TCONS_00020169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020169
Unique NameTCONS_00020169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020169 ID=TCONS_00020169|Name=TCONS_00020169|organism=Clytia hemisphaerica|type=transcript|length=960bp
TCCACAGACCAGATTTGAGGTGCGGTAAGAATGTTCCCATCCCAGGCTAC
CGGTTATTTTCACAATGTAATGCGGAAGGCCAATCACCATGTTGCAATCT
GAACACTGGATTATGCGGGAAAGGTGCAGAAAACTGTGATTGTGAGAATT
GTACGGACTTCCGGAAGATGATATCAGCGGAACTGGCCCAATGGCAACCA
CGGAAATGTCGGTTGAGAAGATTTCACTGGAAAGATTCATGCTCGTTGAT
AAGTAGACAGAATATCTCACTCGTTTTCTTAGGTGATTCATTGATTCGAC
ATTTACACACAGCCACCTTGCTTCATCTTACAAACGACCACGAAACAGGC
GCTATTCCGCAGAACGCATCTGATAAAGAGCGCCAACGTTGTTCCGGTGT
CCTGCAAATTGTACAAAAAGAATGCAGCTTGGAGGTAGCTGCTCAAAATG
TAGACGAACTTCAATCAGATACCGTCTGTACAGGATTTACTCCAAATAAA
TTCATTGTAGATTTAGTTCAAGATTATCATAGCGTTTTACTACAAAAAGT
TCGAGACAAAATAAACTCGGTGTTAAACCAAGAAAATACGTGGCTAATTT
TAGGGGTCGGTTTACACTACCAACTAGAGATGGACTCGCTAAAGCGAGAA
TATTTAGACAAAGTGTTTGAGATATTGAGTCATTCTGCTAATGGATGGCC
AAAAGTGTTATGGATTGAGCTTCACGCTTTTTCGGGTTACATACGGCAAG
TTGCGGGCCCAACaatgaagaaaattgaagattttaatGAACTTGTAGAA
GAATATTTAGAGAAACGTGGCGCTAAAGTGATAAAGACGTTTGCAATGAC
GAAAAATGTGAAGAGTTACGACGGACGACATCACGGGTTGGGATTGAACC
TTTTCAAAGTTGACTTGATCATGAATTACTTGGATCAATTTTATCGAAAG
AATCGGAAGA
Run BLAST on NCBI

protein sequence of TCONS_00020169-protein

>TCONS_00020169-protein ID=TCONS_00020169-protein|Name=TCONS_00020169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
HRPDLRCGKNVPIPGYRLFSQCNAEGQSPCCNLNTGLCGKGAENCDCENC
TDFRKMISAELAQWQPRKCRLRRFHWKDSCSLISRQNISLVFLGDSLIRH
LHTATLLHLTNDHETGAIPQNASDKERQRCSGVLQIVQKECSLEVAAQNV
DELQSDTVCTGFTPNKFIVDLVQDYHSVLLQKVRDKINSVLNQENTWLIL
GVGLHYQLEMDSLKREYLDKVFEILSHSANGWPKVLWIELHAFSGYIRQV
AGPTMKKIEDFNELVEEYLEKRGAKVIKTFAMTKNVKSYDGRHHGLGLNL
FKVDLIMNYLDQFYRKNRK
Run BLAST on NCBI

transcript from alignment at sc0000350:292982..294599+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020169 ID=TCONS_00020169|Name=TCONS_00020169|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at sc0000350:292982..294599+ (Clytia hemisphaerica)
TCCACAGACCAGATTTGAGGTAGAGCCCCCTTCTCTAATTTGTGCATTTA
GAGCGCGTGTCTGTTAGTTTcgggaaataatgaaaaaaaggaCATCTCGA
AAACTTTGTCAGCTACGTGCAAGAGTACCAATTTTACCAAGTGGGTGCTG
ACTAATAAATGGAATGCAGAATAATACTGTCACTAACATATTCTTGAACC
ACTAGTTTTAAAAAGCATCTGATTAGACACGAACTCTAATTCGTTCAAGG
AGGGTTGgcttttcatcgaataagggaggcTATCAAATAGTAAAGCGgtg
tttatgagagtttcttgttgacggttaatttcaatattatcgaataatag
agcgtatagaatagtagaacgtcaaattagagagcgtcgcCTGTAGTTTC
AGCATGAACTCTCCTGTTTTCATTTAATATCAGGTGCGGTAAGAATGTTC
CCATCCCAGGCTACCGGTTATTTTCACAATGTAATGCGGAAGGCCAATCA
CCATGTTGCAATCTGAACACTGGATTATGCGGGAAAGGTGCAGAAAACTG
TGATTGTGAGAATTGTACGGACTTCCGGAAGATGATATCAGCGGAACTGG
CCCAATGGCAACCACGGAAATGTCGGTTGAGAAGATTTCACTGGAAAGAT
TCATGCTCGTTGATAAGTAGACAGAATATCTCACTCGTTTTCTTAGGTAA
ggacaatttctttttcaaacctaaGGTAACTTGGAAAGTTTAATTATTGg
taaaaaagaagtttcaatATGTATAGTTTCTATGTGTTCTCACTTTGACA
TCTCCTCTACCGCAAAACCCTGATGTGACGATTTTCTAGGAAGCAATCAG
GGCCAAACATTGGTGGCTCTAGAGGTCAATGAACATTTTATACAGATAAG
ATTACTTCATCTCAATcccattttttcactttttcaccaGGTGATTCATT
GATTCGACATTTACACACAGCCACCTTGCTTCATCTTACAAACGACCACG
AAACAGGCGCTATTCCGCAGAACGCATCTGATAAAGAGCGCCAACGTTGT
TCCGGTGTCCTGCAAATTGTACAAAAAGAATGCAGCTTGGAGGTAGCTGC
TCAAAATGTAGACGAACTTCAATCAGATACCGTCTGTACAGGATTTACTC
CAAATAAATTCATTGTAGATTTAGTTCAAGATTATCATAGCGTTTTACTA
CAAAAAGTTCGAGACAAAATAAACTCGGTGTTAAACCAAGAAAATACGTG
GCTAATTTTAGGGGTCGGTTTACACTACCAACTAGAGATGGACTCGCTAA
AGCGAGAATATTTAGACAAAGTGTTTGAGATATTGAGTCATTCTGCTAAT
GGATGGCCAAAAGTGTTATGGATTGAGCTTCACGCTTTTTCGGGTTACAT
ACGGCAAGTTGCGGGCCCAACaatgaagaaaattgaagattttaatGAAC
TTGTAGAAGAATATTTAGAGAAACGTGGCGCTAAAGTGATAAAGACGTTT
GCAATGACGAAAAATGTGAAGAGTTACGACGGACGACATCACGGGTTGGG
ATTGAACCTTTTCAAAGTTGACTTGATCATGAATTACTTGGATCAATTTT
ATCGAAAGAATCGGAAGA

Coding sequence (CDS) from alignment at sc0000350:292982..294599+

>TCONS_00020169 ID=TCONS_00020169|Name=TCONS_00020169|organism=Clytia hemisphaerica|type=CDS|length=2871bp|location=Sequence derived from alignment at sc0000350:292982..294599+ (Clytia hemisphaerica)
CACAGACCAGATTTGAGGTGCGGTAAGAATGTTCCCATCCCAGGCTACCG
GTTATTTTCACAATGTAATGCGGAAGGCCAATCACCATGTTGCAATCTGA
ACACTGGATTATGCGGGAAAGGTGCAGAAAACTGTGATTGTGAGAATTGT
ACGGACTTCCGGAAGATGATATCAGCGGAACTGGCCCAATGGCAACCACG
GAAATGTCGGTTGAGAAGATTTCACTGGAAAGATTCATGCTCGTTGATAA
GTAGACAGAATATCTCACTCGTTTTCTTAGGTGATTCATTGATTCGACAT
TTACACACAGCCACCTTGCTTCATCTTACAAACGACCACGAAACAGGCGC
TATTCCGCAGAACGCATCTGATAAAGAGCGCCAACGTTGTTCCGGTGTCC
TGCAAATTGTACAAAAAGAATGCAGCTTGGAGGTAGCTGCTCAAAATGTA
GACGAACTTCAATCAGATACCGTCTGTACAGGATTTACTCCAAATAAATT
CATTGTAGATTTAGTTCAAGATTATCATAGCGTTTTACTACAAAAAGTTC
GAGACAAAATAAACTCGGTGTTAAACCAAGAAAATACGTGGCTAATTTTA
GGGGTCGGTTTACACTACCAACTAGAGATGGACTCGCTAAAGCGAGAATA
TTTAGACAAAGTGTTTGAGATATTGAGTCATTCTGCTAATGGATGGCCAA
AAGTGTTATGGATTGAGCTTCACGCTTTTTCGGGTTACATACGGCAAGTT
GCGGGCCCAACaatgaagaaaattgaagattttaatGAACTTGTAGAAGA
ATATTTAGAGAAACGTGGCGCTAAAGTGATAAAGACGTTTGCAATGACGA
AAAATGTGAAGAGTTACGACGGACGACATCACGGGTTGGGATTGAACCTT
TTCAAAGTTGACTTGATCATGAATTACTTGGATCAATTTTATCGAAAGAA
TCGGAAGCACAGACCAGATTTGAGGTGCGGTAAGAATGTTCCCATCCCAG
GCTACCGGTTATTTTCACAATGTAATGCGGAAGGCCAATCACCATGTTGC
AATCTGAACACTGGATTATGCGGGAAAGGTGCAGAAAACTGTGATTGTGA
GAATTGTACGGACTTCCGGAAGATGATATCAGCGGAACTGGCCCAATGGC
AACCACGGAAATGTCGGTTGAGAAGATTTCACTGGAAAGATTCATGCTCG
TTGATAAGTAGACAGAATATCTCACTCGTTTTCTTAGGTGATTCATTGAT
TCGACATTTACACACAGCCACCTTGCTTCATCTTACAAACGACCACGAAA
CAGGCGCTATTCCGCAGAACGCATCTGATAAAGAGCGCCAACGTTGTTCC
GGTGTCCTGCAAATTGTACAAAAAGAATGCAGCTTGGAGGTAGCTGCTCA
AAATGTAGACGAACTTCAATCAGATACCGTCTGTACAGGATTTACTCCAA
ATAAATTCATTGTAGATTTAGTTCAAGATTATCATAGCGTTTTACTACAA
AAAGTTCGAGACAAAATAAACTCGGTGTTAAACCAAGAAAATACGTGGCT
AATTTTAGGGGTCGGTTTACACTACCAACTAGAGATGGACTCGCTAAAGC
GAGAATATTTAGACAAAGTGTTTGAGATATTGAGTCATTCTGCTAATGGA
TGGCCAAAAGTGTTATGGATTGAGCTTCACGCTTTTTCGGGTTACATACG
GCAAGTTGCGGGCCCAACaatgaagaaaattgaagattttaatGAACTTG
TAGAAGAATATTTAGAGAAACGTGGCGCTAAAGTGATAAAGACGTTTGCA
ATGACGAAAAATGTGAAGAGTTACGACGGACGACATCACGGGTTGGGATT
GAACCTTTTCAAAGTTGACTTGATCATGAATTACTTGGATCAATTTTATC
GAAAGAATCGGAAGCACAGACCAGATTTGAGGTGCGGTAAGAATGTTCCC
ATCCCAGGCTACCGGTTATTTTCACAATGTAATGCGGAAGGCCAATCACC
ATGTTGCAATCTGAACACTGGATTATGCGGGAAAGGTGCAGAAAACTGTG
ATTGTGAGAATTGTACGGACTTCCGGAAGATGATATCAGCGGAACTGGCC
CAATGGCAACCACGGAAATGTCGGTTGAGAAGATTTCACTGGAAAGATTC
ATGCTCGTTGATAAGTAGACAGAATATCTCACTCGTTTTCTTAGGTGATT
CATTGATTCGACATTTACACACAGCCACCTTGCTTCATCTTACAAACGAC
CACGAAACAGGCGCTATTCCGCAGAACGCATCTGATAAAGAGCGCCAACG
TTGTTCCGGTGTCCTGCAAATTGTACAAAAAGAATGCAGCTTGGAGGTAG
CTGCTCAAAATGTAGACGAACTTCAATCAGATACCGTCTGTACAGGATTT
ACTCCAAATAAATTCATTGTAGATTTAGTTCAAGATTATCATAGCGTTTT
ACTACAAAAAGTTCGAGACAAAATAAACTCGGTGTTAAACCAAGAAAATA
CGTGGCTAATTTTAGGGGTCGGTTTACACTACCAACTAGAGATGGACTCG
CTAAAGCGAGAATATTTAGACAAAGTGTTTGAGATATTGAGTCATTCTGC
TAATGGATGGCCAAAAGTGTTATGGATTGAGCTTCACGCTTTTTCGGGTT
ACATACGGCAAGTTGCGGGCCCAACaatgaagaaaattgaagattttaat
GAACTTGTAGAAGAATATTTAGAGAAACGTGGCGCTAAAGTGATAAAGAC
GTTTGCAATGACGAAAAATGTGAAGAGTTACGACGGACGACATCACGGGT
TGGGATTGAACCTTTTCAAAGTTGACTTGATCATGAATTACTTGGATCAA
TTTTATCGAAAGAATCGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011331XLOC_011331Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020169-proteinTCONS_00020169-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020169-exon-sc0000350-1491911889:292982..293000TCONS_00020169-exon-sc0000350-1491911889:292982..293000Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1510915933:292982..293000TCONS_00020169-exon-sc0000350-1510915933:292982..293000Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1575043694:292982..293000TCONS_00020169-exon-sc0000350-1575043694:292982..293000Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1491911889:293415..293677TCONS_00020169-exon-sc0000350-1491911889:293415..293677Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1510915933:293415..293677TCONS_00020169-exon-sc0000350-1510915933:293415..293677Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1575043694:293415..293677TCONS_00020169-exon-sc0000350-1575043694:293415..293677Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1491911889:293922..294599TCONS_00020169-exon-sc0000350-1491911889:293922..294599Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1510915933:293922..294599TCONS_00020169-exon-sc0000350-1510915933:293922..294599Clytia hemisphaericaexon
TCONS_00020169-exon-sc0000350-1575043694:293922..294599TCONS_00020169-exon-sc0000350-1575043694:293922..294599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:292982..294599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141722	0	0	0	0.414551	0.933372	7.28592	2.80408	6.09132	5.87115	3.76798	3.74515	0.0883921	0.0917961	0	0	0.971934	0.502101	0.834962	1.2202	0.502425	0.388544	0.0220289	0.295464	0.0317913	0.489486	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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