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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020161 ID=TCONS_00020161|Name=TCONS_00020161|organism=Clytia hemisphaerica|type=transcript|length=1549bp
GAGTTTCTGACATGCAATAAATAAAACTCTTTTCCTTTTTAAGAAAAGAA
TAATACAAAAAATACTAAAGTAAAATAATGTCTGGTATTGCAAATTGGAT
ACGTCACCAGCAATATGTTTTAAAGCATGTTGGTGGCTACCAGAATGCAT
TTCGAAGATTGTTACGCGAAGGCAATGTCAGGACAGGAGAATTGATCGGT
GAAGATAAATATggtaataaatattttgaaaacaaaacctatTTCATGGG
TAGAAGTCGATATGTGGAATTTCCTTATGAAGGGAGACTGGAATTTGATG
GATCTCAGGTTCCACCTGAGTGGCACCGGTGGATGCATAACATGACAGAT
GAACCACCAAGTACCCATCCACCAACACCcagaaaatttattattgatca
TAAAAAGAACATGTCAGGTACCAAAGATGAATATGTACCATATTCTACTA
CTCGACCAAAAGTTGAATTCTGGAAACCTGCCAATTAATTTCTTGTccta
actttttaagtttttttgtcaattattttaaaaattatgttttccAATAC
ATGGATGGAATGAGTATGTATATTggtattgttattattttgtgcaaaat
tttgatgaaagctATTTACCATTGATGTAGAATTTTCTTCCAGCGTTTAA
ACCTCATTTTTAAATGGTCATTATTCAAAAGCTCTTATAAATCGGTGAAA
AGGGCTTGGTAAGGTTTCAACTTTTCGACTTTTTGACCTGTGTTATTTTA
AAAGTCCTTTTCACTTTTGATAGAGTTTGTTTTAGAATGTGatttttgtg
ctcgttgaaaagataatcatgAGTGAGGTATTATCgtacaaatttgaaaa
tgaggatgaaaaattaagaagaacGAATCAACTTGTTAAATTCTTCAATT
CGTTTGTTTAAAAGCAATTTATATAACCAAATTCGCTCGAAATTTAATAT
TTCTATAGCTCACTACGTACGTTTGCTTGTTTTTGGGTTTGTGTGaatca
attctttattttcagtataaaataaaaatatttgttggaATATAACAGTG
ATAGAGTTATGGAGAAGAACTGGCTGACCTTCCTTACAAAACCATGGTTT
ATACAACTCATTTTGTGAAGAAGGtatacttttttaaattatcTCTTTCA
GTCTGTTTCAGATAATATCTCTAAATGGGGATAGGGAATGGAAAAAGACG
AGCATTAATTCTTAGATTGTTCTTAACACAAAGGAAAATCTTGGAGGCAT
TCTTTATCGCTACTAAAGGACCTAGTTTGAATAACCAAATAGACACTCGT
AGCCTTATGCTTTTGTCAGAAATGGAGTCACGTGAGACTTAATGATATTT
ATAGCTTTTAATAATTCCCTatactgtaatatattttattGCCACTTAAA
ATTTTTATTGCTTTTAATTACTCACATTTTTTCcaattttttcaataaat
ttgttactttctttttacttgtatgataactgatgatggcgtaagccgaa
aagctttttatccaattttcaaatatattttatactTCATACAAGCAAG Run BLAST on NCBI transcript from alignment at sc0000350:182057..183605+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020161 ID=TCONS_00020161|Name=TCONS_00020161|organism=Clytia hemisphaerica|type=transcript|length=1549bp|location=Sequence derived from alignment at sc0000350:182057..183605+ (Clytia hemisphaerica)
GAGTTTCTGACATGCAATAAATAAAACTCTTTTCCTTTTTAAGAAAAGAA
TAATACAAAAAATACTAAAGTAAAATAATGTCTGGTATTGCAAATTGGAT
ACGTCACCAGCAATATGTTTTAAAGCATGTTGGTGGCTACCAGAATGCAT
TTCGAAGATTGTTACGCGAAGGCAATGTCAGGACAGGAGAATTGATCGGT
GAAGATAAATATggtaataaatattttgaaaacaaaacctatTTCATGGG
TAGAAGTCGATATGTGGAATTTCCTTATGAAGGGAGACTGGAATTTGATG
GATCTCAGGTTCCACCTGAGTGGCACCGGTGGATGCATAACATGACAGAT
GAACCACCAAGTACCCATCCACCAACACCcagaaaatttattattgatca
TAAAAAGAACATGTCAGGTACCAAAGATGAATATGTACCATATTCTACTA
CTCGACCAAAAGTTGAATTCTGGAAACCTGCCAATTAATTTCTTGTccta
actttttaagtttttttgtcaattattttaaaaattatgttttccAATAC
ATGGATGGAATGAGTATGTATATTggtattgttattattttgtgcaaaat
tttgatgaaagctATTTACCATTGATGTAGAATTTTCTTCCAGCGTTTAA
ACCTCATTTTTAAATGGTCATTATTCAAAAGCTCTTATAAATCGGTGAAA
AGGGCTTGGTAAGGTTTCAACTTTTCGACTTTTTGACCTGTGTTATTTTA
AAAGTCCTTTTCACTTTTGATAGAGTTTGTTTTAGAATGTGatttttgtg
ctcgttgaaaagataatcatgAGTGAGGTATTATCgtacaaatttgaaaa
tgaggatgaaaaattaagaagaacGAATCAACTTGTTAAATTCTTCAATT
CGTTTGTTTAAAAGCAATTTATATAACCAAATTCGCTCGAAATTTAATAT
TTCTATAGCTCACTACGTACGTTTGCTTGTTTTTGGGTTTGTGTGaatca
attctttattttcagtataaaataaaaatatttgttggaATATAACAGTG
ATAGAGTTATGGAGAAGAACTGGCTGACCTTCCTTACAAAACCATGGTTT
ATACAACTCATTTTGTGAAGAAGGtatacttttttaaattatcTCTTTCA
GTCTGTTTCAGATAATATCTCTAAATGGGGATAGGGAATGGAAAAAGACG
AGCATTAATTCTTAGATTGTTCTTAACACAAAGGAAAATCTTGGAGGCAT
TCTTTATCGCTACTAAAGGACCTAGTTTGAATAACCAAATAGACACTCGT
AGCCTTATGCTTTTGTCAGAAATGGAGTCACGTGAGACTTAATGATATTT
ATAGCTTTTAATAATTCCCTatactgtaatatattttattGCCACTTAAA
ATTTTTATTGCTTTTAATTACTCACATTTTTTCcaattttttcaataaat
ttgttactttctttttacttgtatgataactgatgatggcgtaagccgaa
aagctttttatccaattttcaaatatattttatactTCATACAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020161-exon-sc0000350-1491911889:182057..183605 | TCONS_00020161-exon-sc0000350-1491911889:182057..183605 | Clytia hemisphaerica | exon |
| TCONS_00020161-exon-sc0000350-1510915933:182057..183605 | TCONS_00020161-exon-sc0000350-1510915933:182057..183605 | Clytia hemisphaerica | exon |
| TCONS_00020161-exon-sc0000350-1575043694:182057..183605 | TCONS_00020161-exon-sc0000350-1575043694:182057..183605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:182057..183605 + |
Blast
BLAST of TCONS_00020161 vs. Swiss-Prot (Human)
Match: NDUAC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.108e-34 Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 3
Query: 102 RHQQYVLKHVGGYQNAFRRLLREGNVRTGELIGEDKYGNKYFENKTYFMGRSRYVEFPYE--GRLEF---DGSQVPPEWHRWMHNMTDEPPSTHPPTPRKFI-IDHKKNMSGTKDEYVPYSTTRPKVEFWKP 479
R Q + H GG + R R + + G L+GEDKYGNKY+E+ F GR R+V + E G+ F DGS VPPEWHRW+H+MTD+PP+T P T RKFI +HK N++GT ++YVPYSTTR K++ W P
Sbjct: 9 RGLQQITGH-GGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIP 139
The following BLAST results are available for this feature:
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