TCONS_00020213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020213
Unique NameTCONS_00020213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020213 ID=TCONS_00020213|Name=TCONS_00020213|organism=Clytia hemisphaerica|type=transcript|length=1057bp
ACCTTTTAACGTTTTGAGAGTTGTATGTAAAGCCATTTATTattcaatga
agtatttttcAACACTGAATCGACACAGgcgaaagttttcaaattataaa
attgaAAGATGGATTCCATGACACAAAGAGAACGAGACATCTTGGAAGAA
TCATTTGGTCTTTACGATACTTGTGGCGACGCCAAAATTGAAATCAGTCT
TTTGGGAGAAGCTCTTCGTGGTCTTGGTTTGAATCCAACAGAAAGCGATG
TCCAAAAAATTGTCAAAGAGTTAGATTCTGCAGGCTCCAGAAGAATCAGC
TTCGAAGAATTTTTACCGATTTATCAATCACTTGCATCGCGCGGCGGAAA
CGATcgaaacaagaaaaataaaacagacTTTTTGGAATGTTTTCGTGTGT
TCGATCGCGAACAAAATGGTACCATTTCGGCTGGTGAATTACATCATgtt
atgacgtcattgggtGAAGCCATGACGCCTGCTCAAATGGACTTATTATG
TCAAGGATTGGAAGATAAAAATGGAATGATTAATATTGAGCAATTCGTTG
ATCAAGTGATGAATGGTTGAGGTGAAAATAAGGGACAAACTGGGGTTTGA
CATTTTATGGATGTTTAAAAGACTGGTTATAAGACGAGATTACATCGAAA
ACGATTTCCACTCCTTCTTGTCAATagttttgtagaaaaaaaatagaatt
ctTGTTTTTGTTAGCATCATATACCTGGAAACAAAGTATTTATTAGGATA
TTTTAACGGCACTTATTACatagttatttaaaaaaaatatgtatttagCT
CCCTCTGACATGTATTCACTTCACTATTGACGCGTTCAGAGACTGCTTTC
TAGATTTCGAAATTTGGTGGGAACAAATTATTTAGAGGCTCAacccatgg
aggtataaagaaacaggagaagtatgctattgttaccatgctcgccctac
gattaaaaaaattacgagctatgcatgctcataatctcatatatcgtgca
tttttaatgagctcttttgttgataggtgaaatcttattggctaacttaa
gtgttgg
Run BLAST on NCBI

transcript from alignment at sc0000350:161913..163199-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020213 ID=TCONS_00020213|Name=TCONS_00020213|organism=Clytia hemisphaerica|type=transcript|length=1287bp|location=Sequence derived from alignment at sc0000350:161913..163199- (Clytia hemisphaerica)
ACCTTTTAACGTTTTGAGAGTTGTATGTAAAGCCATTTATTATTCAATGA
AGTATTTTTCAACACTGAATCGACACAGGTATAGAGAAACGTAATAACTT
TACAAAACATCTGCCTGTGTTCTGTGTTTTGAAGGTTAAATGTGAACAGT
TCTTATATTTGAAGAAAATATCATCATAGAGATTTATGTATGCTTTTCTC
TTCTGTTATAAAATTCGTTTTATATTTGATGATTTTACTTTCTGTTTTGT
TATCTTTTGATTGCAGGAGAAGATTTGATAACTTTCCTTGCTTTTTATTT
TAAAATAGGCGAAAGTTTTCAAATTATAAAATTGAAAGATGGATTCCATG
ACACAAAGAGAACGAGACATCTTGGAAGAATCATTTGGTCTTTACGATAC
TTGTGGCGACGCCAAAATTGAAATCAGTCTTTTGGGAGAAGCTCTTCGTG
GTCTTGGTTTGAATCCAACAGAAAGCGATGTCCAAAAAATTGTCAAAGAG
TTAGATTCTGCAGGCTCCAGAAGAATCAGCTTCGAAGAATTTTTACCGAT
TTATCAATCACTTGCATCGCGCGGCGGAAACGATCGAAACAAGAAAAATA
AAACAGACTTTTTGGAATGTTTTCGTGTGTTCGATCGCGAACAAAATGGT
ACCATTTCGGCTGGTGAATTACATCATGTTATGACGTCATTGGGTGAAGC
CATGACGCCTGCTCAAATGGACTTATTATGTCAAGGATTGGAAGATAAAA
ATGGAATGATTAATATTGAGCAATTCGTTGATCAAGTGATGAATGGTTGA
GGTGAAAATAAGGGACAAACTGGGGTTTGACATTTTATGGATGTTTAAAA
GACTGGTTATAAGACGAGATTACATCGAAAACGATTTCCACTCCTTCTTG
TCAATAGTTTTGTAGAAAAAAAATAGAATTCTTGTTTTTGTTAGCATCAT
ATACCTGGAAACAAAGTATTTATTAGGATATTTTAACGGCACTTATTACA
TAGTTATTTAAAAAAAATATGTATTTAGCTCCCTCTGACATGTATTCACT
TCACTATTGACGCGTTCAGAGACTGCTTTCTAGATTTCGAAATTTGGTGG
GAACAAATTATTTAGAGGCTCAACCCATGGAGGTATAAAGAAACAGGAGA
AGTATGCTATTGTTACCATGCTCGCCCTACGATTAAAAAAATTACGAGCT
ATGCATGCTCATAATCTCATATATCGTGCATTTTTAATGAGCTCTTTTGT
TGATAGGTGAAATCTTATTGGCTAACTTAAGTGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011348XLOC_011348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020213-exon-sc0000350-1575043694:163122..163199TCONS_00020213-exon-sc0000350-1575043694:163122..163199Clytia hemisphaericaexon
TCONS_00020213-exon-sc0000350-1575043694:161913..162891TCONS_00020213-exon-sc0000350-1575043694:161913..162891Clytia hemisphaericaexon
TCONS_00020213-exon-sc0000350-1510915933:163122..163199TCONS_00020213-exon-sc0000350-1510915933:163122..163199Clytia hemisphaericaexon
TCONS_00020213-exon-sc0000350-1510915933:161913..162891TCONS_00020213-exon-sc0000350-1510915933:161913..162891Clytia hemisphaericaexon
TCONS_00020213-exon-sc0000350-1491911889:163122..163199TCONS_00020213-exon-sc0000350-1491911889:163122..163199Clytia hemisphaericaexon
TCONS_00020213-exon-sc0000350-1491911889:161913..162891TCONS_00020213-exon-sc0000350-1491911889:161913..162891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:161913..163199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
228.185	250.663	148.573	119.144	19.5301	12.4755	25.3676	24.0053	37.4322	24.6034	28.4205	28.7723	49.2119	39.3179	28.39	31.7295	94.5982	95.1879	44.4304	64.6998	117.447	114.264	98.3244	101.475	75.9077	78.244	58.4334	35.5437	20.9086	24.0124
Blast
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BLAST of TCONS_00020213 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.600e-32
Identity = 59/150 (39.33%), Postives = 98/150 (65.33%), Query Frame = 1 
Query:  121 TQRERDILEESFGLYDTCGDAKIEISLLGEALRGLGLNPTESDVQKIV--KELDSAGSRRISFEEFLPIYQSLASRGGNDRNKKNKTDFLECFRVFDREQNGTISAGELHHVMTSLGEAMTPAQMDLLCQGLEDKNGMINIEQFVDQVMN 564
            ++ ++D  +E+F L+D  GD+KI +S +G+ LR LG NPT ++V+K++     +   +++I FE+FLP+ Q+++    N++++    DF+E  RVFD+E NGT+   EL HV+ +LGE M   +++ L  G ED NG IN E FV  +M+
Sbjct:   48 SKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAIS----NNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
BLAST of TCONS_00020213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL11.600e-3239.33Myosin light chain 1/3, skeletal muscle isoform OS... [more]
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