAAAAGGTATTTTTTTGAGTATTTTA
TATCAGTTAGATTCTGGTGGTTTTATTGTGGTGATCCCATACAAGATAGG
ATGAAAAGGGACAACATGGCACGAGTTATTGAAAGAATGTTACGTATAAC
TTCAGTGTTTTTTTATTTATTTATTCTAAACAAAATATATTGTTCTCACC
AATCCAAACCTACGCCCTTTCTTTGACTACTTTGAAGGAAGCTTTTCGTA
ACCCCCTAGGCTTGATGATTATGTACTCGGATAAAAATCGCTTTATTCAC
TACAACGCCTACACTTTTTATTGAATTACGCTGATCCCAGCTTTTTTAAA
GAACAAGGTCTCTTTTTCTAAATATTCCTGGTTTTCTTTCCGGTATTTAC
CATTAAAATTCTTATATTACTTGAAACAAGAACTAGTAAAATTCCAACAA
TAAGTCAACGTTGGTTTAAATTTGTTGATTTCCAGGGAGAAACAAAGTTT
GTTAGACGAAGAGAAACTTCGTTTACAAGAAAGAGAAGAAGAAATACGAT
TGGAGCAATTAAAAGCAGAAATCAAAGAACGAAACACCAATATCGTAATA
AGAGTAATCGTGAGTAGACTGTCCTTTTTTGTTTCCCCTCAATTTTCTTT
TGCTCCTTTCTTTATCTGTAAGGGCTAACTGAATTAGGGGAAATTATGCC
TGTTTCTTTGGACAGAGGTTTCAATATTTTTGTGGGAAACTGAAAGCTTT
TGTTTGCTATATTGGGGACCTAATTTAGTCTGTGATTGCATAGTTACTAT
GTTTTGAGCAACCTGTAGTCTTCGTTGTATTATATGGCCCTGCCCTCCCT
TTTTATAAAATGGGGAGGGGATGAATAGTTATCTTTAAAATAAAGGGCTC
CAAAACATCATTTAAATATAGGCTCTTATCAATTTTTCCCAGACTCGATA
TCAGGAGTAGTACTCGCAAATAAAATTGTGTTGCTGTACAATAGACATAT
AGACAGCCTTCAGTTAAGAATCTTAAATTTGCATATAGTATTTGTTCTTT
ATATTAGAAGTATTTGTTTTCGTGACGTAATGTTTTAAGGTGTCAATTTT
TACGGCAAGCATTTGCCATAAAAAATGTCCAAATTTGCCAGCAGCTCTTG
TAACTGCGACTGTATTATCAAACAATTCAAAATTGCTGCCATATTTCGGT
GCCTCCTTTGCCTAAAATATTAGGTCATTGATACTTGGAGTATGTTAATT
GATTTGTTGACTCCATAATGAGAGTCATTATAAAGACACCATAGTTTTTT
TTCAAATCGTATAGAAAAATGACCTTCGCACCCATACACACAGATTTACA
AAAAGTCTTGATGCTGTTAAAGGGACATAACAGTACTAGCCTGGATATCC
AAGCTGTAAACTATTTCACAGTCTAGTTTTTGATATTTTATGTTCTGGTT
TACAGCCTGGTCTCTCTAGAGCGATTTGCATTCTCCATATGAGAATGCAG
TATGCTTGCTTGCGCTCACTTCGCTAAAGCCGTAAGGACCAATCTACACA
GTGCGGAGCAATTCTGAAGCAAAAATAGGATAGTCCTCCACTTGCTAGTG
AAGATAGAGCTTTCTGTTACATGAAAATATGAAAAAGAAGAAAACAGAGT
CAAGTTCATTTTCCAAGAAAACATGGCTTTTATTAAGTTCTGTTTTGCTG
CCCTGGGTTGGCTAGGAAAGTTTTGGAAACATGGGTTTGCACTTTCATTC
TCTAGGGAGACCAAGCTCTATAATTTTAGAACTTTGTATGTTGAGTTAAT
TTTTGTTTTTCTAGAATTTTGAGTTTGGATATCCAGGCTATAACAGTACT
TGCGAAATTTGTAAACAAACTGTATGCTGCGGATACAAAATCAAAACAAA
TGTCACATGTCAAAATGAAAAAAATCAAACCAAATATGGCTAATCTTGAT
TGTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTGTTCT
CTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTACTTTAATGT
CCCTTTAACCTTTGATACGTAATCTGTAACCTGTTTGTAACAGTTGCTTT
ACAAGGGTCCGTCTTTTGAGCTTTACCGGATCTTTAACCTCTTGATAGTT
TCTCAATCAAATGAAACACCTCTGCGTTTCTTTCTCAATGTTTCATTATT
TCGAGTTATGAGAAAAAAACTTCATAAGAGATATTATTTTGTCGGATGGT
CGAGATATCCTGCAGGCAGATGGTAATTAATGAAACATTGTGTCTCTCAT
TCAACCAACTATATCATAAAGTGTTTTCACGTAATGGATCACGAAAAAAT
AAAACTAAGATATATCTTTGACCTCGCCAAAACATAACTCCTACTTAAAT
TAAAAAGCTCTACAATAAAAACCACGATATATTGACTTGCTTTGAATACT
AAATTTTGCCGGAAAATCATTTTAAGTCGATAGCTGCACAAATTAAAAAT
ATATTTACGTAATATAAAAACATAATAAATTTTGATAAAAATACTTTTAT
GGAATGACTTAAATGTTAAGATAAACTTAAGATAATGATTTCAGATTTAT
TTAAGCACCAGATTCCCCCCAGATTCTTTGCGGAATTGCGTAAAATTGTC
ATGTCTATTTGTGGTTTTTGTGATTCTTCATTAGTTTTTCCGGGTTGAAA
GGAGGGGCCTGAAATTGGACCATTTTAATGGCTAATTCTTTTCTTTCCAA
TATCATCTTCAGGAGGAAAGCAAGTCGTTCGTTACTAAAGAAAACCTCGA
TCAAAAAATCGAAGAAGCACTCGAAAATCCTATTAACTACAATTTCGCTT
TGAAAACCAACGGTGAAAAGATCATTTCTACTAAACCACCTGGTAACTTG
GATGGGTGGAAGGGCGCCAATCCAAGTGCGTACGCCCTGGGTGGAATACA
ACAAGGAAGCGGTGAGTGGAATTTCATTTTTCGATCACAAAAACCACAAC
AAGAAGAAAGTCAAGATAATTAATATTTTTTATAAGATAATGAATGATAG
AAATGTACATACTGTTTTGCAAGAAAAATATTAAGAAAATATATCTCAAA
TGAAATATCTGAAATAACATGTCATTTCTTCTGAAATTGAGTAACAGTAA
TTCTTTGTTGGGTAACATTCTCTTGTGTTGAGATTGAACTTCTATGAATT
ACCATTGGTTGCACTGTATTACGCATGCGTGAACTACGTTTCGAAAAATT
ACTATTCAGTGAACTTTTTGAGGGTTGAAAAATTCTTGAGAAAGCTTTTC
GGAATCGTTTTTGTTGTAGAAAATAGATGAATGGGTTAAATGAACTTTTC
GAAAATGAAGCCCATTTTGATGCCACACTTAGTGTCATTGAGATGCTTTC
CATATGGTCTGTGTTTTGTTCTTTCAACTCCAAAATACGTAAACATGCGT
ATGGTAGATGACAAATAACGAAAGCTCCAATAACGAATAATATTTTACTA
GCTGTTCGAATTTCACGTTGACGAAAACTTTCATGTCTTGATTTTTGATT
CATGTTGAATATATTCACTGGTAGTATAGCACGTGCGATCCTCCGATTGT
GTGAGCGTGCAACACGAAAAATGTACAAATAAGTCGCTAGAATCACGCAC
AAAGATAGCAAGAAATTGCATGAAATCAGGAAAGCCGTATAAATATAAAA
TCCAGTTTCTTCACTGTACGAATAAAAAGTACATGCTAAGTATCTTTGAT
TGAATGTATACCAGTTACAAAAGACTGGGACTAGAGAGAAAACAATAGAT
TGCACCCAGATGTAAACGTTACATTGCGACGCTTTACAAATTGTCATTCT
AGCTTTATAGGCTAGTGGTTTCATCACAGCGGCTAGTCGGTCTAGACTGA
TAACTGCTAATGCTAACATCGAGGCCAGTTCAACAGACGTTCCCATAAAT
CCGTTTAGTTTTTGTAATGCAACGGGTGGTCTCCAAGACGCTGATACTAT
GGCAACGAACGAAAAAGGCATGACGAATACAAGGTTTGTAAGATCGATAA
TCAATAAATTAATCAAAAAGATACTAGCGATGTTTCTTCGTAATTGTCTT
TCCTTTACTAATACACACAACACAACAATATTAGCTAGCGTACCAATCAA
AATGATGGCTCCCAAAAATACTGCAAAAATGATCTGGTTACTTGTCTGTA
ACTTCATCTTCGCCAGATAAGAATATATCTTCAGTTCTTCTTTTTATTGC
TAATCTCAAAACACCAAGACATCAGTCTAGAATATTTGTTTTCGTACTAA
TAAAAATTTAACCTTTTTTCATCGGGCTCGAATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011359XLOC_011359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020253-exon-sc0000350-1575043694:451849..452140TCONS_00020253-exon-sc0000350-1575043694:451849..452140Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1575043694:451011..451189TCONS_00020253-exon-sc0000350-1575043694:451011..451189Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1575043694:450432..450555TCONS_00020253-exon-sc0000350-1575043694:450432..450555Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1575043694:446704..448278TCONS_00020253-exon-sc0000350-1575043694:446704..448278Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1510915933:451849..452140TCONS_00020253-exon-sc0000350-1510915933:451849..452140Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1510915933:451011..451189TCONS_00020253-exon-sc0000350-1510915933:451011..451189Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1510915933:450432..450555TCONS_00020253-exon-sc0000350-1510915933:450432..450555Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1510915933:446704..448278TCONS_00020253-exon-sc0000350-1510915933:446704..448278Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1491911889:451849..452140TCONS_00020253-exon-sc0000350-1491911889:451849..452140Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1491911889:451011..451189TCONS_00020253-exon-sc0000350-1491911889:451011..451189Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1491911889:450432..450555TCONS_00020253-exon-sc0000350-1491911889:450432..450555Clytia hemisphaericaexon
TCONS_00020253-exon-sc0000350-1491911889:446704..448278TCONS_00020253-exon-sc0000350-1491911889:446704..448278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:446704..452140 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.6455	34.0318	12.2906	10.2809	15.2485	12.2231	24.8413	27.829	15.6114	14.5407	10.7226	9.97653	7.13509	7.3099	11.4031	11.0025	26.6194	29.1633	6.09649	6.13804	11.1249	10.4944	22.2163	17.0296	12.0042	14.3539	4.76299	2.48865	10.241	11.5796
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00020253 vs. Swiss-Prot (Human)
Match: GPR26 (G-protein coupled receptor 26 OS=Homo sapiens GN=GPR26 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.722e-28
Identity = 93/309 (30.10%), Postives = 156/309 (50.49%), Query Frame = -2 
Query: 1108 AIILIGT-----LANIVVLCVLVKERQLRRNIASXXXXXXXXXXXXXLVFVMPFSFVAIVSASWRPPVALQKLNGFMGTSVELASMLALAVISLDRLAAVMKPLAYKARMTICKASQCNVYIWVQSIVFSLVPVFCNWYTFNQRYLACTFYSY--SEETGFYIYTAFLISCNFLLSLCVILATYLYIFRVARSHNRRIA-----RAILPVNIFNMNQKSRHESFRQREIRTASKILFVIGAFVICHLPYACLRILELKEQN--TDHMESISMTLXXXXXXXXXXXXXFNPFIYFLQQKRFRKAFSRIFQ 1992
            A +L+GT     L+N +VL  L+    +RR   ++F +NL   +L   V  MP +   +V+        L +L  F+ T +   SML++A +S+DR  AV+ PL+Y+A+M +  A+    Y W+ ++ F    +  +W  F+Q Y +CT  S    E   F ++T    + +FLLS  V+  TYL + +VAR H +RI        +L V++    ++   E  ++R  R   KI   IG F++C  PY   R++EL        H   +S  L       ++SK++ +PF+Y L + ++RK+   I  
Sbjct:    9 AGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNMPLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRLRDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDERLRFAVFTGAFHALSFLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRATKKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCL-------AYSKAASDPFVYSLLRHQYRKSCKEILN 310
The following BLAST results are available for this feature:
BLAST of TCONS_00020253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPR268.722e-2830.10G-protein coupled receptor 26 OS=Homo sapiens GN=G... [more]
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