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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020160 ID=TCONS_00020160|Name=TCONS_00020160|organism=Clytia hemisphaerica|type=transcript|length=3731bp
Actggcaataacataaatggaattttgaaattcttagggacttgtgttgc
ttgatgttatctgagatttaaagcactttgaaatcttttgaggacatcaa
tattattttaacatttgtaaaggaaatatttatccgcatctttgggGCTC
TTGTTTATAGATAAGATGATAGAtttagtttcaatcagcgattccgacct
tcctcagtcctaattgttcctatctctaacaGCCAGGGCCTCCGCCTTGG
TCTtttataaaattagtttggatagaataaaaacataactgatcaacaca
accaaaccttttgtcttgcgtttactctttccttcccaacaacttttgtt
tttggttatgcaggttttaaaatccacaagaaATGAACCTCtaatagctt
tatctgaataaatctggttgaaaaccttttgtcaggttttatccacgtgg
tgaacagGTTTCCCTGATTTCccaataattaaaaattggaactgtCCTGT
GGGCGCGGgtgggcgtaccgccatcgcaaaatatttttcgtgaacattta
ccgtattctaacgctaatataatctagataggaaacaaatattaaatgtG
AATTATCATATTATTTGAATTatattaaattaagtttttcgagagctttc
agattctataattggttttggccaaaaatgagtttgaaatttccataaaa
attggATTGGGCCCTTGGGCTCTAGCCTAGGTTTTCAATAAATGGGTCCA
AAAATAAGGGCAATCCTTAAATTTTTTCTGGGCCGCCCTTCTAATATCAA
TCCATAGGGTATTAGGCATGTCTGGTCCAAATTTGGCGCTTTGTTCCAAT
TTTGcacattttttgatgttttttgttATGAACCGGGCCTACTTTAAATG
CCCCATATGacttagcctgggtatccagactcaaaatttcagaaaaaaag
tcttacctcaacatacaaagtttatAAAATATTAGAGTCTGtgtaactaa
aaaagtctgatacagtttgtttgatattgtatgtgagtgaacccttgttg
acagaatctaaaaactttggaaacccaggcagacacacataattacttac
cataaaatctctttttatacaaactcaaaagcctttcaaaactactttaa
actacatccaaacgtcagccacataaaggctcctttccatcagcaatttt
gtttagaaatgaacctgtgttttcattttatatttgtttatctttttttg
taaTGTCagcttttttcataaattatgcaCGCGCATCGTAAAATATCGAA
AACACCGCaaaaaattctgctcagtgactgggcgcgtactgaatAATTAg
atacactcgcatatgcaggggcagatatccctgcagaggagttagttgga
ccagaccgtaaaccagaaacatgatcttaaaaaaactagacaatgaaata
gtttacggtctggataggGCATATGATTATATGTATGCAAGCAGATAGAA
GTTTACACAAATATTATAAAACCAACTAAGTATTTTAAGaagaaatataa
aaacaataaaagatcAAACTTCATAAtgcaaaaagaaatacttacaaAAC
ATTAGAAATCTGTTCTTAAAGATCATTTTCTACTGCTTTCTGTTTCAACA
CCattaaaaaattcaacaaaGACAGAGTAAACGCACCAAATTTTAAAAGC
ACACAAATTGAAAGTAGTATTTATGACCTCGTACTTTCTTTCCATTgcaa
gaaaatatcaaaaaacctgttttgatCTACGAGTTCCAGCACAACATTAA
AAGCAAGTATTTTCCTACTATATAAATCAGAGGTTTCAGATCATTGTTTG
GATTtgaaatatgacgtcatctatTCCCAAGGGAATAATTTACCATCAGC
CAAATAaggattattatttttttgtaccTTCACTgctgatttttcagctt
gagtttatgtctcaTATTATGATTCAATGAAGGGCTGGTTCTAAAGAGAT
AAAAGAATATGATTATCTTTGGTTTTCAAGAGAATTTTTCTCTAAATCCC
AAATCAAGGTAAATGTGCACTAAAACTAAGCTACTTAGAATCAGGGGTAT
Gtaatagcggagctggataatgcacatttgaaaaagccttgacatcaaga
gggtctgtaaaacaaaTCGGCGAATgacaattcaaaaaaattaaaaacat
tgttttcattagtaaaattataagaaattttGTCTATTAGATTATAAATA
GCAATTTTTCAtctgaaataccgcgctacacctctgcctcactttctaac
tgatattttcagaaagtgagTCGGTATGTCTGGttatggaaaaaaattca
agtcaattgaaacagtatttgtcaaaatatttccatccaaaatttttaaa
gaggaatTATGAAAGCTtcattcataacacacgctgaaaAGATTAGATTT
CATTCGCAAGGAAgtttttggggtatcttctgcAAATATTATTTCGATGA
AAAgtgggaacatcatagcaaaatatgtgaaGACGTACTGCATGACTACt
ttgtcttcttcatttttcttataaaagcagaacactcaaggggacagaga
tggatttctattatgaacagtttacaatagaaaagacaaagaagcaatcc
gctaaggaattctcatCCAGCGCCGCTATTACATATCCCTGTTAGAATTA
TATAAATGAGACTCTttttttgacagctgaaaatattatttaaaaattaa
ataaacatgGGGGTCCTAACAAGGTCTGAAAAAGTTAACAAGCAGGTTGT
CTGTCAAGAGTAGTTTGAATGAAATAGCTGGTCTGTTTTCAATAATAGAG
ACAAATCCCAAAGCTATTGAAAATTGAAGGATGGCTTCTGGTGAAAGTGT
AAATACTTCTGAATTTTATGCGCAACAAGCAAAGACTACTGATGATGCTG
CTTCAATAGCATTTGTTGTTGGAAAGAATAAATATCCCTTAGATGAATGG
TTGAAAAGGAACAAGCCTTCAAATGTCCGTAGGGATCAAGGATTTGGCTG
GATCTGGGTGTTACGTCCAGAAGATGACAATAATGACAATAATGAAGATT
TTGACCCAGATAAAATGATGGATGAATGGCAGAAAGTAAATGCTTCTGAA
AGCATTAACATCACTAAAGAATATGTTTTTGAACTAGCACGCAAACATAA
ATGTACATCAGGAGAATGGTTAGTAACAACCAGACCTGGTATAGAAACTG
ACCGACTGTGGGCTATCATTGCAAAAGGAATTGTTAATGGGGAAACATTG
GCTAGGCATGCTAAAGTGAGTGCACATGAGGGACCAGATATTAGACATGT
TTTCTGTATTTATAATGATAACTTTTTAGATAAAGATCAAGTTATGGAGA
ATGAAAGAACAATTAGGGAATTAGGAATCAAACGTGCTTTGACATACAAA
CCAGATGTTTACACATATTTAGGTATTTATCGAAAGAATCGCTGGAAGAT
TCGACCAACCATTTATACAAGCAATTGGGACATTTTGAAGAAAGGAACAA
TTATCAAAGAGACATAATTTTCATATCAAATAAATCATATTATTTAATAT
AAACCAGGGGGTTTTGATTTAGGTCGGCCACTGTATTTCTACAACATTTA
GTTTCTGACAGGTGTCATATTTTTATGTATAACTACATAGATATTATTAA
CTACATAGAGTTTACCCCCACCCCCCCCCTC Run BLAST on NCBI transcript from alignment at sc0000350:175510..179552+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020160 ID=TCONS_00020160|Name=TCONS_00020160|organism=Clytia hemisphaerica|type=transcript|length=4043bp|location=Sequence derived from alignment at sc0000350:175510..179552+ (Clytia hemisphaerica)
Actggcaataacataaatggaattttgaaattcttagggacttgtgttgc
ttgatgttatctgagatttaaagcactttgaaatcttttgaggacatcaa
tattattttaacatttgtaaaggaaatatttatccgcatctttgggGCTC
TTGTTTATAGATAAGATGATAGAtttagtttcaatcagcgattccgacct
tcctcagtcctaattgttcctatctctaacaGCCAGGGCCTCCGCCTTGG
TCTtttataaaattagtttggatagaataaaaacataactgatcaacaca
accaaaccttttgtcttgcgtttactctttccttcccaacaacttttgtt
tttggttatgcaggttttaaaatccacaagaaATGAACCTCtaatagctt
tatctgaataaatctggttgaaaaccttttgtcaggttttatccacgtgg
tgaacagGTTTCCCTGATTTCccaataattaaaaattggaactgtCCTGT
GGGCGCGGgtgggcgtaccgccatcgcaaaatatttttcgtgaacattta
ccgtattctaacgctaatataatctagataggaaacaaatattaaatgtG
AATTATCATATTATTTGAATTatattaaattaagtttttcgagagctttc
agattctataattggttttggccaaaaatgagtttgaaatttccataaaa
attggATTGGGCCCTTGGGCTCTAGCCTAGGTTTTCAATAAATGGGTCCA
AAAATAAGGGCAATCCTTAAATTTTTTCTGGGCCGCCCTTCTAATATCAA
TCCATAGGGTATTAGGCATGTCTGGTCCAAATTTGGCGCTTTGTTCCAAT
TTTGcacattttttgatgttttttgttATGAACCGGGCCTACTTTAAATG
CCCCATATGacttagcctgggtatccagactcaaaatttcagaaaaaaag
tcttacctcaacatacaaagtttatAAAATATTAGAGTCTGtgtaactaa
aaaagtctgatacagtttgtttgatattgtatgtgagtgaacccttgttg
acagaatctaaaaactttggaaacccaggcagacacacataattacttac
cataaaatctctttttatacaaactcaaaagcctttcaaaactactttaa
actacatccaaacgtcagccacataaaggctcctttccatcagcaatttt
gtttagaaatgaacctgtgttttcattttatatttgtttatctttttttg
taaTGTCagcttttttcataaattatgcaCGCGCATCGTAAAATATCGAA
AACACCGCaaaaaattctgctcagtgactgggcgcgtactgaatAATTAg
atacactcgcatatgcaggggcagatatccctgcagaggagttagttgga
ccagaccgtaaaccagaaacatgatcttaaaaaaactagacaatgaaata
gtttacggtctggataggGCATATGATTATATGTATGCAAGCAGATAGAA
GTTTACACAAATATTATAAAACCAACTAAGTATTTTAAGaagaaatataa
aaacaataaaagatcAAACTTCATAAtgcaaaaagaaatacttacaaAAC
ATTAGAAATCTGTTCTTAAAGATCATTTTCTACTGCTTTCTGTTTCAACA
CCattaaaaaattcaacaaaGACAGAGTAAACGCACCAAATTTTAAAAGC
ACACAAATTGAAAGTAGTATTTATGACCTCGTACTTTCTTTCCATTgcaa
gaaaatatcaaaaaacctgttttgatCTACGAGTTCCAGCACAACATTAA
AAGCAAGTATTTTCCTACTATATAAATCAGAGGTTTCAGATCATTGTTTG
GATTtgaaatatgacgtcatctatTCCCAAGGGAATAATTTACCATCAGC
CAAATAaggattattatttttttgtaccTTCACTgctgatttttcagctt
gagtttatgtctcaTATTATGATTCAATGAAGGGCTGGTTCTAAAGAGAT
AAAAGAATATGATTATCTTTGGTTTTCAAGAGAATTTTTCTCTAAATCCC
AAATCAAGGTAAATGTGCACTAAAACTAAGCTACTTAGAATCAGGGGTAT
Gtaatagcggagctggataatgcacatttgaaaaagccttgacatcaaga
gggtctgtaaaacaaaTCGGCGAATgacaattcaaaaaaattaaaaacat
tgttttcattagtaaaattataagaaattttGTCTATTAGATTATAAATA
GCAATTTTTCAtctgaaataccgcgctacacctctgcctcactttctaac
tgatattttcagaaagtgagTCGGTATGTCTGGttatggaaaaaaattca
agtcaattgaaacagtatttgtcaaaatatttccatccaaaatttttaaa
gaggaatTATGAAAGCTtcattcataacacacgctgaaaAGATTAGATTT
CATTCGCAAGGAAgtttttggggtatcttctgcAAATATTATTTCGATGA
AAAgtgggaacatcatagcaaaatatgtgaaGACGTACTGCATGACTACt
ttgtcttcttcatttttcttataaaagcagaacactcaaggggacagaga
tggatttctattatgaacagtttacaatagaaaagacaaagaagcaatcc
gctaaggaattctcatCCAGCGCCGCTATTACATATCCCTGTTAGAATTA
TATAAATGAGACTCTttttttgacagctgaaaatattatttaaaaattaa
ataaacatgGGGGTCCTAACAAGGTCTGAAAAAGTTAACAAGCAGGTTGT
CTGTCAAGAGTAGTTTGAATGAAATAGCTGGTCTGTTTTCAATAATAGAG
ACAAATCCCAAAGCTATTGAAAATTGAAGGATGGCTTCTGGTGAAAGTGT
AAATACTTCTGAATTTTATGCGCAACAAGCAAAGACTACTGATGATGCTG
CTTCAATAGCATTTGTTGTTGGAAAGAATAAATATCCCTTAGATGAATGG
TTGAAAAGGAACAAGCCTTCAAATGTCCGTAGGTAAGGTTggccttcaaa
atttatcatggCCTGTTCACTTACAATATGCAAacagaaaaatgttgaaa
acaaTCTTACTAATCAAGTCAAGTACTTCTTAAGATGAAAATTAGATACA
TAATATAAAGGAtgtataaataatgtttttcaaCTGACTAACCATGGCCT
GAACCTAGTGCAAGATGACAGAAAACCAATATTTTAAGACATGTTTTTCT
TACTTGTCCGACTTATGATTCAGTCTTATCTATCAGTtcaaatatcttca
aatttatCAAGCAATCCTTATTTTTATAGTTTGCATTTTTTTAGGGATCA
AGGATTTGGCTGGATCTGGGTGTTACGTCCAGAAGATGACAATAATGACA
ATAATGAAGATTTTGACCCAGATAAAATGATGGATGAATGGCAGAAAGTA
AATGCTTCTGAAAGCATTAACATCACTAAAGAATATGTTTTTGAACTAGC
ACGCAAACATAAATGTACATCAGGAGAATGGTTAGTAACAACCAGACCTG
GTATAGAAACTGACCGACTGTGGGCTATCATTGCAAAAGGAATTGTTAAT
GGGGAAACATTGGCTAGGCATGCTAAAGTGAGTGCACATGAGGGACCAGA
TATTAGACATGTTTTCTGTATTTATAATGATAACTTTTTAGATAAAGATC
AAGTTATGGAGAATGAAAGAACAATTAGGGAATTAGGAATCAAACGTGCT
TTGACATACAAACCAGATGTTTACACATATTTAGGTATTTATCGAAAGAA
TCGCTGGAAGATTCGACCAACCATTTATACAAGCAATTGGGACATTTTGA
AGAAAGGAACAATTATCAAAGAGACATAATTTTCATATCAAATAAATCAT
ATTATTTAATATAAACCAGGGGGTTTTGATTTAGGTCGGCCACTGTATTT
CTACAACATTTAGTTTCTGACAGGTGTCATATTTTTATGTATAACTACAT
AGATATTATTAACTACATAGAGTTTACCCCCACCCCCCCCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00020160-exon-sc0000350-1491911889:175510..178541 | TCONS_00020160-exon-sc0000350-1491911889:175510..178541 | Clytia hemisphaerica | exon |
| TCONS_00020160-exon-sc0000350-1510915933:175510..178541 | TCONS_00020160-exon-sc0000350-1510915933:175510..178541 | Clytia hemisphaerica | exon |
| TCONS_00020160-exon-sc0000350-1575043694:175510..178541 | TCONS_00020160-exon-sc0000350-1575043694:175510..178541 | Clytia hemisphaerica | exon |
| TCONS_00020160-exon-sc0000350-1491911889:178854..179552 | TCONS_00020160-exon-sc0000350-1491911889:178854..179552 | Clytia hemisphaerica | exon |
| TCONS_00020160-exon-sc0000350-1510915933:178854..179552 | TCONS_00020160-exon-sc0000350-1510915933:178854..179552 | Clytia hemisphaerica | exon |
| TCONS_00020160-exon-sc0000350-1575043694:178854..179552 | TCONS_00020160-exon-sc0000350-1575043694:178854..179552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000350 | supercontig | sc0000350:175510..179552 + |
Blast
BLAST of TCONS_00020160 vs. Swiss-Prot (Human)
Match: CK068 (UPF0696 protein C11orf68 OS=Homo sapiens GN=C11orf68 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 6.202e-30 Identity = 75/190 (39.47%), Postives = 98/190 (51.58%), Query Frame = 1
Query: 2989 LDEWLKRNKPSNVRR--DQG------FGWIWVLRXXXXXXXXXXXXXXXKMMDEWQKVNASESINITKEYVFELARKHKCTSGEWLVTTRPGIETDRLWAIIAKGIVNGETLARHAKVSAHEGPDIRHVFCIYNDNFLDKDQVMENERTIRELGIKRALTYKPDVYTYLGIYRKNRWKIRPTIYTSNWDI 3534
LD WL + PS V R D G GWI V + D + W+ + S IT + +LA H SG+WL+ PG + D WA IA+ +V G+ + AKVS R V C+Y D+F D+ V+E + IR GIK LTYKPDVYTYLGIYR NRW + PT+Y S + +
Sbjct: 50 LDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVY----GQGYSPNSGDVQGLQAAWEALQTSGR-PITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGQL--QVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQL 232
The following BLAST results are available for this feature:
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