TCONS_00020188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020188
Unique NameTCONS_00020188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020188 ID=TCONS_00020188|Name=TCONS_00020188|organism=Clytia hemisphaerica|type=transcript|length=1434bp
GAAAttattctttcttctttctaaatAAGATTAACACAAGATGAAGAAGA
CCCAGGACAAAGGAAGCAGAAATGGAGAACCAATTTCAGCATTATCATCT
CTTACGTCAATTCATCTATATTGGTGGATCATCTCGTCAAAGAAATCCCT
GAATACATTTTAaaggataaaatgaaaattttaagGTTGAGGGAATACAC
GCCACCTGTTAAAACTCAAAGCATCCCAGTCAACCCATCCAACGGATTAC
AAGGACcatcatcaaacaacaaacaAAGGTTATCCTTTACACCAAGCAGT
GCATTTGGGAATTATGCTGGTCGAAGGCAGAGCTCGTCATCACCAAACGA
CGGTATCAAATCATCTGTACCGCCCTCAGTCGCTGACATAGGGCGTAAAT
CACCTTTTCGAACATATGCACCACCCTCACCGGGGTCTTCTCCAATCCCC
TCGAGGAACCACACGCCCTCGTCTCATCTCTCTTCGTCGtcaaaagaaaa
caacaacaaagacTCGTACAAACGATACAAACAAGACGAGCTCTTTAAAA
AGAATGCATCCAAAGAGCTTGATGAAACTGGCAGTATCTTGGTCACAAAC
GCGGTTGTAGATCTTACAATCGCAGTTTTCAGATTAATCAATCTAACCAA
AGATATCTGTCAATATACTTACCCTTTGAAAGAGATATCAAGTGCATTGA
GTGAGGcagaaattcaacaacaaaGTGATTTCGATAACCTACGTAGACGG
AGCTGTGATCATATTTTTGATAATATCAATACGCTGTTTCAAAGTTATTC
AACTATATTACTGGCTTTGGATCTTTGCGGGTCAGATATTTATCAAGATT
AtctggaacaaaaacagaacaaTGTACCATTGTCCGATCCTTGCCATAAG
ATGATCCATAAAtcagaaaacatgaaaaagccATCAATCAAAGGATGCAG
ACATGCTCTGGGTTACAATCTGGAAAAACCTGGCTTAGAAGTGAAGAAAG
ATTGCGTGTACATCACTTTGCTGTTGGAGAAATCGTATGGATATTTCGAA
GTTGTTACTAAAGAGATGCTTTACCGGATTAACGATGTTTATTCACTGAT
TGAATTGCTGCCCTTCCTACAAGATAAAACCTTCCAAATGATGGACGTTG
ATCCTACTAAATACCTCAAACCTGGAAAAAACAAAAGACTTGATGGAAAA
GTAAAAAGCGCCAGCTTCAATGAACAAGATGTCATCGTGAATCCAGAAAT
ATTTATCAGTAAGGAGGGAGAAAATGGAAAACTcgattcaaaaaaaaatg
aattcgaTTTGGAAAGTCCATCTGAAGAAGGCCATAAATCAGATATTGTT
TACGACGAAATCGAAAATGACACAACCACTGCAGAAAATGGCGAACCCAA
AGCAGATATTGTCAACGGCGAAATAAAAAATGAC
Run BLAST on NCBI

transcript from alignment at sc0000350:430799..437417+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020188 ID=TCONS_00020188|Name=TCONS_00020188|organism=Clytia hemisphaerica|type=transcript|length=6619bp|location=Sequence derived from alignment at sc0000350:430799..437417+ (Clytia hemisphaerica)
GAAAttattctttcttctttctaaatAAGATTAACACAAGATGAAGAAGA
CCCAGGACAAAGGTAAGTTGGCATACCAATTATTTGATATAccgcatttc
aagttttattttatgGTCTAGTGCTCTTTAGCTTGAGAGGGCGGTGGCGC
TAATTAGAGGGGTGCgctctttttaattttaagtatggaattttgttatt
ttcagcattttcaactttcacgctgcgcgcaacattttttcagaaaatag
acatgttGGCTTATTTTAACTAGAAATCTTTAGATAAAAAGTAAggtatc
cctgaaaagctaaCAAAATTCTACAACTTTTAGACCGAGTGccaatccaa
ataaaatattcCAACCAAAATGGTAGCTTCACGGGGGAAGTTAATTATGA
AATCTCTCTTTGGCTATTTATCAATCTATAACTATACATCATTTTGGAGT
AATATACCGAAAATCAGCATCCAGAAAAATCTGCCAAAAAAGCCGCCCAA
TTATCGGTCACTTTTGtcaaaaatcacgattttcggCTTAAAGAATCCGA
TATTATGTGTGACATCGCAAGCTCGTAATATAGCTAACCATATCAATCTT
TTTATGGGTGAACTCATCTGAAAAGCTCATAAATCTTGATTTTTAACTTC
CGATCATCCTTCGTCATAAAAGGAATAAGAGTTGAATCAACGATGCAGAA
AATATCAAACATGTGATACTTCAGAAAAGTattaaattgaccaaattttg
agaaattttcaacCCCAACGCTGTCCAAAATCTAGTTTGATTCAGTGCGA
TATTGATTAATTAAGCCAATTATAGTTTGGCTTTTTGAAACTCTTAAGTG
AAAAAAGCCCCAGGGGGGAGGTTAGAATCTGCCACCCTCAATTATGGCTA
TGGCCATAAaaattggtacagatgttctccatcattctcaaaaaaaaatg
ttctaaatcatgacaaaaatttccaggatgaaaaaaaatttaatgccGGT
TTTGTATTTTCCATAAAGATGTTAAAGCccatgctgaagatgagtaaaat
attcaaaatttgatgacgtcaaattttttaaatttgtattgtcaatacct
atcacgtgtcaaaatttgaatgtgATTGGATAGATAATTCAGGAGTAATC
AGCactttgaaatttaaagtccatTGGAACCAAAATTTTCGTTTCCAAAG
ATGCCCGAAGGGTTAAGATGTTCGTTAATTACCGTTGGTATAccctaagg
tcccgaatagtagggggACTCCGAACAAAAGGGAGggggctatttagagc
aattcGGCTTATGACTTatgataactgaaaatattctcaaCAATAAATAA
ACGGGGTTCCTAATGAGAACGGGTGGGtccgaaaaattcaaattataacC
GGGAAACGTTGATTCGGAACCTTAGTACTTTTTGGAAGTTGGAGGCTAAT
TTTGATAAGATTTTTTCGTCGGTTTAAAACCCTCCAAAAAGTCTCCCAAA
TTTCTTTTCACTCCTCAGTCAATAATGAAAAAATTCTCttgcttaaaaaa
cttttttcttcaacaaTAGATGCAAGCGAAACCCTTACTcccgggtacct
aataagcggggggtttggaataagcggggtgggTGGACAATTTCTCAAAg
cttaataaacgggggagggggttggaataaaaatgtcctgggtagaaaaa
ttttggaagattaattagcgggggatggctattaggtacccgagagtagc
cctaaacaaaacaaaattgccCTGGTGCTAGGAACGCTGAAAGAGTATAT
CTTCGTGctttttaccaaaaataaaCTTATTGGAAAATCTTTTATATATT
TTAGGAAGCAGAAATGGAGAACCAATTTCAGCATTATCATCTCTTACGTC
AATTCATCTATATTGGTGGATCATCTCGTCAAAGAAATCCCTGAATACAT
TTTAaaggataaaatgaaaattttaaggtaAAAAAATCATCCAGCAGTAT
CAGACAATTTCAAAAGCTTTAATAGGCTATAATTTACCGGGGGTTGAATT
TCGCCAGGCTCAAATTTCTCGGATTTCGCGCTAtttccaatggaaatttg
gaaaggaccatccgcgaaatatttataaacaaaactcaaaaaatgtcaaa
taaactGCTTTTTAAACGTTTACTGGTATCAATGAAGGGgcctggaattc
ccgagttatatATTTTTCTGAGTTATTTTGCCGAGTTATTTTGCATGTGA
CGTCATTATTtcagttttgtgacgtcattatgacgtcatcacaaaattga
TAACTCGAGagttttttttgaactttttctgGTTATTAaatatttgatgt
tttttaactCGCTCTTTTTTGGTGTCTTTAACTTTATGAgttgtttgata
aattttaactcgtttttttttcaaaaaaataactccaaaaaaaaataact
cggaaaaaaataactcggaaaaaaaataactcgggaattccaggcCCAAT
CAAAGAAGCGCTATTAATGCGTCTTTCAACAACCAACAGGCAGTAAAAGA
tgcaaaatcgtgaaaatattgccccccccccaaatctATCCCATTAAAGC
ATATGAAAATACTCCTGCATCATCTAAATACTCCTCTAACATCGAACATG
ATTCCTCGTTGATTCGAAATCCAtagagatgatttttttggttatattat
gttttttttttactttaaggTAACAAATGGATATCTTTTTCATTCTAACC
CAGGACTTTGGAAAATACCTTTTCTAAACACTTCTATTAGCATTTTGTCG
GTCGAAAATGAATCGTTGATAACCAGGACAATCACTCTCTGATAACGACC
TTCTGTtcatctaaaaatttgaaagtgtTTTAGCCATTATGGGAGCACAA
TCAGCCCTGTTTACCGATGATTCATATCCATAATGAAATTGATTGAATTT
GGGCTAAATATAGGGGAAAAAGAATTGTCGGAGCACCTtcatgtacacgc
ttttttttaacgACACAACGATTTATTATCTTTACTTCTAACTTTGGACT
CGACTTTTTCAACTATCAGGTTGAGGGAATACACGCCACCTGTTAAAACT
CAAAGCATCCCAGTCAACCCATCCAACGGATTACAAGGACcatcatcaaa
caacaaacaAAGGTTATCCTTTACACCAAGCAGTGCATTTGGGAATTATG
CTGGTCGAAGGCAGAGTAAGCAgaatattttaaacaatctGCGTCGTGGA
TCAAGAGCGAATATTCTCGGTGAAATCGGAGATCAAGACGAAGGATCGGG
ATCGGGGTCGGATAACTCATCTGACCTTTCTCAAAGTGGTTAGCACCAAA
AACACGTACATTTTGCACGGCTTCGCATGTGCACCCGCACGCACTTTTTA
AACTGTTTTGAACTAAATGCACATACACCACTCACTGTTCTGTTTTTAAC
ATACTTTCAGGTGTCTGATAAAAAAGGCTCTGGTGCAAGTAAATTATACG
GTCTTTTGGAATGTCATCTGGATGAATCTTACCTTTAAATTTTGATCTAT
AGAGCCTTGAGCCTTGCCATCCTTTTGACAGGCGCCTGAGAGTATTACTA
AATCTGCATGCAGATCCTCCTTGAGACAAAAAAGCACGTTTTTTTCGGAC
GATTTGGTTCGCATGAAAATTAGAAAGCACTTTAAAGTGTTTTattcaag
ttcattttttaCCACTCAACAGCACTCGATCTTTCAATACAAGCTTCTCA
CAtgctaaaattgttttttttttaagtaatgcaatagttttcaaaagggg
aatTTTGAATTGTCACATCATTATCTGCATGTCTATCTTGCATATCATAT
GTGTCTTTCTACTTTTTATCAAGGCTCGTCATCACCAAACGACGGTATCA
AATCATCTGTACCGCCCTCAGTCGCTGACATAGGGCGTAAATCACCTTTT
CGAACATATGCACCACCCTCACCGGGGTCTTCTCCAATCCCCTCGAGGAA
CCACACGCCCTCGTCTCATCTCTCTTCGTCGtcaaaagaaaacaacaaca
aagacTCGTACAAACGATACAAACAAGACGAGCTCTTTAAAAAGAATGCA
TCCAAAGAGCTTGATGAAACTGGCAGTATCTTGGTCACAAACGCGGTTGT
AGATCTTACAATCGCAGTTTTCAGATTAATCAATCTAACCAAAGATATCT
GTCAATATACTTACCCTTTGAAAGAGATATCAAGTGCATTGAGTGAGGca
gaaattcaacaacaaaGTGATTTCGATAACCTACGTAGACGGAGCTGTGA
TCATATTTTTGATGTAAGATTTCAAAATTCACCTTTCAACTCTTTGTGGT
GCCATCAGCTTTTAATGGCGTGATAAGGCGGTGCCATCAGCTTTTAATGG
CGTGATAAGGCGTTGAATAGAGAGTTACTGTTTCGATGATGTAATCCaaa
atgaataaacaaaaatgcTTCTAGTAAACAAACTCCTTACAGTACCCTGC
GCCGTTCTTAAGGGAtaacgttttttttcttcaatttaacGGGCGGTGAA
AAAGGGGGCTAAGCTctggtttagacggcccactttttgccctgcctatt
ctaattgtgagtTAAAGTGAGCATaaagttggctgtctaaagtcgatgca
ttgccctcttttgacgtcaatgcaatgacttctttcaatcttttccaagc
aaagattttagcTGCTAACTCTTTTCCCAacttctgcctactctaacaat
tagaataggcagggcagaaagtcggccgtctaaactagagctaataAGTA
ATAAGTAAAATAATTTGACTTTTTTATCCTGACGACGAAACACGAAACGC
GAGATATCAAAAGACTACGTCAGCATGtgaattgatgaaaaaccttctaa
tctttaaagatttttaatcaattcatttgttaaatttttaGAATATCAAT
ACGCTGTTTCAAAGTTATTCAACTATATTACTGGCTTTGGATCTTTGCGG
GTCAGATATTTATCAAGATTAtctggaacaaaaacagaacaaTGTACCAT
TGTCCGTAAgtcatttcaaaagttttattacTTTAATTTTAAGTGACGAA
GCTAAATCAATTTCTACCAGAGTATTTTCTTTTTAGGGAGATAATATTCA
Ataatgccccccccccagcgtttttcgtgaatgcgtgaatgagctttttt
ggttgcatgaatgcgtgaatattgaaaaaatgcgagaatgcgtgaattgg
aaaaacTTGCTTGAACGTGAAAAtctactttttgattgcgtgaatgcgtg
aatctgagctatttttgtgtgaatttgtggaaatttccccgattttcaaa
tgtttccccgatttttccagAGTTAAATTCAGCAAGAAACTAATTCAGAT
CTGCGCGTCTCAatgtgttttcttttgttttgcagGATCCTTGCCATAAG
ATGATCCATAAAtcagaaaacatgaaaaagccATCAATCAAAGGATGCAG
ACATGCTCTGGGTTACAATCTGGAAAAACCTGGCTTAGAAGGTGAATATT
CCACTTCAAATTATCTTGATTACATCAAATGATTGGTTTCGAAATTTCAA
GTATATAATCTTTATTCGCAAGACTATTTTTGTCAACTCTGAGGATGACA
TTGTTGACATACAACCATCTGGTTGTTCCATATTATCGACTTGCTTGTTC
AAGTTCAAGGTGAAAAGTTCGGTATTCTTGTAAGAGTTCACCCGAATATG
GAATGCTCGAAATTATCATATTATTTTCTCTTTCATTAATCTTTCAGTGA
AGAAAGATTGCGTGTACATCACTTTGCTGTTGGAGAAATCGTATGGATAT
TTCGAAGTTGTTACTAAAGAGGTAACTTTTAATACATTATTTTAGCAATA
AATTCTTTCCATGACTTTTTactTCAGATATCATACTCTTGTCTTTTTAT
TCTCAAATTGAGGTAGAATTCAAAAATCTCTGTCCTTCTgttagtctagc
atgctagacgactaattgATAGAGTAGAAGCATTTTCTCTGCCCTCCCGA
AACCTTGGGGTAGGATGAAATGTAAGCTTATTTATTGGTTTTACAATTTA
GCCTAGTAAGAGTGATGTAAAAGACATCGAAGCCAAATAGGTTAACAAGT
TCGACAATTATTAGACACTAAGATATTCGAGATGATTTTCCAATCATTCG
AAGAACATCGTAACTTgacattttgatcattttttctTGTTCTTTGGTAG
ATGCTTTACCGGATTAACGATGTTTATTCACTGATTGAATTGCTGCCCTT
CCTACAAGATAAAACCTTCCAAATGATGGACGTTGATCCTACTAAATACC
TCAAACCTGGAAAAAACAAAAGACTTGATGGAAAAGTAAAAAGCGCCAGC
TTCAATGAACAAGATGTCATCGTGAATCCAGAAATATTTATCAGTAAGGA
GGGAGAAAATGGAAAACTcgattcaaaaaaaaatgaattcgaTTTGGAAA
GTCCATCTGAAGAAGGCCATAAATCAGATATTGTTTACGACGAAATCGAA
AATGACACAACCACTGCAGAAAATGGCGAACCCAAAGCAGATATTGTCAA
CGGCGAAATAAAAAATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011336XLOC_011336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020188-exon-sc0000350-1491911889:430799..430860TCONS_00020188-exon-sc0000350-1491911889:430799..430860Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:430799..430860TCONS_00020188-exon-sc0000350-1510915933:430799..430860Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:430799..430860TCONS_00020188-exon-sc0000350-1575043694:430799..430860Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:432653..432775TCONS_00020188-exon-sc0000350-1491911889:432653..432775Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:432653..432775TCONS_00020188-exon-sc0000350-1510915933:432653..432775Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:432653..432775TCONS_00020188-exon-sc0000350-1575043694:432653..432775Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:433868..434013TCONS_00020188-exon-sc0000350-1491911889:433868..434013Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:433868..434013TCONS_00020188-exon-sc0000350-1510915933:433868..434013Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:433868..434013TCONS_00020188-exon-sc0000350-1575043694:433868..434013Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:434672..435111TCONS_00020188-exon-sc0000350-1491911889:434672..435111Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:434672..435111TCONS_00020188-exon-sc0000350-1510915933:434672..435111Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:434672..435111TCONS_00020188-exon-sc0000350-1575043694:434672..435111Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:435740..435853TCONS_00020188-exon-sc0000350-1491911889:435740..435853Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:435740..435853TCONS_00020188-exon-sc0000350-1510915933:435740..435853Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:435740..435853TCONS_00020188-exon-sc0000350-1575043694:435740..435853Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:436234..436339TCONS_00020188-exon-sc0000350-1491911889:436234..436339Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:436234..436339TCONS_00020188-exon-sc0000350-1510915933:436234..436339Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:436234..436339TCONS_00020188-exon-sc0000350-1575043694:436234..436339Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:436596..436669TCONS_00020188-exon-sc0000350-1491911889:436596..436669Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:436596..436669TCONS_00020188-exon-sc0000350-1510915933:436596..436669Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:436596..436669TCONS_00020188-exon-sc0000350-1575043694:436596..436669Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1491911889:437049..437417TCONS_00020188-exon-sc0000350-1491911889:437049..437417Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1510915933:437049..437417TCONS_00020188-exon-sc0000350-1510915933:437049..437417Clytia hemisphaericaexon
TCONS_00020188-exon-sc0000350-1575043694:437049..437417TCONS_00020188-exon-sc0000350-1575043694:437049..437417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:430799..437417 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.455002	0.192221	0	1.39724	1.60721	0.850855	1.34107	1.08916	1.45494	4.42898	1.33176	2.00388	2.24905	1.56091	3.44972	1.82552	3.0252	1.42604	1.67466	1.37392	1.53525e-09	0	0.228005	2.5035	2.45688	0.942349	0.292767	0.266792	0.94784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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