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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020244 ID=TCONS_00020244|Name=TCONS_00020244|organism=Clytia hemisphaerica|type=transcript|length=1166bp
TTTCAAAGGGGCTCCGACGGTAAACGACGATATTGCTAGACGACGGCACT
TCTTCACCACATTTCAAAAGGATTACAGGAAAATTTTGTTATCCAAAAGG
ATCTCTGGAGGATGATGGAACACTGAAGCTTTGTACTGAATGTTATGTTC
AAATCGATCTTGGACCAAGGCATTATCCAAGGTACATCAACGAAATCGAA
TGTGGACAGAACTGGCCGAATGATTATTTCTGTTTAACACATGAAGGTGT
TTGTGCACCCAAAGTCATTTATATTACCTTCTTGTACGATCGACGGAACG
AAGGGGAGACACATCTTTATAATTGGATTGAATACATGCAACCGTTGACT
GTGGGGTGTAATTGTCAAATACGTCAAGAGTCGTTATTCAAAATGTTTAT
TTAAAACAACTGTATCGTCAGAGGAAGTGAGAGCTTTGGTGTTTAGTCAG
GATTTATGGGGGATCTAACTTTCATCAAACAGTTTCAAGACATTTTTACT
GAGGAAAGGAGCAATACGTTCTTGAATGGAAAATTCGTTGAATGTTGGAC
CATTAGAAAATATAGGTGTTATAAACAAGATTTTATTGAAGGCATCACAT
TtcattttacaaatattttgttaaaagttaATAAAACTAACTAAATCTTA
CAAAGAAGAAAGACAGCATACTAATCAAGGATAGCTCTTGTTTTTCCGAA
ATTTTGACCTGCTTGCGATGCTCCCTTGTTCCATCCTGCTTGTAGACCGA
TATGCGAATTTCCCTCTCGAAGTTGTTCCTCTGTGAAATTCCGTTTATTT
TCTTCTGATTCCTTTGGGCCGATACCTCTCTTTCCCTTTTGGCTTACTTT
ACGTCCAAGAGCAAAGAGAGTAGTCAATACTTCAGCCATATTGATTCCGT
CATATAAGGACACTGTTTGGAAAAGATCGACTTTCTTGCATCCATAATTT
TCGCAAGCTTTCAAGAAATTATCAATATTTTCCATTTGCTTGAAagcgat
ttcactttcgttgATTTTCTTGACGCTCCCTGGTTCAATAGCGTTGATGA
GTTGACAAAGGATTTTTCCATCCTTGAGTTTGGCTTGAAGACTTTCAGCA
CCTCGTACATCCTCTAAATCACAGTCTTTGACATGGTGCATGATCCATTC
GATAGCTTCTTGTTCT Run BLAST on NCBI transcript from alignment at sc0000350:403655..405682- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020244 ID=TCONS_00020244|Name=TCONS_00020244|organism=Clytia hemisphaerica|type=transcript|length=2028bp|location=Sequence derived from alignment at sc0000350:403655..405682- (Clytia hemisphaerica)
TTTCAAAGGGGCTCCGACGGTAAACGACGATATTGCTAGGTAGGCGGTAC
TGCACCCTTCACTGGATGCAATAAGAGATTTCCAACCCTGGAAATATCTT
GAAAATATCTTTTGTAAATATTATGGAAATACGACTTTTCTATATTTCCA
AAGTTGTGGAAATATCATATTTCATGATATTTCATGATATTTCCAATTCT
AAAATTCATTGAAACATCATATTTTCAAGACATTTCCAGGATTGGAAATC
TCTTATTTCGCCCAGTGCTTGTATCAGTTAAAAAAGAGCAAATTAAAGGT
AGCTAAACGACATAAAGCTGTATCATTTGGAGTGTAGCCATGTAAACTTG
ACAGTATTTATTTTAAGACGACGGCACTTCTTCACCACATTTCAAAAGGA
TTACAGGAAAATTTTGTTATCCAAAAGGATCTCTGGAGGATGATGGAACA
CTGAAGCTTTGTACTGAATGTTATGTTCAAATCGATCTTGGACCAAGGTA
CAATAATGGACAAAAATGTTGAGACAAAAGCTAATTCTAAGCTGCTTCCA
CCCTTTCCCCCATTTGCAATGTTCAATATTTGGTGTGACGGCCTTGCGGA
CTGAATGTTGCAGCTGGAGAGAGGGGCCTATTTTATACATTTTTACTGCA
AATTCCTGTGTTTTTCTCAAACATTTTTGTCCAAGATTGTAGTTTATTTT
ACGCTTATTTCTTATAAACACCAAGAAACACCCCTGTCCCAATGACCTGA
ACTTGGACAGATTTACTGTTTTAAAAGCCTGATTCTCAAGACGTTCTAAA
AAGAGCCTTAGTATCAAGAGGCAGTTTTGAAACTCAGACTCGCCTAAAGG
TTAACAGTAAAACCAGCTATGTTTTTAAGACTTAATTGAAAATATCTAAC
GTGAAATCTTCCTCTTTCTAAAAACAACTGAAAATTTGAAACAATCATCT
TTGAAAAAAGTATTATGCCAAGTGAATTTATCCAACTATGTTTTTTTTTA
CCTTGAACTAACTAAACGTTTTCTCATTAAGGCATTATCCAAGGTACATC
AACGAAATCGAATGTGGACAGAACTGGCCGAATGATTATTTCTGTTTAAC
ACATGAAGGTGTTTGTGCACCCAAAGTCATTTATATTACCTTCTTGTACG
ATCGACGGAACGAAGGGGAGACACATCTTTATAATTGGATTGAATACATG
CAACCGTTGACTGTGGGGTGTAATTGTCAAATACGTCAAGAGTCGTTATT
CAAAATGTTTATTTAAAACAACTGTATCGTCAGAGGAAGTGAGAGCTTTG
GTGTTTAGTCAGGATTTATGGGGGATCTAACTTTCATCAAACAGTTTCAA
GACATTTTTACTGAGGAAAGGAGCAATACGTTCTTGAATGGAAAATTCGT
TGAATGTTGGACCATTAGAAAATATAGGTGTTATAAACAAGATTTTATTG
AAGGCATCACATTTCATTTTACAAATATTTTGTTAAAAGTTAATAAAACT
AACTAAATCTTACAAAGAAGAAAGACAGCATACTAATCAAGGATAGCTCT
TGTTTTTCCGAAATTTTGACCTGCTTGCGATGCTCCCTTGTTCCATCCTG
CTTGTAGACCGATATGCGAATTTCCCTCTCGAAGTTGTTCCTCTGTGAAA
TTCCGTTTATTTTCTTCTGATTCCTTTGGGCCGATACCTCTCTTTCCCTT
TTGGCTTACTTTACGTCCAAGAGCAAAGAGAGTAGTCAATACTTCAGCCA
TATTGATTCCGTCATATAAGGACACTGTTTGGAAAAGATCGACTTTCTTG
CATCCATAATTTTCGCAAGCTTTCAAGAAATTATCAATATTTTCCATTTG
CTTGAAAGCGATTTCACTTTCGTTGATTTTCTTGACGCTCCCTGGTTCAA
TAGCGTTGATGAGTTGACAAAGGATTTTTCCATCCTTGAGTTTGGCTTGA
AGACTTTCAGCACCTCGTACATCCTCTAAATCACAGTCTTTGACATGGTG
CATGATCCATTCGATAGCTTCTTGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020244-exon-sc0000350-1575043694:405644..405682 | TCONS_00020244-exon-sc0000350-1575043694:405644..405682 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1575043694:405186..405315 | TCONS_00020244-exon-sc0000350-1575043694:405186..405315 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1575043694:403655..404651 | TCONS_00020244-exon-sc0000350-1575043694:403655..404651 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1510915933:405644..405682 | TCONS_00020244-exon-sc0000350-1510915933:405644..405682 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1510915933:405186..405315 | TCONS_00020244-exon-sc0000350-1510915933:405186..405315 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1510915933:403655..404651 | TCONS_00020244-exon-sc0000350-1510915933:403655..404651 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1491911889:405644..405682 | TCONS_00020244-exon-sc0000350-1491911889:405644..405682 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1491911889:405186..405315 | TCONS_00020244-exon-sc0000350-1491911889:405186..405315 | Clytia hemisphaerica | exon |
| TCONS_00020244-exon-sc0000350-1491911889:403655..404651 | TCONS_00020244-exon-sc0000350-1491911889:403655..404651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:403655..405682 - |
Blast
BLAST of TCONS_00020244 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3) HSP 1 Score: 135.961 bits (341), Expect = 2.939e-37 Identity = 81/173 (46.82%), Postives = 101/173 (58.38%), Query Frame = -2
Query: 677 EQEAIEWIMHHVKDCDLEDVRGAESLQAKLKDGKILCQLINAIEP---GSVKKINESEIAFKQMENIDNFLKACENYGCKKVDLFQTVSLYDGINMAEVLTTLFALGRKVSQK------GKRGIGPKESEENKRNFTEEQLREGNSHIGLQAGWNKGASQAGQN-FGKTRAIL 1165
EQ I+WI + G E+ Q LKDG +LC+LINA+ P VKKI S +AFKQME I FL+A E YG D+FQTV L++G NMA V TL LG + G PK+S+EN RNF++ QL+EG + IGLQ G N+GASQAG +G R IL
Sbjct: 27 EQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199
The following BLAST results are available for this feature:
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