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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020100 ID=TCONS_00020100|Name=TCONS_00020100|organism=Clytia hemisphaerica|type=transcript|length=2889bpRun BLAST on NCBI transcript from alignment at sc0000349:56761..67176+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020100 ID=TCONS_00020100|Name=TCONS_00020100|organism=Clytia hemisphaerica|type=transcript|length=10416bp|location=Sequence derived from alignment at sc0000349:56761..67176+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020100 vs. Swiss-Prot (Human)
Match: MED12 (Mediator of RNA polymerase II transcription subunit 12 OS=Homo sapiens GN=MED12 PE=1 SV=4) HSP 1 Score: 186.422 bits (472), Expect = 8.326e-48 Identity = 185/664 (27.86%), Postives = 305/664 (45.93%), Query Frame = 3
Query: 15 GYEQTTQSVNLKEKSTVQALAFFTSVLVARQIIKLNDLLSEVLYPAL---KVTSKKSTKGLQLVCRILEQIFVLNPFPAPKLKLGQTHPFALDV-----FDAGLLRGEMNKANLSSVLSVLKRLYLQAE---KGKS--------------------------DNKSPSNSISDVI-KRSLQLIINQSWLQDKVLSN--ENKNTIMKAVLDSELKSHQSRHFISLI------LNQETKSSPAVNVSNIQQITNRICMTLDKWSLHNASLELQLLLKMASKEEHQSILTAIGRSILSTLTETSDVGH----------------------RRS---LVGPLISKLSISIQGRILKSASETLEKGKWWIPGGNNKLSAD----------SQSILFALISSCLQNQEENKNMFLGSLQKQLQALVTAQKEDKI--DLFSSQFSGLVDAVRLRLNLVGMLFDNLLKSPSVLGDWAITLFSLLLSGIIPYTENTVLFTNVTDMVVILLQKIHMNEIXXXXXXXXXXXXXXXPLPNNEILRFNLVVRKMRKELSQRPSTEIGTLCEELLPLLTGPCEIICSEPTYSLETLQNINKEKPNKPESSNQPEQIRKRTHVQSINAWDLLEDSKNSGPLNLAMFGAVRVEKRPLRYVEESLRLIHHSHQKRKPLSYF 1757
G+ +V++ + S +LA F ++L+ARQ + L DL+ P+L + + S G +L CRIL L+ F P+L Q+ V D LL N+ +V +VLK +++ + KG N S + DV K L+ I Q W+ ++ L + E+ N + VL S Q++ + LI L+ E +P +Q RI LD+W++ +SLELQL++K E S+L I ++ + ++++ G RS LV PLI+KL S+QG +LK+A E LEKG+ G +++ D SQ +L+ +CL+ Q+E + L SL Q+ +V ++D+ D Q + +A++LRLNLVG +FD + +S +WA+ L +++SG + N LFT V DM+ +L+ +++ +SQ + N+ NL +K++KEL +R S + + +LLPL ++I EP S L + K +S + E ++ T Q I+ WDL E K S PL+ FG VRV++R R E+ L++H+H + +P +Y+
Sbjct: 1109 GFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRIL-----LHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSA----QAQRLMQLICYPHRLLDNEDGENPQ------RQRIKRILQNLDQWTMRQSSLELQLMIKQTPNNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHL--GSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLYSQVHQIVNNWRDDQYLDDCKPKQL--MHEALKLRLNLVGGMFDTVQRSTQQTTEWAMLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGS---------MEENKRAYMNL-AKKLQKELGERQSDSLEKV-RQLLPLPKQTRDVITCEPQGS---LIDTKGNKIAGFDSIFKKEGLQVSTK-QKISPWDLFEGLKPSAPLSWGWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYY 1738 The following BLAST results are available for this feature:
BLAST of TCONS_00020100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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