TCONS_00020131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020131
Unique NameTCONS_00020131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020131 ID=TCONS_00020131|Name=TCONS_00020131|organism=Clytia hemisphaerica|type=transcript|length=2145bp
cgtaatgtatttcttccagatgttgaaaattttcccgaccttcagagctt
tagcgtgtcggaagaaaatttctacatcgggtgccagataagatCTCCGA
ACACCTTCTCTATTTAGAAAGCAGCATCTATagtcattttaaaatttttc
agattgaAAATGAGATTGAGGTAGACTAGGTTAGTAAGGAAATTCTTTTA
CTTGATTGGTCAAGTAGGCGATTTATTACGTCATACAACAATAGTAATAA
AAACTCgtgattttaaaagatttcattCTACAAAAACTTTCGAGGAAAGA
GAAGCCAgtgaattttaaagaaaaatatactAGCTGGAAAGCAAACATAA
ATctttaaacaaaaagattttattttcttgCTCAGTCTGTTCAAACGTTA
AATTATTATAAACATGGCTATCGTAACGTCTTGCACTAAAGGTTTATTCC
TTATcttcaactttgttttttggttaACTGGTCTTGGTTTATTAGTCCTT
GGTATCTTGTCTAAATATGCGTTCAGCTACATGCTCAAGTTGTCATCTGA
CATCAACTATAATTTGGCTCCTTACATCATGATTGGATGTGGTGTGTTCA
TTGTGTTAGTGGGCTTCATCGGCTGTTGGGCTGCTGTTAAAGAACATGGT
TGGGCCCTCAAATTGtaTATGTTTGTGCTGGTCATCTTGGTAGTAGTCGA
AATTGCAGGTGGAATCACTGGATATGTCATGAGAAATAAGCTGTCTAATG
GATTGAAGTCTGGTTTGGATAATGCTGTCAAGAATTATTATCAAGACGAA
GATTTAAAGGAAGCAATGGACAAAGTTCAAGGATCTGTCATCAAGTGCTG
CGGTGAAAACGGATACAAAGATTACGTCACAGCGAGCGGTAACGCCACTG
TTGGAAATGCCACCGTTGGAAATGCCACCACTGTCACTCACTACAAAGTT
CCAAAATCATGTTGTAAAGATGGGGTTACTGATGGATGCAAGTATGATCA
AGTGATTACTGATACTACAACTGATACTGGATTTTATACTGATGGATGTT
ACAGCGAGCTCTTAACAAAGACCAAGAAGAACTTTTTGATCGTCGGTGGA
TGCGCCCTTGGTATTGCTGTTTTCCAAATTCTTGGTATCTTATGCGCATG
GGCATTGACAAGACAATTCAATAGCGATAGCTACCAACAAATGTAGATTC
TGAAATCTCATAGCTGCAAAGGAAACTCATAGGGCTCATAGAGATGGTTA
GAATATCTTTTGAGTATTTCTCATCAGCTTCTAGTCTGTGTACCCTCTTC
TTGTTTCTCTTTTCCATTTTCTATTTGCACGCTccattttattttggttt
aatTCTTCTGTGGGAAGGGAGAAGTACTGATAATCTTGTAGAAAGCTCTC
TCAAGATATAGAATTTCAATCTTGAAACGTGAACTTGTAGATTGTAGGAA
TTGTAAAAgtcttttgttttgaatcttTGAATGCTTAGTCTtgctatttt
tattttgacaaaaattaccatatcttatttgaaattttcaataattgtAG
AAATTAGATTTTCGACATTATTTAGGTGTGTTTGTTGTTGACGAATTTTA
TGTGGATACTAAATGGTTGCTATTCtatatttttaacatttggGAATTAT
CAGTTttgttcaaaaaaataatatctttgCGAATATGTACAACAAGAGTT
TTGAGGATAACTCCTACCCACTTATAGCTTTATATAAACCTTATAAAAAG
GTAGTTtttcaatcccggccaagcggtaatggtagcactactcaatagcg
gtgttaTGCATCTACTTTTTCCTCGGACACTTGTGATGCCGCTTACGTTT
CATGTTAGGCAAAGATTTGATACTGcttggcttctttgcgggtacaaCTC
CGATCAACGTGTTCTTAACTCTCAGACTCAGTCGTAGGAAATCTTATCAG
ATTATTCgcataaattttaattttttgcctTTNTTCTTAACTCTCAGACT
CAGTCGTAGGAAATCTTATCAGATTATTCgcatgaattttaattttttgc
ctttttttttacttgtcaGATATTTTGTTAGGGGATAGTTATacttatgt
tttgatttaaagaaaattaatttataTGATTCATTATCATGCGAT
Run BLAST on NCBI

transcript from alignment at sc0000349:28793..37840-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020131 ID=TCONS_00020131|Name=TCONS_00020131|organism=Clytia hemisphaerica|type=transcript|length=9048bp|location=Sequence derived from alignment at sc0000349:28793..37840- (Clytia hemisphaerica)
CGTAATGTATTTCTTCCAGATGTTGAAAATTTTCCCGACCTTCAGAGCTT
TAGCGTGTCGGAAGAAAATTTCTACATCGGGTGCCAGATAAGATCTCCGA
ACACCTTCTCTATTTAGAAAGCAGCATCTATAGTCATTTTAAAATTTTTC
AGATTGAAAATGAGATTGAGGTAGACTAGGTTAGTAAGGAAATTCTTTTA
CTTGATTGGTCAAGTAGGCGATTTATTACGTCATACAACAATAGTAATAA
AAACTCGTGATTTTAAAAGATTTCATTCTACAAAAACTTTCGAGGAAAGA
GAAGCCAGTGAATTTTAAAGAAAAATATACTAGCTGGAAAGCAAACATAA
ATCTTTAAACAAAAAGATTTTATTTTCTTGCTCAGTCTGTTCAAACGTTA
AATTATTATAAACATGGCTATCGTAACGTCTTGCACTAAAGGTTTATTCC
TTATCTTCAACTTTGTTTTTTGGGTAAGATTCATTTTTATATTCATTCGC
CTATTTTTGAGTGATCTTTTGAGCCTGATGCTATATGTCCCATATTAATT
AGGATAGGTATTTTGTGAAACAAAAAAATGGTCTAACTATTAGGTAGTGA
GCCATTAGCCTGTTAGCATCAAATTCTATCAAATAGAATTGGACAATAGG
GACATGCCACTGCACTGGATGGAGTTTGCTGACACGCCCAACACCGGACG
CAAAATGAGAAAAACCAGACAGGTTCTTGAATCAATCCGGTGCATCCGGT
GGTGCGCAATAAAACACTAAAGAATTCCTATTTCTATTTCTGCAATCCAA
AGCTCCTGAAAGAAGATAGTTGGACAGAAATTCTTTGAACTTCTTCACAT
ATATGTGCATAAATTCATTATGGAATTACTTTCGCAAATATTTACCTCCA
ACAACTGCTCTAACTTGGGAGTACCGTAAGTTGGTCTAATCCCTCGTCTA
ATTTCGACACCCTTCTTTAGAGACAGGAATAAATATGAAAGCTTGAATCA
CTGATTGAAAAAGGATTATTCCTCTCTGACCACTAAGCAAAGAAAAACAT
TTTTAACCTTTCTATCAATTTCAGGTGATAAAAAGGGTGTTGGAATCAGA
GAAGGGATGTCGACATTAGGCCAAGTTACGGTATATATCTGACAAAACAT
GGGATGGCAATTCGGCCACCATTTCACCGAACCTCCAAAGTCATTTGATT
TGAGTTTATGAATGGCGTATTAAAAAATACACAATTTCTCTTTCGCACCG
AGTAGCCTTTTAAATCGAAATATGAAAAAAATCTGTAGTGGAACGCAAAA
CGATGGAGTGTTTGACGTCACTTGCGCAGCAAGTTACACTCTTTATTTGT
TAATCCCATATCGGGCGATGGGCAGTTAGGTGGCGGGCGTTCTCTAATTA
TCTAAATCGGCATCCGGTCATTTTGAATGAAAACCAACATGACAGAAAGT
ATAAGTTATCAAAACAAATTTGTTGTCAATGAGACTTAAAAGAAAGTGAA
AATACAGGCCAGATATCAACCAGTCCCATGTTTCGACCAATCGTCCCAAG
TTAGAGCAGTTGGCAGTAATAAAGATTGTTATAAAAATTTAAAAGGTTAA
GCCTTTACAAATATTTATCGGCAATCCAAAAAATATCTGCAGTCTGATTG
GTTGAAAAGAGTACAATATATCTTGTATTTTACATGTAAAGATATAAATT
GACGAAAAGATGGTGTTACATTGTAGCAATAGAGATAATCTAACATCACT
CTGCTACAAAAGTGCCCTGTGCTTTTTTCCAACACAAAAAAAAAAGTGCA
TTTTTTGTGTCACCGATAAACAACTTATCAGACATTTTCTCGTATAATAT
GGCAATATTTCACCCGTCCCAGATTTTTTCCGTATATTGTATGCAAAAAT
CTAGAAACTCTGTGGTCTATTGAATAAATAATTACAATGCTAATTTATCC
GATTTGTACTAGCCAGTCAGGACTTCCTTTCACTTTTTTGCACATAGGTG
CCCGACGGTCTCTAGCTATATATTTTGGTTTTGATTTCAAGCAAAAGTCT
TCACAACATGATGTAGGGCAATGGGATGATTGTTGATAAATATAAAAATT
AAATTAAAAGAAAATCCCGATCATTGTATTCAGCACTAAAAAAAACCCTT
TTCAATGTTGAGTTTATTCTACCTTAGATCATAATTGTTACCTTTCTAGA
TTTATTAGCGTTAAAATACAGTAAATTTTCATGAAAAATATTTTGTGATG
GCCGTACACCCAATCACATCTATGGTTATTTTCTATCTAAAATAAATAAT
ATCAAAAGACTAAGGAAGCCCTGACTGGTTACTGGCTGAGGTCTTGAGAT
GAAGCGAGGCTAAACATTATTCTGTCAATAACAAACTACATTAAAATTGT
AACTGCCTTAGTTTGAATTGATGTGTGACATAATTAAGTCTCCTGTGAGT
TGATAAATTTGAAAAAAATTGTTGGAAGGGTAATTTTTAAAAAGTTTTAA
TAGTCTAATCAAGAATTTTGTTGTTGCTGAGTTCTCTTTAATAAGATTAA
TATTGGCTTTAGTTTGACAAAGATGTTTTATTTTCAGGTATTATAGACAA
TTCCACTATATGGCTGTATGTAGCAATAAAAGGGAAAACAGCACCGTTTT
GATGTTTTCAATTTTTGAAGTTGATATTAGATAGCTAGAATATTTTTGAA
CAACCAATGAAATTTTGATATGTGTAAAATCATTGGTTTTCAAAGCACAA
AAAAAAGAGTTTCGATTCATCATTTAATAATCACTTCTCTCTCAGTTGGA
ACAAAATAGAAACCCATCTAATAAAGGAATATATATAAAAGGAACTTGTT
ACAATACAGATTTTTTATTAAAAAATTAGAAAGGAAGAAAAGAGATACCT
TGGGATATTAATTTATGATGGCTTGATAGGATGTTTAATCTGTTTTCTCT
CCTCCTTTAATCATTTTTCTCAAAAGTTTTCTCAATATTAGAGAATTGTT
TTGAATATTATTTTGAAGGATGCTCACAAAAGAAAATCTAAACAGCATGA
ATAGTCCCTTTTGTATATACCCTTTATCTGAACTAACTTCTTCCCTTTTA
GATTTTAGTTATAATGCAAAAATAGGAATTTCTCTTATGCATTGATTATG
GTCCTTTCAGAACTAATTTGTTTGTTATGATAAAATTCAATGATAACCTT
TTGCTATGTCTGATTGAGACTCTGACATTATCATTTTAAAAGAATGCAAA
CCTTATTATGGGAAATAAGGAAATGAAAATCTCATTATGAGAAACTTTTC
TCTCAAAGTTTACTACTAATGACGTATTAAAAAATGAAGAATTTTGGTAA
ACCAATATTTATAAAATGGCTTTTGAAAACTAATATTATTCGATCTATTT
AGCACATAAAATAAAGCCAAATTAAAGGAAATCCTAAAATGAAATGATAT
TGACTAAGCTACAGCATTGATGAATATTGATTTTCCTGTCATTTCCAAGT
ACGCACCAGAACTTTAATCTTGTGATGTCCTCAAATGCATTAATAAGCAA
TGTAATAATGTGATTGAATTTCAAATCCAAGAAAAAATACTTAAAGCCTT
TCTCATTCTTACTTTTCATCACCTTTTTTCGACATTTTATTTTCAGTTAA
CTGGTCTTGGTTTATTAGTCCTTGGTATCTTGTCTAAATATGCGTTCAGC
TACATGCTCAAGTTGTCATCTGACATCAACTATAATTTGGCTCCTTACAT
CATGATTGGATGTGGTGTGTTCATTGTGTTAGTGGGCTTCATCGGCTGTT
GGGCTGCTGTTAAAGAACATGGTTGGGCCCTCAAATTGGTAAGAGAAATC
ATTATTTGACAAAGCACAAGGCAAAATTCTAAGCATTTCACCCACTGGCT
GTTTTTTGAGACCCCCCCATGATACATGGAAAGAAATGCTACAAGTTTTC
TGGCTTATAACGGCCACAGTGTTTGGAATTTTCACTGAGTTTCAAAGGAT
GATAATTTTTTGCTTTTCTTTTTATAGTATATGTTTGTGCTGGTCATCTT
GGTAGTAGTCGAAATTGCAGGTGGAATCACTGGATATGTCATGAGAAATA
AGGTATTGTATAAAGTATTGTAATGTTTGGAGGCTTAATTCTTATACTTT
AATGGGATAAACTTTCGCGGGGATTAAATTTCGCAGATTTCGCGGGTTTG
GGTGTCCCAATGGAAATTTACAAGGGCCTCACCCGCGAAACATTTCTAAA
CAAAACTCAAAATATGTCAAACAAATACTATTTGAATGTTTACTGGCATC
GAAGAAGCGCTAATAATGTGTATTTCAACAACCAAAATGCATGATTTGAC
AGTAAAAGTCTCAAAATGATAAAAATATTGCCACCCAATAGTGCCACCCG
CGAAATTAGGACCGCGCGAAATTTTTGAATTTCGCGGATAGGCCCAACCG
CGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAGTAAATAGGGG
AATTGTCTCAATTTAGAAGTTGAACTTTTTAAAGACTATCTATTTATGAC
CTTGCCAAAAAAACGAACTATAACAGAGCCTTTAATATTATTGCTTCACA
TAATTTCAGAAATATATTGTTTTGAATTGATTATGTTATAACACATCATG
TTCTTTAATTCGGAAAGGGGTCTTGTTATATTGATTGTATCGCTTTACCT
CTTATGTAATTGTTTGTAAGAGGCCCTTGATGAGATGAGTGGATTTTAGC
TGCAGAAAAATAGACTGGCAGAATATCAACCTTTGAACTTGATTACACGT
TGCCCTAGTTTGGATCCTTTTGACCTCAGTGTTTATTTAAAACAGTGTTA
TTTATTACTGAAGGGCCTTTTTTAAACAAGCCTTGACAACCAAGTTATTG
GCTTATTTGTTTGCCTTTCTTTTGACAATTTGGTGTTTAGGTGTTTTAAT
AACCATATTTTAAAAGCAAATAGACATAAGATATAATAAATTACTGAGTA
ACACGATTCATGGCTCAGTGTATACAATCGATTATTGTGCTTATAAAAAA
GATAATAGACATAAGAATTAATTGAAAGCTGAGTATGCAAACAGATAAAA
TCACAAATATAAAGCAACAAAGTTAATGATTACTTTGACATTAATCCATT
TTAATGCCCTTCCGCCTAATCATTCTTATTCGTCATGCCCTACCATCATA
ACACACGTATTCGGCATAAAAAAATACGAAATGCGGTCAAGCCTCTAATT
TTAGGTCACCATGAAGAATTTTACAAAATGTGCGTTTGGGAAAACTTGGG
AACTAAAATGCCTCATTTTCCCGAATAAAAGCGGTCAGTTTTCAATTGTT
TGTATAAAAATGATCTCGATAACCATAATTTACGTAACAACGTGTTGATT
GCGACGACTCACTTTTTTCGAGGGTTTGCAACGATCAGTTGCCCAAAAAG
AGATTTTTAAGTATTGATAGTTTTTTTTTCGAATTCTAGCATTTTTTATT
TAATATCTTATAGCTGTCTAATGGATTGAAGTCTGGTTTGGATAATGCTG
TCAAGAATTATTATCAAGACGAAGATTTAAAGGTACAGTCCTTTTCATGT
AAAAACAGCAGAAAGATTTCTCTTCGCTTGTTGTCTTGCTAGAATTTTCC
CTTAACCTTAAAAACTTAAAGAAAACTTTGGGGCAGATTGGAGTATTCAA
AAACGGTCGGATTTGGCTGAAATTTGGCACACTTTTTCTTTGAGCTAATA
TCTGGGGTGTTTTTCATTTTTCAAACATTTTGATTTTTTGGGCCCAGAGA
CGAGTTTTTTAGCCAAAACGAGGCTTAAACTTTGAGGCAGCCTGGAGACT
TCAAAAATGGTCGGATTTGGCTTGGGTGAATATCTGGAGGTAGTTTTTTC
ACTTTTCGAAAATATTTGTTTGGGGCCTTGGTACTGATCTTCTGGTTTGC
TTTGCTACAATCAGGCTACTGAAGTTGAGCCCAGTGCGTTGCGCACGTTC
GTCGGTTATAGTTACAGCTAACAATACACTTTGTGCTCAAGCTGACCTTG
CTTTAGTCAAGGAACTTCAGTTCTTTTTCCACAGTCCTTATTACTAAGCC
GAACTTTAAAGACCTATTTTTGCTATAACAAACAGGAAGCAATGGACAAA
GTTCAAGGATCTGTCATCAAGTGCTGCGGTGAAAACGGATACAAAGATTA
CGTCACAGCGAGCGGTAACGCCACTGTTGGAAATGCCACCGTTGGAAATG
CCACCACTGTCACTCACTACAAAGTTCCAAAATCATGTTGTAAAGATGGG
GTTACTGATGGATGCAAGTATGATCAAGTGATTACTGATACTACAACTGA
TACTGGATTTTATACTGATGTACGTGGACTCTTGTTTCTTGATTATTTAC
CCTTTGATCTCTTTTTTTATTCTTGCGTTGATTTTTTAAATACACTAAAA
TGGGAGTGTTATATGATGATTGATCTACTATGTTTTTAACTTCTGAACTT
CAACTTCAGCAGTCTAAAATCTTTGCAAATTCTAACGTGCTTTAAAACGG
AAAATAACACGGATTTAAGTCACCAAAAAAAGAGAGAGAAAGAGGCCAAG
TAGCGTAAAAAATATAACATGATGATAGTTTATGTCTTGTAAATGGGCCT
TGGTATTAGTGTCTACTTTTACTCAATATTGGCTTCTTTTATGTAAATTA
CAGAAAAAACAAAAAAACAATGTTATAATATAATTTGAAGCCATTTTTTA
AAAGTTCAAATTTTAAAAAGAATAAAGTGAAATATTTTGAGCAATGGGTT
TTTAAAGTTTTTTCAAGGGACCTGTGTATCTGTAGTAAAGCAGGGTTTAT
TTTATACTATACCTGACCCCTAACATTTTTACTTGTTTTACATAGGGATG
TTACAGCGAGCTCTTAACAAAGACCAAGAAGAACTTTTTGATCGTCGGTG
GATGCGCCCTTGGTATTGCTGTTTTCCAAGTAAGCGAAATTCATATCTCT
GAACACACTTGTCACGGATATTTTCAAGAGGCTCCCAGTCACCTTTCAAA
TCACGCAATCGAATCACACAAAAAGAATTTCCAAATCACCTTATCACGAG
TTAAATTTCCTTTCTATCACGATCACGTTGATCACCTTCGTTCCTCCGTT
CACGCAATCGCACACTTTAAAATCTAAATCACGAAATTACCAAAGCCGCT
GGGGGGGCTCTTTCAAAAATCTAGACCGACCAAAATACCTAATGCAGTAA
ATATGAGTTTGAATCTAATGCCTGTATTCATATCAATCAGATTGGGTCTG
AGTAGGCTAGGGTGAAATTACGTCGATATCTACGCACCTGTGAACGTATC
TACGCCGCAATGACTTCAGATATTTGACGTGTCTTGGCCCTCTGATAATC
AAACCCAGGTTTTTTGACGCTTTAGGGTTCTGTGGTGGGTGTATTTACGA
ATATGAATTTGTTCTAAAAAAAATGTATTCCCTTTAGGAGGGCTTTACCT
CTTGAGCTTCCGATGAGATTTATCATTTTCAAATCTAAAGAACTGAAAAC
GACTTTAGTTGAGAGTGGAGAGTGAAAAACTGCTGCCTCTCCATACTTGC
AGCCTCTTTCTAGCCTCGTGAAAATTAAAAGTTGAGCAGGAAATAGTCTA
GCAAGCTAGACGACTAATTCAGACATGAAATAAAGAAAAAAGTAATGGGG
GAATAAATTTTAGTCTATACTTTAGTTTATACAAACTAAATTCCGTAACA
ATAATCGTATTATCATATAATGCCTATACTACTGTATTACACGCATTATA
AATGATTCCAGTCTATACAGGAAACGGAAATATTTACGATCTGATGTATC
GCTGCTAGGAAACAGTTTGTCTTAACTAAAGCGATATCATTCTCTATGGA
AAAATGGAAAAAATCGCATTGCCTGAAATGAAAATCAAGTTTTTTAAAGT
GTCTCTTCGACACTTTAAAAACATAAGGCATCTTTCCCAAAAGTGTTTTC
ATATTTTTTATGATTTTCTTCCTCCTTTAGATTCTTGGTATCTTATGCGC
ATGGGCATTGACAAGACAATTCAATAGCGATAGCTACCAACAAATGTAGA
TTCTGAAATCTCATAGCTGCAAAGGAAACTCATAGGGCTCATAGAGATGG
TTAGAATATCTTTTGAGTATTTCTCATCAGCTTCTAGTCTGTGTACCCTC
TTCTTGTTTCTCTTTTCCATTTTCTATTTGCACGCTCCATTTTATTTTGG
TTTAATTCTTCTGTGGGAAGGGAGAAGTACTGATAATCTTGTAGAAAGCT
CTCTCAAGATATAGAATTTCAATCTTGAAACGTGAACTTGTAGATTGTAG
GAATTGTAAAAGTCTTTTGTTTTGAATCTTTGAATGCTTAGTCTTGCTAT
TTTTATTTTGACAAAAATTACCATATCTTATTTGAAATTTTCAATAATTG
TAGAAATTAGATTTTCGACATTATTTAGGTGTGTTTGTTGTTGACGAATT
TTATGTGGATACTAAATGGTTGCTATTCTATATTTTTAACATTTGGGAAT
TATCAGTTTTGTTCAAAAAAATAATATCTTTGCGAATATGTACAACAAGA
GTTTTGAGGATAACTCCTACCCACTTATAGCTTTATATAAACCTTATAAA
AAGGTAGTTTTTCAATCCCGGCCAAGCGGTAATGGTAGCACTACTCAATA
GCGGTGTTATGCATCTACTTTTTCCTCGGACACTTGTGATGCCGCTTACG
TTTCATGTTAGGCAAAGATTTGATACTGCTTGGCTTCTTTGCGGGTACAA
CTCCGATCAACGTGTTCTTAACTCTCAGACTCAGTCGTAGGAAATCTTAT
CAGATTATTCGCATAAATTTTAATTTTTTGCCTTTNTTCTTAACTCTCAG
ACTCAGTCGTAGGAAATCTTATCAGATTATTCGCATGAATTTTAATTTTT
TGCCTTTTTTTTTACTTGTCAGATATTTTGTTAGGGGATAGTTATACTTA
TGTTTTGATTTAAAGAAAATTAATTTATATGATTCATTATCATGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011307XLOC_011307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020131-exon-sc0000349-1575043694:37368..37840TCONS_00020131-exon-sc0000349-1575043694:37368..37840Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1575043694:34003..34194TCONS_00020131-exon-sc0000349-1575043694:34003..34194Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1575043694:33739..33813TCONS_00020131-exon-sc0000349-1575043694:33739..33813Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1575043694:32259..32327TCONS_00020131-exon-sc0000349-1575043694:32259..32327Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1575043694:31472..31705TCONS_00020131-exon-sc0000349-1575043694:31472..31705Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1575043694:30862..30945TCONS_00020131-exon-sc0000349-1575043694:30862..30945Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1575043694:28793..29810TCONS_00020131-exon-sc0000349-1575043694:28793..29810Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:37368..37840TCONS_00020131-exon-sc0000349-1510915933:37368..37840Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:34003..34194TCONS_00020131-exon-sc0000349-1510915933:34003..34194Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:33739..33813TCONS_00020131-exon-sc0000349-1510915933:33739..33813Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:32259..32327TCONS_00020131-exon-sc0000349-1510915933:32259..32327Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:31472..31705TCONS_00020131-exon-sc0000349-1510915933:31472..31705Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:30862..30945TCONS_00020131-exon-sc0000349-1510915933:30862..30945Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1510915933:28793..29810TCONS_00020131-exon-sc0000349-1510915933:28793..29810Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:37368..37840TCONS_00020131-exon-sc0000349-1491911889:37368..37840Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:34003..34194TCONS_00020131-exon-sc0000349-1491911889:34003..34194Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:33739..33813TCONS_00020131-exon-sc0000349-1491911889:33739..33813Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:32259..32327TCONS_00020131-exon-sc0000349-1491911889:32259..32327Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:31472..31705TCONS_00020131-exon-sc0000349-1491911889:31472..31705Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:30862..30945TCONS_00020131-exon-sc0000349-1491911889:30862..30945Clytia hemisphaericaexon
TCONS_00020131-exon-sc0000349-1491911889:28793..29810TCONS_00020131-exon-sc0000349-1491911889:28793..29810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:28793..37840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.4656	51.6263	27.8135	22.5459	23.0167	15.7508	48.336	47.2914	72.9913	62.2119	75.042	66.7652	47.6281	46.8022	47.8469	55.858	32.3346	34.9771	36.8994	43.5552	51.4915	47.2105	55.9833	63.2265	59.93	83.1263	84.0798	82.4427	145.469	124.123
Blast
[Close]
BLAST of TCONS_00020131 vs. Swiss-Prot (Human)
Match: TSN6 (Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.102e-30
Identity = 78/257 (30.35%), Postives = 134/257 (52.14%), Query Frame = 3 
Query:  423 VTSCTKGLFLIFNFVFWXXXXXXXXXXXXSKYAFSYMLKLSSDINYNLAPYIMIGCGVFIVLVGFIGCWAAVKEHGWALKLYMFVLVILVVVEIAGGITGYVMRNKLSNGLKSGLDNAVKNYYQDEDLK-EAMDKVQGSVIKCCGENGYKDYVTASGNATVGNATVGNATTVTHYKVPKSCCK-DGVTDGCKYDQVIXXXXXXXGFYTDGCYSELLTKTKKNFLIVGGCALGIAVFQILGILCAWALTRQFNSDSYQ 1187
            V +C K + LI+ F+FW+TG+ LL +GI  K +      L ++   N+ P+++I  G  I+L+G  GC+A  +   W LKLY   L ++ +VE+   I G+V R+++ N  K+  + A+K Y    D +  A+DK+Q + + CCG   Y+D+   +  +  G               PKSCCK +  T     D+V            +GC+ +++T  +    +V G + G+A FQ++GI  A+ L+R   ++ Y+
Sbjct:   13 VITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV-PFVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNSTGDYRSHAVDKIQNT-LHCCGVTDYRDWTDTNYYSEKG--------------FPKSCCKLEDCTPQRDADKV----------NNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYE 243
The following BLAST results are available for this feature:
BLAST of TCONS_00020131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN61.102e-3030.35Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1[more]
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