TCONS_00020172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020172
Unique NameTCONS_00020172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020172 ID=TCONS_00020172|Name=TCONS_00020172|organism=Clytia hemisphaerica|type=transcript|length=217bp
tttcaaagaaaagcGAAATTTCCAGccacaaacttttttttgaggCGCCA
GACGTCGCCAGACAGCACATCATCAGACATTTTGTCTAGACATACAAGGC
GCCATCAAAGAGAGCAATCTGCTTGATACACAGGAATCcctttaaattca
aaatcacCTTTCCACTGATCTACATTTCTAATGACCAACCAATCATTCTC
ATTATATGTGATAATAA
Run BLAST on NCBI

transcript from alignment at sc0000350:326323..335223+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020172 ID=TCONS_00020172|Name=TCONS_00020172|organism=Clytia hemisphaerica|type=transcript|length=8901bp|location=Sequence derived from alignment at sc0000350:326323..335223+ (Clytia hemisphaerica)
tttcaaagaaaagcGAAATTTCCAGccacaaacttttttttgaggCGCCA
GACGTCGCCAGACAGCACATCATCAGACATTTTGTCTAGACATACAAGGC
GCCATCAAAGAGAGCAATCTGCTTGATACACAGGTACAGTTAAATTTATT
TCTTTACAACTTTTCTTGAAAACTATATAACGAATGCAGCTCATGGCGGC
CCCTACTTCTACCTCTTGTGTACCTCTTTTTGGCTTTTGCTTGAACAGCT
CATCCAACTCGTTTGTTGAGTccaatcagttacatcaatatgccttctta
cctgtctttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaa
aaaagacataagtgtgagaacagagtaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaagtttgtctcggcctt
tttataatgagcgagacatacgttctctgattacgcaattttcatattga
cattttcgaggcattttgatgtaactgccaatGCTTTGATgtttccttaa
ggatgttggaGTCAGCTTGGCTAAGGTTAAAATAGTGGGCAAGTAGAGGT
TCATCCGGAACAGTTGTGAGGAAGGTGTCTAAgtgttttttgaatacttc
tttTTGGGGTAGTTTGTCAAATCTCTTATCGGccagtatggatttcgtgt
aactaacgccaaagatcttcggcgtacaactgaaacgttttttGGCGCAT
TAGCGTAAGggtaccgtagagtcgtctaatctcgacatacgtcttgcaat
ctcgacatagctttaggctggtcttcgaaataaaaaatcaaacataaaca
aatacataccaaagttatcaattaatcactaaaatgtactctctctttat
cacgtcacagattgttaatataatatgagaaatgtgaagtgttattactt
atatttgaaaagaaaactttataacgatgtagtaatcgctaaaaactaat
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTGGGAAAGACTTCCCctccagatatttttgtgtttgatattgaca
gcttttagaTTGCAAATTCTCCCCAATCTCTGTTTTATATGGCAGGAAAT
GCCTCCTTTACTTTCGTCATAATCAAAATTCGGGACGTTGCCTTCAATGA
CGATCCAGGTATAAATTATTTGATACCGCTCTCTCCGTCTTTCAAGGCTA
TACAGTTTTAATGATTGAGTTTTTCCCAATAATTTAGATGTCTGAGGGAT
GGAATTCCATGTAAAAAAGATTTCTGAGCTTCTTCCAGTTGCTGGACAAG
GCCACGCTTCCAGGGAGACCAGAGTTGTTGAGAACAGTAGTCCAAATGAG
GGATAGCTAGTGCTTTCCATAAAGTTAACATGGTTTCAATTTTCCTTGAT
TTGAATGTGCGGTATATCCATATGCACTTACCGTCAACTGTCCCATCTTG
GGACGAGTGTatgcaacatgggacttgttaatatctggcctgtattttca
cttactgctagttaaatctctttgacaacaaaattgttttgataactcca
ccaagtttatcaatcgaatactttctgtcataacatgtcacgataacttt
cacttaTAGtacgccctttttaacttttgttttcatttaaaatgaccgaA
TGGAGAATTGGAGAACGCCGGCTGCCTAACTGCCTACCGCCCGATGAGAt
tagtgtgtaacttgccgcacgagtgacgtcaaacgctcacaTTCGCGCGT
GTTCCacttctgatttttttcatatttcaatttaaaagcctactcagtgc
gaaagagaaatcgtgtattttctAATACGCGGCTcatttaactcaaatca
aatgactttggaggttcggtgaaatggtggtggaatggccgtcccatgtt
gcgtaagatagtcccaagttggagcagttgacggtatattttttactttt
ttcatttgTTCTTGGATATGTTTCTCATAAGTCAACTGAGTGTCTAGAGT
GACTCCAAGGTCTTTATCTTCGTCTttattttcgatcaacattGCTGTGT
CAGAAAAATAGCGTGAACTTTGCTTCAGAGCGTTGTTTTTCCCGTAGGCA
AGGTGCTCAAATTTAAGACCATTCAGCTGCATGTTGTCAGCCCTCGAAAT
TCAAGTAAAAGTAAGTCTGCACGTAAGTGCCGTCCAAATCCGGCCAAAGG
CCGGCAAATTTTTGCCGACCTAAGCTTGTTTTTAGGTCGGCAATGCCGAT
CTGAGCTatattttaggtcggcaaagttgTTTAAAGGCTACGGCANGTAC
TGATAAACATCCTCCAGTTTGGAtatttctttcataaaatgggTGTCGTC
AGCAAACAATGCCAAAAAAGAATGAAGGATGTTGTTATCAATATCTTGAA
TCATGATCAGGAACAATAGCAGTCCCAGCACAGATCCTTGCGGCACACCT
GAAATAACATCTGTTTCTGAGGACAAGATTGAGTTTACTGAAACTCTCTG
TGTTCGATGAGTCAAAAAGGATCTGATCCATTCAAGGAGCTTATCCTTTA
TGCCATTTTTCTGAAGCTTGTGTAACAAAATGGTATGGTCTACTCTATTA
AAAGCTTTACTGAAGTCTAAATATATAACGTCAATGTTGTTTCCATTCTC
TAGGTAATGGATCAGTCTTTTGGTGTGTTGAAGCAATTAACTAAGACAGG
AGCGGTCTTTCCTAAAGCCATGTTGATTATTGTTATACAGATTGTTTGCT
TCTAGATGATTCTGTATTTTGGCTCGTACAATCTTTTTAAAGACCTTTAA
AACGTGGGATGTGAGGGCAACGGATCTATAGTTTTCAGCAAGTCCTTGAT
TCCCTTTCTTGTAAACTAGGGATATATGTccagtttttaaaagtttggaG
TGATTCCTTTGTTAAGTATGTTTCTTCAGATGATTGAAAGTGGTAGAGCA
ATGTTATCTTTAGTTTTTAGCAGAAGAAtggtttagatttcgagaaGCGA
TTAGTGTACAAGTAAAAGAATTTTGGGTTGGATTTGATTTTAGAGGTTGC
TTGAGCTTCTTTCTGTTCCCTCTCTTGAGCAAAGGaagtagtcagttcaa
ggtgctggcGGGATGCTCATTAGTAAGTGTCTATAGTTgtgagaataggc
ctctaaattTAGAGCCTTTAaagcctcctgtaactcaaccaaatagaaaa
gaaaaagaaatttcatgccaaaaTAGCCGTTGATAAaaggttagccaatc
agatttgcgcactttcaatcaaaacaatgatatcacgtgatttcaacaat
tgtttaacaaCCAATAGAAATCTGCggccagatttggcatctacaaaaat
acccggctactgTAACTCTGttgtttttatattatttttcgttttaacta
aatgtTATACTTCAAAAACACACaaacagagtagacgggtctcccagcta
gggTATTAATGAACTTTTCCAGTGgtcaaattttagattttctctCAGGA
TTTTCAGAGGGCTCTCTCTCCTCATAAAATGACATCAATGTTGTTCTCCA
ACTCggtctttttcacaaaatttcaacttttccaTTCCAGGGGGTTCTAC
CCTGATTTATTCCAGGGGATAAACATGGCATTTAAATTTCCAGGGGTGTT
GGTGAAAAAAGTATGTCAAGTGACAgtgtaaaatttttgatttgattgaa
ttatttttaagtttggaaaaaaagtatATACTGATGTTGTtgggcagttc
cagaaaaaaaccgttgcCCCCTGTGGATGACagggtttttgttttttttt
cacttggaaatcctgagaaatttgaaaaaggtttcggAAAATCCAGGATT
TTTCCTCGTTATTTAGTCATATGTATCGAAAGTCCATGaaatttgctcta
ttttcttgcTAAGTATCAGAAAATCCAAGATTATCAGAAAGTCCAagatt
ttcccataaaaaatcttgaatgttaCAGAAAtactgaagtttttcaaaag
taaattgttacgGAAAATCCTTGTTGTCCACAGGGAGGTAACAGACTGTA
ACTTTAACCGCCCAAGATATTGAAATCCAAAGTTCCAAATTCAGGACATC
TACACTTTGTGGAAGcaatataaaaatgagaaaatttgaatttggaaAAC
TTCTGTTCATACCAGCTagtcatcaaactaaaataatCGAGAGCAGGCTA
GAAGGATACCTGTAGATGAGTTCAATAATTTTGAATAGTAGGATTGATCA
CTAGCCACGTATGGTTGTATGACATTTAGAGATGATCTATACCATAAAAA
GTCTAAAGTAAATTTTTTGATCCTGTCCTCTAATTTTCACCTAATATGGT
TAAGGATAcctgaaagtttgaaatcaaactttgtaattatcatttttgga
cctaccccggtgggctgtaggtcctataaattaacctctgttcgttcgtc
cgttcgtccgttcgttactagcttttctcgggattggctNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTCAAAatatggccgagttcgatt
tttgagaaaaaattttttccggttgaaaatgccggaaatcgccgtctttg
cagattttcattatatgttttccttgaatttctatgttcttcactcaaaa
acattattgataacaatgctcaccatcaagcatgattcaattgtcaataa
aactgatttttgcgaccagaactttctattaattttccctacaacccttc
cctctccccccatcaacaatcaatgatgaatttattgcgttatgcatttt
cgctaaacgatatattttctgactgatttttttctcctcgcattgctatc
taactttcatcatcaggtaggtccattcagcatctagcttgtttaatATG
GCTTCTACAGAGTGTGAATGTCTTGAATTCAGAACTTTGGATGTAAATAT
CTTTGAATAGAATCACTGTTGACAACTTTGACTTGAGTTTTTCTAATGCT
TTCCATGATAGCTATGCATggattaagttttatttttggacctaccccgg
tggaggacctataaattaaccgttgttcATTATGAGCTTTTCTCCAGATT
ggttattcaatttttctgatattttgcacaaggaatcaaacccttgaatg
tgacggagctcgatttttggaaaaaagtttttcggaTAAGTTTCACATAG
GGTCCACCACCCCCCAGaaatttgggggtacctaataAAGAAAAGTTAGT
TAGTTAGTGTTAGTGTTAGAAAAGCCAGGTACCTGgaagtattcttaaat
ttaggggtacctgatatgtttggggtTACCTGCATTTTCACAGACAAGTG
GGGACGGgggctgttgtttttgtatgaagtcATGTTGGCGAGCCATTTTA
ACTTTCAGAAATACTAAATTTTTCCCACTGCGTGGGATACGAACATCAGT
GAATTAGATGAGAAAACATACTTTTGGAACCCCTGAGATTAAAGGGGATA
TTCCACGCTCATTCTTAAGGGGTTTACCCTTGAACCTGTTAAGTGCCACT
GGGATTATATGAGATTGGCAGGTCTGGGTGATTTAGAATGGGTGGttgta
aaattatcaattatcagcCAATCTAAAGCattgaaaatcaaagattttct
ctgTTAGGCCCAACTATAGTTAGGCCCGCCTTTACCACGACTATAAAGAA
AGTATCTGGTGAAGAATGTTATTGAGGTCCTGTTCAAAATCAAGGGGATT
GAAAAGACTGATTTGTCTGAAAGATTTCAaggtttttatgattttattaa
AGAAAACGTCTAAAATACCCCTAGTATTTTAtgcattttaaggttttaag
gGAGTTGAGGATTCAACCTTGAGAGtttaaaattcaacctttctccCACT
GTCGATAGATTTCCTTGAAATCCTTTAAAACTAGCAAAGATCAACTAAAA
ACCCTAGAAACCCTTGAAAGTTTGTGTTAAAAAACCCTTTAAACCCtgga
aaattagtcaaaaatgaCCCTTGAAAACCtttaatttgttgaaaaagatg
TTCATCATGGAAGTATTTTCCCAGGAATTGGAAttttgggggtacctgaa
cCCTGGAGGACCCTATGTTTCAGCAAAAAAGAACAGCTTaataaaaaatt
ggatcattaattttttctgatttcttgcatgaaagtaaggtaccatcata
ggcAAAAGATGGTTTCAAAAAACATATCTTTATCCtgtaagaatcactat
ttataagcataaatcaatgttcttagccaaatcaatcaattttttgatga
gattgatgttttttttttaaagaatatttatgCTTAGACGTGTTGTTATA
GAAAAAGAGGctaaattcgattttttttataagcacattaccaATTACTT
AGTTATTAACTTTTCTCGACATTGGTtcattcattctttatgattttttg
cacaaacgtgcataactataaaccctcgaatgtgactgagcccaattttc
gaaaaaagattttggggcAAAATCCagcaaaaacagcttaaaaagggttt
tttggacttcgtAGAAAactggatcattaatttttccttatttttttgca
tgaaagtagggaaCCATCCTTTGTTAACAATGGCGgaagcagattttcac
aaaaaaaactttcaccCTAGATCGGTGTTCCTAAccaaattactcaaatt
ttaGATGAGATAGATATTCTCTAGACATTCTTCTTCCTTCCCTTAATACC
CCCAATTGGCACAGGGGACAATCAGTGATGAAAGCAAACGacgaatttta
ataaatcgtcactttttgtgttctggttgttttaacgggcacgctcacgt
agatatcaataatatgtgttaaatgcataaccaggtagggccataaaagt
atcacttgtttatgcAGGAATCcctttaaattcaaaatcacCTTTCCACT
GATCTACATTTCTAATGACCAACCAATCATTCTCATTATATGTGATAATA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011332XLOC_011332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020172-exon-sc0000350-1491911889:326323..326455TCONS_00020172-exon-sc0000350-1491911889:326323..326455Clytia hemisphaericaexon
TCONS_00020172-exon-sc0000350-1510915933:326323..326455TCONS_00020172-exon-sc0000350-1510915933:326323..326455Clytia hemisphaericaexon
TCONS_00020172-exon-sc0000350-1575043694:326323..326455TCONS_00020172-exon-sc0000350-1575043694:326323..326455Clytia hemisphaericaexon
TCONS_00020172-exon-sc0000350-1491911889:335140..335223TCONS_00020172-exon-sc0000350-1491911889:335140..335223Clytia hemisphaericaexon
TCONS_00020172-exon-sc0000350-1510915933:335140..335223TCONS_00020172-exon-sc0000350-1510915933:335140..335223Clytia hemisphaericaexon
TCONS_00020172-exon-sc0000350-1575043694:335140..335223TCONS_00020172-exon-sc0000350-1575043694:335140..335223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:326323..335223 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.47975	3.79126	8.80404	7.17782	12.2336	5.5241	6.66459	10.9188	1.09207	4.05812	3.22041	3.45238	0	2.68526	2.20765	5.23592	4.86432	3.98862	0	0	3.75899	0	0	5.40363	1.3914	0	0	0	0.672604	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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