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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020220 ID=TCONS_00020220|Name=TCONS_00020220|organism=Clytia hemisphaerica|type=transcript|length=3704bpRun BLAST on NCBI protein sequence of TCONS_00020220-protein >TCONS_00020220-protein ID=TCONS_00020220-protein|Name=TCONS_00020220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=756bp MAVVYDVSYLEREIDTKGPMLLEEIERANRLARSSLRRKSVEEDEVLRSERun BLAST on NCBI transcript from alignment at sc0000350:225781..232752- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020220 ID=TCONS_00020220|Name=TCONS_00020220|organism=Clytia hemisphaerica|type=transcript|length=6972bp|location=Sequence derived from alignment at sc0000350:225781..232752- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000350:225781..232752- >TCONS_00020220 ID=TCONS_00020220|Name=TCONS_00020220|organism=Clytia hemisphaerica|type=CDS|length=13626bp|location=Sequence derived from alignment at sc0000350:225781..232752- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020220 vs. Swiss-Prot (Human)
Match: ZN726 (Zinc finger protein 726 OS=Homo sapiens GN=ZNF726 PE=2 SV=4) HSP 1 Score: 197.593 bits (501), Expect = 3.467e-52 Identity = 100/188 (53.19%), Postives = 122/188 (64.89%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKCG-CGEGWATQSELFKH 2679
PYKC +C +F S NL H++IHT +PYKC +C AF + LTTH+R HTGEKPYKC CG F Q + L H + HTG+KP+KC+ C AFI SS L +H R+HTGEKPYKC C K F S NLS+H +HTGEKPYKC C +F+ SNL TH H P+KC CG+ + S LFKH
Sbjct: 424 PYKCEECGKAFIWSSNLTEHKKIHTREKPYKCEECSKAFSRSSALTTHKRMHTGEKPYKCEECGKAFSQSSTLTAHKIIHTGEKPYKCEECGKAFILSSTLSKHKRIHTGEKPYKCEECGKTFNQSSNLSTHKIIHTGEKPYKCEECGKAFNRSSNLSTHKIIHTGEKPYKCDECGKSFIWSSTLFKH 611 HSP 2 Score: 187.578 bits (475), Expect = 6.303e-49 Identity = 95/192 (49.48%), Postives = 122/192 (63.54%), Query Frame = 1
Query: 2113 SVSNPYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
S PYKC +C +F +L H+ IHTG +PYKC +C AFI + LT H+R HTGEKPYKC CG F + +NL +H + HTG+KP+KC+ C AFI SS+L H ++HT EKPYKC C+K F+ S L++H +MHTGEKPYKC C +FS S L H H P+KC CG+ + S L KH
Sbjct: 336 SGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIWPSTLTKHKRIHTGEKPYKCEECGKAFHRSSNLTKHKIIHTGEKPYKCEECGKAFIWSSNLTEHKKIHTREKPYKCEECSKAFSRSSALTTHKRMHTGEKPYKCEECGKAFSQSSTLTAHKIIHTGEKPYKCEECGKAFILSSTLSKH 527 HSP 3 Score: 185.267 bits (469), Expect = 3.492e-48 Identity = 94/188 (50.00%), Postives = 119/188 (63.30%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
PYKC +C +F S L RH+R+H+G +PYKC +C AF LTTH+ HTGEKPYKC CG FI + L +H HTG+KP+KC+ C AF SS+L +H +HTGEKPYKC C K F S NL+ H K+HT EKPYKC C+ +FS S L TH + H P+KC CG+ ++ S L H
Sbjct: 312 PYKCEECGKAFVWSSTLTRHKRLHSGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIWPSTLTKHKRIHTGEKPYKCEECGKAFHRSSNLTKHKIIHTGEKPYKCEECGKAFIWSSNLTEHKKIHTREKPYKCEECSKAFSRSSALTTHKRMHTGEKPYKCEECGKAFSQSSTLTAH 499 HSP 4 Score: 178.718 bits (452), Expect = 3.402e-46 Identity = 91/191 (47.64%), Postives = 117/191 (61.26%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHVL-----PFKC-GCGEGWATQSELFKH 2679
PYKC +C +F S L H+ IHTG +PYKC +C AFI + L+ H+R HTGEKPYKC CG F Q +NL H + HTG+KP+KC+ C AF SS+L H +HTGEKPYKC C K F S L H ++HTGEKPYKC C +F+H S + H++ + P+KC CG+ + S KH
Sbjct: 480 PYKCEECGKAFSQSSTLTAHKIIHTGEKPYKCEECGKAFILSSTLSKHKRIHTGEKPYKCEECGKTFNQSSNLSTHKIIHTGEKPYKCEECGKAFNRSSNLSTHKIIHTGEKPYKCDECGKSFIWSSTLFKHKRIHTGEKPYKCEECGKAFNH-SQILLHIRHKRMHTGEKPYKCEECGKSFNLSSTFIKH 669 HSP 5 Score: 177.178 bits (448), Expect = 1.121e-45 Identity = 92/188 (48.94%), Postives = 114/188 (60.64%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
PYKC +C +F S NL +H+ IHTG +PYKC +C AFI + LT H++ HT EKPYKC C F + + L H HTG+KP+KC+ C AF SS L H +HTGEKPYKC C K F S LS H ++HTGEKPYKC C +F+ SNL TH H P+KC CG+ + S L H
Sbjct: 396 PYKCEECGKAFHRSSNLTKHKIIHTGEKPYKCEECGKAFIWSSNLTEHKKIHTREKPYKCEECSKAFSRSSALTTHKRMHTGEKPYKCEECGKAFSQSSTLTAHKIIHTGEKPYKCEECGKAFILSSTLSKHKRIHTGEKPYKCEECGKTFNQSSNLSTHKIIHTGEKPYKCEECGKAFNRSSNLSTH 583 HSP 6 Score: 173.326 bits (438), Expect = 1.788e-44 Identity = 89/188 (47.34%), Postives = 113/188 (60.11%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHVL--PFKC-GCGEGWATQSELFKH 2679
P KC +C +F L H+R+H G +PYKC +C AF+ + LT H+R H+GEKPYKC C F Q +L H + HTG+KP+KC+ C AFI S L +H R+HTGEKPYKC C K F S NL+ H +HTGEKPYKC C +F SNL H K H P+KC C + ++ S L H
Sbjct: 284 PCKCEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRHKRLHSGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIWPSTLTKHKRIHTGEKPYKCEECGKAFHRSSNLTKHKIIHTGEKPYKCEECGKAFIWSSNLTEHKKIHTREKPYKCEECSKAFSRSSALTTH 471 HSP 7 Score: 170.244 bits (430), Expect = 2.147e-43 Identity = 87/188 (46.28%), Postives = 109/188 (57.98%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
PYKC +C +F S L H+RIHTG +P KC +C AF + LT H+R H GEKPYKC CG F+ + L RH H+G+KP+KC+ C AF L H +HTGEKPYKC C K F L+ H ++HTGEKPYKC C +F SNL H H P+KC CG+ + S L +H
Sbjct: 256 PYKCEECGKAFSQSSTLTIHKRIHTGEKPCKCEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRHKRLHSGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIWPSTLTKHKRIHTGEKPYKCEECGKAFHRSSNLTKHKIIHTGEKPYKCEECGKAFIWSSNLTEH 443 HSP 8 Score: 169.088 bits (427), Expect = 4.738e-43 Identity = 91/205 (44.39%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 2074 NGESATKAKNNNQSVSNPYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
N S + PYKC + +F S N H+ HTG +PYKC +C AF + LT H+R HTGEKP KC CG F Q + L H H G+KP+KC+ C AF+ SS L RH R+H+GEKPYKC C K F+ G+L++H +HTGEKPYKC C +F S L H + H P+KC CG+ + S L KH
Sbjct: 211 NWSSTLTNHKKTHTEEKPYKCEEYGKAFNQSSNYTTHKVTHTGEKPYKCEECGKAFSQSSTLTIHKRIHTGEKPCKCEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRHKRLHSGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIWPSTLTKHKRIHTGEKPYKCEECGKAFHRSSNLTKH 415 HSP 9 Score: 160.229 bits (404), Expect = 3.389e-40 Identity = 87/192 (45.31%), Postives = 109/192 (56.77%), Query Frame = 1
Query: 2113 SVSNPYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
+ YKC +C +F S L H++ HT +PYKC + AF + TTH+ THTGEKPYKC CG F Q + L H HTG+KP KC+ C AF S L H R+H GEKPYKC C K F S L+ H ++H+GEKPYKC C +FS +L TH H P+KC CG+ + S L KH
Sbjct: 196 TTEKSYKCKECGKTFNWSSTLTNHKKTHTEEKPYKCEEYGKAFNQSSNYTTHKVTHTGEKPYKCEECGKAFSQSSTLTIHKRIHTGEKPCKCEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRHKRLHSGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIWPSTLTKH 387 HSP 10 Score: 149.443 bits (376), Expect = 1.095e-36 Identity = 83/193 (43.01%), Postives = 108/193 (55.96%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKCGCGEGWATQSELFKHMETCKV 2697
P+KC C SF + +H+ I+T + YKC +C F + LT H++THT EKPYKC G F Q +N H +THTG+KP+KC+ C AF SS L H R+HTGEKP KC C K F+ L+ H +MH GEKPYKC C +F S L H + H P+KC E A F H+ T ++
Sbjct: 172 PFKCKNCVKSFCMFSHKTQHKSIYTTEKSYKCKECGKTFNWSSTLTNHKKTHTEEKPYKCEEYGKAFNQSSNYTTHKVTHTGEKPYKCEECGKAFSQSSTLTIHKRIHTGEKPCKCEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRHKRLHSGEKPYKC---EECAKAFSQFGHLTTHRI 361 HSP 11 Score: 144.05 bits (362), Expect = 4.812e-35 Identity = 75/167 (44.91%), Postives = 97/167 (58.08%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLK--RHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV 2619
PYKC +C +F S NL H+ IHTG +PYKC +C +FI + L H+R HTGEKPYKC CG F L RH HTG+KP+KC+ C +F SS +H +HTG K YKC C K F S L+ H K+H G++PYK +F+ S+L T H+
Sbjct: 564 PYKCEECGKAFNRSSNLSTHKIIHTGEKPYKCDECGKSFIWSSTLFKHKRIHTGEKPYKCEECGKAFNHSQILLHIRHKRMHTGEKPYKCEECGKSFNLSSTFIKHKVIHTGVKLYKCEECGKVFFWSSALTRHKKIHAGQQPYKWEKIGKAFNQSSHLTTDKITHI 730 HSP 12 Score: 132.494 bits (332), Expect = 2.437e-31 Identity = 75/186 (40.32%), Postives = 101/186 (54.30%), Query Frame = 1
Query: 2131 KCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQLTTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKCNLCNASFSHQSNLKTHVKRHV--LPFKC-GCGEGWATQSELFKH 2679
+C + F NL R++ HT +P+KC C +F + T H+ +T EK YKC CG F + L H THT +KP+KC+ AF SS+ H HTGEKPYKC C K F+ S L+ H ++HTGEKP KC C +FS S L H + H+ P+KC CG+ + S L +H
Sbjct: 146 QCGKYLKVFYKFINLNRYKIRHTRKKPFKCKNCVKSFCMFSHKTQHKSIYTTEKSYKCKECGKTFNWSSTLTNHKKTHTEEKPYKCEEYGKAFNQSSNYTTHKVTHTGEKPYKCEECGKAFSQSSTLTIHKRIHTGEKPCKCEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRH 331 HSP 13 Score: 129.413 bits (324), Expect = 2.059e-30 Identity = 67/146 (45.89%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 2125 PYKCSQCPASFGTSFNLKRHQRIHTGTRPYKCGQCQAAFITKAQL--TTHQRTHTGEKPYKCHICGGRFIQQNNLKRHVMTHTGQKPFKCDRCPAAFISSSDLKRHIRVHTGEKPYKCVHCNKGFTTSGNLSSHYKMHTGEKPYKC 2556
PYKC +C SF S L +H+RIHTG +PYKC +C AF L H+R HTGEKPYKC CG F + +H + HTG K +KC+ C F SS L RH ++H G++PYK K F S +L++ H GEK YKC
Sbjct: 592 PYKCDECGKSFIWSSTLFKHKRIHTGEKPYKCEECGKAFNHSQILLHIRHKRMHTGEKPYKCEECGKSFNLSSTFIKHKVIHTGVKLYKCEECGKVFFWSSALTRHKKIHAGQQPYKWEKIGKAFNQSSHLTTDKITHIGEKSYKC 737 The following BLAST results are available for this feature:
BLAST of TCONS_00020220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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