TCONS_00020210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020210
Unique NameTCONS_00020210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020210 ID=TCONS_00020210|Name=TCONS_00020210|organism=Clytia hemisphaerica|type=transcript|length=932bp
TAGCAATGCTCCAGCAAATGCAAATGTCTCCAGACAAGAACATTCGTTCG
TTGGAGCAACAGATCCTTCAATTACAATCACAACTTCAACAGCAACTCAA
CATGAGAAGCATCCAACAACCACTAATGCAACAACCAAATCTAGCAATGC
CCATGCCTAACCTCCCTTCACCCATGGTCCCTGGTGCTGATCAACAAGTG
TACGGAGGAGGTGATCCTTCGCTTTACAACATGGCACAAGCTGGTATGCT
GCCCAATAACGGTGCTGATTTACTCAACCCTCAAATCAACCCAATGATCT
TGAACCAAATCTTGGCGGCCGCCCAAGCCCAACAAAGTACTGCCCCTCAA
CAAACGGGCGGGCTTTATGTTGCTCCGCCACAGAATTTGCAACAGTCACC
AATCCAAGGCCAGCAAGGAATGAACGAAGCTGAATCGAGGCGCTCGAGAC
CAGCCGCCATTCCCATTAAACCGCCACCAGGACTGTAAGCTGAAGTAACG
GAGAAAGGAGAATGAAATTTATCTtgcgaatcaaaacaaaacaaaacctt
gGACTATCAATTGGACCAAATACATACATTATCTACAAATTGAATTGTGT
TTAAAGAGACTTCGTATTGACCGGCTCTGGTCTCGTATATTATTCAACAT
TCACTCAcacaaagaattttaaaaatcgaaaaaaaaacatcaacgGAGAA
ATTCTGAAGACACAACGTTTGTCATAGTTTACAAGTAGCATAAAAGTGAA
TAAATCTTACACCATCTTTAACGAACTGATAATTGCATAGAACGCAATAA
AATGTACCCAGTCGTATTCTCTATAAGCAGTTCTCTTTTGGGAAACTGTA
GAAATTCGGCGATGGGTTACACTACGTCGCTAATTGTTTTTGAAGCAATT
CTATTGTCTGTCATTAACGAATCTCAGACTAT
Run BLAST on NCBI

protein sequence of TCONS_00020210-protein

>TCONS_00020210-protein ID=TCONS_00020210-protein|Name=TCONS_00020210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
AMLQQMQMSPDKNIRSLEQQILQLQSQLQQQLNMRSIQQPLMQQPNLAMP
MPNLPSPMVPGADQQVYGGGDPSLYNMAQAGMLPNNGADLLNPQINPMIL
NQILAAAQAQQSTAPQQTGGLYVAPPQNLQQSPIQGQQGMNEAESRRSRP
AAIPIKPPPGL
Run BLAST on NCBI

transcript from alignment at sc0000350:82090..83773-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020210 ID=TCONS_00020210|Name=TCONS_00020210|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0000350:82090..83773- (Clytia hemisphaerica)
TAGCAATGCTCCAGCAAATGCAAATGTCTCCAGGTTTGTCTCATTATTCT
TAAGAACATCTCATTGAAAATGTGAATTGAAATCTCAATTATTTTCCCTT
TACCCTTCTTTCTTCTGGTGAAAACTGGCAGAGCGGAAAGTCAGTTTTTG
CTGTATGATAAAGCTATATATAGCAAGATATGACAATTTCACAACTTTGA
TACTTCCCTTTTAACTTGTAGACAAGAACATTCGTTCGTTGGAGCAACAG
ATCCTTCAATTACAATCACAACTTCAACAGCAACTCAACATGAGAAGCAT
CCAACAACCACTAATGCAACAACCAAATCTAGCAATGCCCATGCCTAACC
TCCCTTCACCCATGGTCCCTGGTGCTGATCAACAAGGTTTGTTTAAACAC
TCTCCTCTCCTCTCATGATAATGAGATTCTTTTCAGATTCAGGTGTTTCC
GTCATTCTTTAGATAACGCTCAGCTAAAGTGTCTAAATCCATTTTTCTTT
CGAGTAAAATAAAAAAATTAACCTCTTCTAAGAAATCTTTTTATGGCTGT
ACTGGTGTTTTTTGCTATATCCCGTATGAAATGCTGATTTTATAATTATT
CTTATCATGCTTGATTTCGATTTCATTATCATGTGTCTCGCAGAAGTATT
TTGATAAACTTTACTAGTGTTTACAATTCATTATTTCTCTTTGCGTAGTG
TACGGAGGAGGTGATCCTTCGCTTTACAACATGGCACAAGCTGGTATGCT
GCCCAATAACGGTGCTGATTTACTCAACCCTCAAATCAACCCAATGATCT
TGAACCAAATCTTGGCGGCCGCCCAAGCCCAACAAAGTACTGCCCCTCAA
CAAACGGGCGGGCTTTATGTTGCTCCGCCACAGAATTTGCAACAGTCACC
AATCCAAGGCCAGCAAGGAATGAACGAAGCTGAATCGAGGCGCTCGAGAC
CAGCCGCCATTCCCATTAAACCGCCACCAGGCTAGTTAATTTTTGATTGC
ATAGACAACTCTTAATTGGTCTGCTGGCACTCTGATTCAAATTCACTCAA
AGGAAGCCCTAACAGACTTAGCATCTGCTTGAAAACAGAATCTATTTTAC
ATTGCAGCCACTACAGTATTATTTCCTTGAGAATGATTTATTCCTTCATT
TTTTGGACCTCTTTTTGGTCGCCCGATGATCCTTCTTATGATTTTATGAA
TGTTAATTTTATTTTCTGCTTTTCTTGTACAGGACTGTAAGCTGAAGTAA
CGGAGAAAGGAGAATGAAATTTATCTTGCGAATCAAAACAAAACAAAACC
TTGGACTATCAATTGGACCAAATACATACATTATCTACAAATTGAATTGT
GTTTAAAGAGACTTCGTATTGACCGGCTCTGGTCTCGTATATTATTCAAC
ATTCACTCACACAAAGAATTTTAAAAATCGAAAAAAAAACATCAACGGAG
AAATTCTGAAGACACAACGTTTGTCATAGTTTACAAGTAGCATAAAAGTG
AATAAATCTTACACCATCTTTAACGAACTGATAATTGCATAGAACGCAAT
AAAATGTACCCAGTCGTATTCTCTATAAGCAGTTCTCTTTTGGGAAACTG
TAGAAATTCGGCGATGGGTTACACTACGTCGCTAATTGTTTTTGAAGCAA
TTCTATTGTCTGTCATTAACGAATCTCAGACTAT

Coding sequence (CDS) from alignment at sc0000350:82090..83773-

>TCONS_00020210 ID=TCONS_00020210|Name=TCONS_00020210|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000350:82090..83773- (Clytia hemisphaerica)
GACTGTAATGTACGGAGGAGGTGATCCTTCGCTTTACAACATGGCACAAG
CTGGTATGCTGCCCAATAACGGTGCTGATTTACTCAACCCTCAAATCAAC
CCAATGATCTTGAACCAAATCTTGGCGGCCGCCCAAGCCCAACAAAGTAC
TGCCCCTCAACAAACGGGCGGGCTTTATGTTGCTCCGCCACAGAATTTGC
AACAGTCACCAATCCAAGGCCAGCAAGGAATGAACGAAGCTGAATCGAGG
CGCTCGAGACCAGCCGCCATTCCCATTAAACCGCCACCAGACAAGAACAT
TCGTTCGTTGGAGCAACAGATCCTTCAATTACAATCACAACTTCAACAGC
AACTCAACATGAGAAGCATCCAACAACCACTAATGCAACAACCAAATCTA
GCAATGCCCATGCCTAACCTCCCTTCACCCATGGTCCCTGGTGCTGATCA
ACAAGGCAATGCTCCAGCAAATGCAAATGTCTCCAGGACTGTAATGTACG
GAGGAGGTGATCCTTCGCTTTACAACATGGCACAAGCTGGTATGCTGCCC
AATAACGGTGCTGATTTACTCAACCCTCAAATCAACCCAATGATCTTGAA
CCAAATCTTGGCGGCCGCCCAAGCCCAACAAAGTACTGCCCCTCAACAAA
CGGGCGGGCTTTATGTTGCTCCGCCACAGAATTTGCAACAGTCACCAATC
CAAGGCCAGCAAGGAATGAACGAAGCTGAATCGAGGCGCTCGAGACCAGC
CGCCATTCCCATTAAACCGCCACCAGACAAGAACATTCGTTCGTTGGAGC
AACAGATCCTTCAATTACAATCACAACTTCAACAGCAACTCAACATGAGA
AGCATCCAACAACCACTAATGCAACAACCAAATCTAGCAATGCCCATGCC
TAACCTCCCTTCACCCATGGTCCCTGGTGCTGATCAACAAGGCAATGCTC
CAGCAAATGCAAATGTCTCCAGGACTGTAATGTACGGAGGAGGTGATCCT
TCGCTTTACAACATGGCACAAGCTGGTATGCTGCCCAATAACGGTGCTGA
TTTACTCAACCCTCAAATCAACCCAATGATCTTGAACCAAATCTTGGCGG
CCGCCCAAGCCCAACAAAGTACTGCCCCTCAACAAACGGGCGGGCTTTAT
GTTGCTCCGCCACAGAATTTGCAACAGTCACCAATCCAAGGCCAGCAAGG
AATGAACGAAGCTGAATCGAGGCGCTCGAGACCAGCCGCCATTCCCATTA
AACCGCCACCAGACAAGAACATTCGTTCGTTGGAGCAACAGATCCTTCAA
TTACAATCACAACTTCAACAGCAACTCAACATGAGAAGCATCCAACAACC
ACTAATGCAACAACCAAATCTAGCAATGCCCATGCCTAACCTCCCTTCAC
CCATGGTCCCTGGTGCTGATCAACAAGGCAATGCTCCAGCAAATGCAAAT
GTCTCCAGGACTGTAATGTACGGAGGAGGTGATCCTTCGCTTTACAACAT
GGCACAAGCTGGTATGCTGCCCAATAACGGTGCTGATTTACTCAACCCTC
AAATCAACCCAATGATCTTGAACCAAATCTTGGCGGCCGCCCAAGCCCAA
CAAAGTACTGCCCCTCAACAAACGGGCGGGCTTTATGTTGCTCCGCCACA
GAATTTGCAACAGTCACCAATCCAAGGCCAGCAAGGAATGAACGAAGCTG
AATCGAGGCGCTCGAGACCAGCCGCCATTCCCATTAAACCGCCACCAGAC
AAGAACATTCGTTCGTTGGAGCAACAGATCCTTCAATTACAATCACAACT
TCAACAGCAACTCAACATGAGAAGCATCCAACAACCACTAATGCAACAAC
CAAATCTAGCAATGCCCATGCCTAACCTCCCTTCACCCATGGTCCCTGGT
GCTGATCAACAAGGCAATGCTCCAGCAAATGCAAATGTCTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011346XLOC_011346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020210-exon-sc0000350-1575043694:83741..83773TCONS_00020210-exon-sc0000350-1575043694:83741..83773Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1575043694:83388..83552TCONS_00020210-exon-sc0000350-1575043694:83388..83552Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1575043694:82794..83075TCONS_00020210-exon-sc0000350-1575043694:82794..83075Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1575043694:82090..82541TCONS_00020210-exon-sc0000350-1575043694:82090..82541Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1510915933:83741..83773TCONS_00020210-exon-sc0000350-1510915933:83741..83773Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1510915933:83388..83552TCONS_00020210-exon-sc0000350-1510915933:83388..83552Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1510915933:82794..83075TCONS_00020210-exon-sc0000350-1510915933:82794..83075Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1510915933:82090..82541TCONS_00020210-exon-sc0000350-1510915933:82090..82541Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1491911889:83741..83773TCONS_00020210-exon-sc0000350-1491911889:83741..83773Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1491911889:83388..83552TCONS_00020210-exon-sc0000350-1491911889:83388..83552Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1491911889:82794..83075TCONS_00020210-exon-sc0000350-1491911889:82794..83075Clytia hemisphaericaexon
TCONS_00020210-exon-sc0000350-1491911889:82090..82541TCONS_00020210-exon-sc0000350-1491911889:82090..82541Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020210-proteinTCONS_00020210-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:82090..83773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2118	15.6952	8.27841	4.78338	126.326	93.1834	90.5936	95.3847	58.5523	54.8558	50.2615	50.9815	57.405	51.3461	54.3063	56.4849	77.3941	81.2898	57.9006	55.4579	55.6516	53.179	32.4074	36.215	60.2184	68.6957	58.4033	39.8536	28.9749	25.581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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